BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c7840ac059f31ff5f322e97f166a0c4c.SwissProt.fasta
1 sequences; 437 total letters
Query= ACIAD3401
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
Q59916 Protein translocase subunit SecY [Streptomyces griseus] 33.1 1e-06
>Q59916 Protein translocase subunit SecY [Streptomyces griseus]
Length=437
Score = 33.1 bits (74), Expect = 1e-06
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 0/67 (0%)
Query 23 IAAIFSAGLLAIVALIINYVKRNDVQGTWLASHFTWQIRTFWWYLFWNVIAFVPFFFLFF 82
I IF++ LL I ALI+ + TW+ +F ++ ++ +I F FF++
Sbjct 276 IPVIFASSLLYIPALIVQFSNSQAGWATWIQDNFVTGDHPYYIATYFVLIVFFAFFYVAI 335
Query 83 TGDNDNL 89
+ + D +
Sbjct 336 SFNPDEV 342
Score = 18.1 bits (35), Expect = 0.13
Identities = 10/36 (28%), Positives = 16/36 (44%), Gaps = 0/36 (0%)
Query 22 YIAAIFSAGLLAIVALIINYVKRNDVQGTWLASHFT 57
YI A LL +V + +K+ GT + +T
Sbjct 81 YITASIILQLLTVVIPRLEALKKEGQSGTAKITQYT 116
Lambda K H a alpha
0.336 0.145 0.492 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 45126
Database: c7840ac059f31ff5f322e97f166a0c4c.SwissProt.fasta
Posted date: May 20, 2024 10:11 PM
Number of letters in database: 437
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
