BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1c03f57c253d25d2f99445246f7638a3.SwissProt.fasta
18 sequences; 19,633 total letters
Query= ACIAD3386
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
P57072 Uncharacterized protein NMA0194 [Neisseria meningitidis se... 756 0.0
Q51152 Uncharacterized protein NMB0075 [Neisseria meningitidis se... 755 0.0
Q45388 Protein tex [Bordetella pertussis (strain Tohama I / ATCC ... 750 0.0
Q51062 Transcriptional accessory protein Tex [Neisseria gonorrhoeae] 750 0.0
P46837 Protein YhgF [Escherichia coli (strain K12)] 736 0.0
P71353 Uncharacterized protein HI_0568 [Haemophilus influenzae (s... 730 0.0
O31489 Uncharacterized protein YdcI [Bacillus subtilis (strain 168)] 538 0.0
Q5RDI0 S1 RNA-binding domain-containing protein 1 [Pongo abelii] 372 7e-118
Q8N5C6 S1 RNA-binding domain-containing protein 1 [Homo sapiens] 372 7e-118
Q497V5 S1 RNA-binding domain-containing protein 1 [Mus musculus] 366 8e-116
Q8NIV6 Transcription elongation factor spt-6 [Neurospora crassa (... 122 3e-31
Q8UVK2 Transcription elongation factor SPT6 [Danio rerio] 105 1e-25
Q62383 Transcription elongation factor SPT6 [Mus musculus] 95.9 8e-23
Q7KZ85 Transcription elongation factor SPT6 [Homo sapiens] 95.5 1e-22
Q9W420 Transcription elongation factor SPT6 [Drosophila melanogas... 89.0 1e-20
P34703 Suppressor of Ty 6 homolog [Caenorhabditis elegans] 86.7 5e-20
A8J637 Polyprotein of EF-Ts, chloroplastic [Chlamydomonas reinhar... 80.9 3e-18
Q8CWR9 Small ribosomal subunit protein bS1 [Streptococcus pneumon... 79.0 3e-18
>P57072 Uncharacterized protein NMA0194 [Neisseria meningitidis
serogroup A / serotype 4A (strain DSM 15465 / Z2491)]
Length=757
Score = 756 bits (1952), Expect = 0.0
Identities = 402/742 (54%), Positives = 533/742 (72%), Gaps = 11/742 (1%)
Query 15 DLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLR 74
++ Q L+ EL+ Q+ AA+ L+D+GA+VPFIARYRKE T GLDDTQLR+L RL YLR
Sbjct 2 NITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGGLDDTQLRRLAERLQYLR 61
Query 75 DLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLG 134
+L ER+ V++S++EQ KLSDDL A++ AA+ K +LE++Y PY+PKR +K+ ARE GL
Sbjct 62 ELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYLPYKPKRRTKAQIAREHGLQ 121
Query 135 PIAEQILNEQIEPTEALA-GFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAK 193
P+A+ +L EQ + EA A G+ +E+ D+++ LD + I+++ +A++ L L+
Sbjct 122 PLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAILMEQFAEDAELIGTLRDKLWN 181
Query 194 TATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDGE-DD 252
A + + V ++ E G+KF DYF+ E + +PSHR LA+LRGR E VL + + + DD
Sbjct 182 EAEIHAQVVGGKETE-GEKFSDYFDHREPIRAMPSHRALAVLRGRNEGVLNIALKYQPDD 240
Query 253 APIARIETEYN---LDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEAM 309
PI + ++EY + + +L+ T +L W KI +E L + AA+ +A+
Sbjct 241 TPITQ-QSEYEQIIARRFKVSDGHKWLRDTVRLTWRAKIFLSLELEALNRLKEAADTDAI 299
Query 310 QVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEG 369
VFA NL+ LLL+APAG TTLG+DPG R GVK AVV D G +L +Y +
Sbjct 300 TVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCAVVDDTGKLLDTVIVY----LHQENN 355
Query 370 SIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYSAS 429
+A L+RL +++ V L+AIGNGTASRET+ + +++ + + L ++ VSEAGAS+YSAS
Sbjct 356 MLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVREMSKMGLHKIVVSEAGASIYSAS 415
Query 430 ELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLDAV 489
ELAA E P+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQ+ LAK+LDAV
Sbjct 416 ELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQSQLAKSLDAV 475
Query 490 VEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGERT 549
VEDCVNAVGVDVNTAS+ +L I+GLN+ +AQ IV YR ENG FD+R+ L KVPRLGE+T
Sbjct 476 VEDCVNAVGVDVNTASAPLLARISGLNQTLAQNIVAYRDENGAFDSRKKLLKVPRLGEKT 535
Query 550 FEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADDFV 609
FEQAAGFLRI G EPLDASAVHPE+Y +V KM+ + + ++IGN E ++QIKA DF
Sbjct 536 FEQAAGFLRINGGKEPLDASAVHPEAYPVVAKMLAQQGISAAELIGNRERVKQIKASDFT 595
Query 610 DEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVTNFGA 669
DE+FGLPTI D+L+ELEKPGRDPR EF+TA F E I EI+ L GM LEGVV+NV NFGA
Sbjct 596 DERFGLPTILDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGA 655
Query 670 FVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGAEA 729
FVDIGVHQDGLVHIS L+N+FV DP +VVK G +V+V+V++VDA RKR+ L+MR +
Sbjct 656 FVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
Query 730 PAKTQRPPRREQQEQRGERKPQ 751
AK + P +E+ RKPQ
Sbjct 716 GAKHKMPSENRSRERTAGRKPQ 737
>Q51152 Uncharacterized protein NMB0075 [Neisseria meningitidis
serogroup B (strain MC58)]
Length=757
Score = 755 bits (1950), Expect = 0.0
Identities = 403/742 (54%), Positives = 531/742 (72%), Gaps = 11/742 (1%)
Query 15 DLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLR 74
++ Q L+ EL+ Q+ AA+ L+D+GA+VPFIARYRKE T GLDDTQLR+L RL YLR
Sbjct 2 NITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGGLDDTQLRRLAERLQYLR 61
Query 75 DLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLG 134
+L ER+ V++S++EQ KLSDDL A++ AA+ K +LE++Y PY+PKR +K+ ARE GL
Sbjct 62 ELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYLPYKPKRRTKAQIAREHGLQ 121
Query 135 PIAEQILNEQIEPTEALA-GFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAK 193
P+A+ +L EQ + EA A G+ +E+ D+++ LD + I+++ +A++ L L+
Sbjct 122 PLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAILMEQFAEDAELIGTLRDKLWN 181
Query 194 TATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDGE-DD 252
A + + V ++ E G+KF DYF+ E + +PSHR LA+LRGR E VL + + + DD
Sbjct 182 EAEIHAQVVEGKETE-GEKFSDYFDHREPVRTMPSHRALAVLRGRNEGVLNIALKYQPDD 240
Query 253 APIARIETEYN---LDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEAM 309
PI R ++EY + + +L+ T +L W KI +E L + AA+ +A+
Sbjct 241 TPITR-QSEYEQIIACRFKVSDGHKWLRDTVRLTWRAKIFLSLELEALGRLKEAADTDAI 299
Query 310 QVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEG 369
VFA NL+ LLL APAG TTLG+DPG R GVK AVV D G +L +Y +
Sbjct 300 TVFARNLKDLLLVAPAGRLTTLGLDPGYRNGVKCAVVDDTGKLLDTVIVY----LHQENN 355
Query 370 SIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYSAS 429
+A L+RL +++ V L+AIGNGTASRET+ + +++ ++ L ++ VSEAGAS+YSAS
Sbjct 356 MLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVRGMPEMGLHKIVVSEAGASIYSAS 415
Query 430 ELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLDAV 489
ELAA E P+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQ LAK+LDAV
Sbjct 416 ELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQNQLAKSLDAV 475
Query 490 VEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGERT 549
VEDCVNAVGVDVNTAS+ +L I+GLN+ +AQ IV YR ENG FD+R+ L KVPRLGE+T
Sbjct 476 VEDCVNAVGVDVNTASAPLLARISGLNQTLAQNIVAYRDENGAFDSRKKLLKVPRLGEKT 535
Query 550 FEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADDFV 609
FEQAAGFLRI G EPLDASAVHPE+Y +V KM+ + + ++IGN E ++QIKA DF
Sbjct 536 FEQAAGFLRINGGKEPLDASAVHPEAYPVVAKMLAQQGISAAELIGNRERVKQIKASDFT 595
Query 610 DEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVTNFGA 669
DE+FGLPTI D+L+ELEKPGRDPR EF+TA F E I EI+ L GM LEGVV+NV NFGA
Sbjct 596 DERFGLPTILDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGA 655
Query 670 FVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGAEA 729
FVDIGVHQDGLVHIS L+N+FV DP +VVK G +V+V+V++VDA RKR+ L+MR +
Sbjct 656 FVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
Query 730 PAKTQRPPRREQQEQRGERKPQ 751
AK + P +E+ RKPQ
Sbjct 716 GAKHKMPSENRSRERTAGRKPQ 737
>Q45388 Protein tex [Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251)]
Length=791
Score = 750 bits (1937), Expect = 0.0
Identities = 405/764 (53%), Positives = 532/764 (70%), Gaps = 21/764 (3%)
Query 16 LVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLRD 75
++ QLA+E+ R +QV +A+ L+D+GA+VPFIARYRKE T GLDD LR L+ RL YLR+
Sbjct 19 IIAQLATEIGARASQVASAVELLDDGATVPFIARYRKEATGGLDDGALRTLEVRLGYLRE 78
Query 76 LYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLGP 135
L ERR ++ES+ +Q KL+ +L + AETK LE++YAPY+PKR +++ AREAGL P
Sbjct 79 LEERRGAILESITQQGKLTPELQQEIATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEP 138
Query 136 IAEQILNEQI-EPTEALAGFSHEDYS--DSESQLDAIQHIIIDDWAQNIALTTELKALFA 192
+A+ IL + +P A + + + S D+++ LD + I+ + A+N L +++
Sbjct 139 LADAILADPACDPAALAAQYLNPEASINDAKAALDGARDILAERHAENADLLADIREHLW 198
Query 193 KTATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVL----GLKVD 248
T L S + ++ + G FRD+F+F+E L +PSHR+LA++RGRQ+ VL GL+ D
Sbjct 199 STGLLYSKMVEGKETD-GANFRDWFDFNEPLRTLPSHRILALMRGRQQGVLELRVGLEAD 257
Query 249 GEDDAP---IARIETEYNLDQ------VQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTE 299
E + P + RI + L P+AR +L + + W K+ E L
Sbjct 258 LEAETPHPCVVRIASFLKLGNGLFALDATPRAR--WLGEVCRWTWRVKLLTAFESELFGR 315
Query 300 KRLAAEAEAMQVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIY 359
R +AEAEA++VFA NL+ LLL+APAG +T LG+DPGIRTG K+AV+ G V+ +T+Y
Sbjct 316 LRESAEAEAIRVFAANLKDLLLAAPAGPKTVLGLDPGIRTGCKVAVIDRTGKVVDTATVY 375
Query 360 PFAPKEDKEGSIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVS 419
PF P+ D+EG+I LA L + V+L+AIGNGTASRE+E ++ DMMA DL LTRV VS
Sbjct 376 PFEPRRDREGTIKTLAALAARHKVELIAIGNGTASRESEKLVGDMMARFPDLALTRVVVS 435
Query 420 EAGASVYSASELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQ 479
EAGASVYSASE AA E P+LDV++RGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDVNQ
Sbjct 436 EAGASVYSASETAALEFPDLDVTLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQ 495
Query 480 TGLAKTLDAVVEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSL 539
LA++LDAVVEDCVNAVGVDVNTAS+A+L ++GLN +A+ IV +R ENG F TR L
Sbjct 496 RELARSLDAVVEDCVNAVGVDVNTASAALLARVSGLNTLLAKNIVAWRDENGAFPTRDML 555
Query 540 KKVPRLGERTFEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEI 599
+KVPR GE+ FEQAAGFLRI NG PLDASAVHPE+Y +VE++V V+ IIG E
Sbjct 556 RKVPRFGEKAFEQAAGFLRIPNGDNPLDASAVHPEAYPVVERIVARIKADVRHIIGQREA 615
Query 600 IRQIKADDFVDEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEG 659
++ + DF DE+FGLPT++D+ AELEKPGRDPRPEF+TA+F+E + + L GM LEG
Sbjct 616 LKGVSPSDFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEG 675
Query 660 VVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVN 719
VVTNV NFGAFVDIGVHQDGLVHIS LA +FV DP VV+ GQ V V+V++VD RKRV
Sbjct 676 VVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVARKRVA 735
Query 720 LSMRPEGAEAPAK--TQRPPRREQQEQRGERKPQPKRPQAARSN 761
L+MR A PA+ + RG R+PQ + A +N
Sbjct 736 LTMRLNDAAEPARRGNGAGAGAARGADRGARRPQADNGKGAPAN 779
>Q51062 Transcriptional accessory protein Tex [Neisseria gonorrhoeae]
Length=757
Score = 750 bits (1937), Expect = 0.0
Identities = 401/742 (54%), Positives = 530/742 (71%), Gaps = 11/742 (1%)
Query 15 DLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLR 74
++ + L+ EL+ Q+ AAI L+D+GA+VPFIARYRKE T GLDDTQLRQL RL YLR
Sbjct 2 NITRILSQELSATTVQINAAIELLDDGATVPFIARYRKEATGGLDDTQLRQLAERLQYLR 61
Query 75 DLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLG 134
+L ER+ V++S++EQ KLSDDL A++ AA+ K +LE++Y PY+PKR +K+ A E GL
Sbjct 62 ELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYLPYKPKRRTKAQIAHEHGLQ 121
Query 135 PIAEQILNEQIEPTEALA-GFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAK 193
P+A+ +L EQ + EA A G+ +E+ D+++ LD + I+++ +A++ L L+
Sbjct 122 PLADVLLAEQPQDVEAAAQGYLNENIPDAKAALDGARAILMEQFAEDAELIGTLRDKLWN 181
Query 194 TATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDGE-DD 252
A + + V ++ E G+KF DYF+ E + +PSHR LA+LRGR E VL + + + DD
Sbjct 182 EAEIHTQVVEGKETE-GEKFSDYFDRREPVRAMPSHRALAVLRGRNEGVLNIALKYQPDD 240
Query 253 APIARIETEYN---LDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEAM 309
PI + ++EY + + +L+ T +L W KI +E L + AA+ +A+
Sbjct 241 TPITQ-QSEYEQIIARRFKVSDGHKWLRDTVRLTWRAKIFLSLELEALNRLKEAADTDAI 299
Query 310 QVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEG 369
VFA NL+ LLL+APAG TTLG+DPG R GVK AVV D G +L +Y +
Sbjct 300 TVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCAVVDDTGKLLDTVIVY----LHQENN 355
Query 370 SIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYSAS 429
+A L+RL +++ V L+AIGNGTASRET+ + +++ + +L ++ VSEAGAS+YSAS
Sbjct 356 MLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVRGMPESSLHKIVVSEAGASIYSAS 415
Query 430 ELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLDAV 489
ELAA E P+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQ+ LAK+LDAV
Sbjct 416 ELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQSRLAKSLDAV 475
Query 490 VEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGERT 549
VEDCVNAVGVD NTAS+ +L I+GLN+ +AQ IV YR ENG FD+R+ L KVPRLGE+T
Sbjct 476 VEDCVNAVGVDANTASAPLLARISGLNQTLAQNIVAYRDENGAFDSRKKLLKVPRLGEKT 535
Query 550 FEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADDFV 609
FEQAAGFLRI G EPLDASAVHPE+Y +V KM+ + T ++IGN E ++QIKA DF
Sbjct 536 FEQAAGFLRINGGKEPLDASAVHPEAYPVVAKMLAQQGITAAELIGNRERVKQIKASDFT 595
Query 610 DEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVTNFGA 669
DE+FGLPTI D+L+ELEKPGRDPR F+TA F E I EI+ L GM LEGVV+NV NFGA
Sbjct 596 DERFGLPTILDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGA 655
Query 670 FVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGAEA 729
FVDIGVHQDGLVHIS L+N+FV DP +VVK G +V+V+V++VDA RKR+ L+MR +
Sbjct 656 FVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
Query 730 PAKTQRPPRREQQEQRGERKPQ 751
AK + P +E+ RKPQ
Sbjct 716 GAKHKMPSENRSRERTAGRKPQ 737
>P46837 Protein YhgF [Escherichia coli (strain K12)]
Length=773
Score = 736 bits (1900), Expect = 0.0
Identities = 395/756 (52%), Positives = 521/756 (69%), Gaps = 21/756 (3%)
Query 20 LASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLRDLYER 79
+A E+ RP QV+AA+RL+DEG +VPFIARYRKE+T GLDDTQLR L+TRLSYLR+L ER
Sbjct 10 IAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLSYLRELEER 69
Query 80 REKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLGPIAEQ 139
R+ +++S+ EQ KL+DDL +NA +K LE++Y PY+PKR ++ A EAGL P+A+
Sbjct 70 RQAILKSISEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADL 129
Query 140 ILNEQIEPTEALAG---FSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKTAT 196
+ ++ E A ++ + +D+++ LD ++I+++ +A++ AL +++ K A
Sbjct 130 LWSDPSHTPEVAAAQYVYADKGVADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAH 189
Query 197 LKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDGE---DDA 253
L S V S K+E G KFRDYF+ E L+ VPSHR LAM RGR E VL L ++ + D+
Sbjct 190 LVSTVVSG-KEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLNADPQFDEP 248
Query 254 PIARIETEYNLD----QVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEAM 309
P + +D ++ + K W K+ +E L+ R AE EA+
Sbjct 249 PKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAI 308
Query 310 QVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEG 369
VFA NL LL++APAG R T+G+DPG+RTGVK+AVV G ++A TIYP + K
Sbjct 309 NVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTGQAAK-- 366
Query 370 SIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYSAS 429
+ +A LC ++NV+LVAIGNGTASRETE D+ + +V VSEAGASVYSAS
Sbjct 367 AAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSAS 426
Query 430 ELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLDAV 489
ELAA E P+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDV+QT LA+ LDAV
Sbjct 427 ELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAV 486
Query 490 VEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGERT 549
VEDCVNAVGVD+NTAS +L +AGL + +AQ IV +R ENG+F RQ L KV RLG +
Sbjct 487 VEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKA 546
Query 550 FEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADDFV 609
FEQ AGFLRI +G PLDAS VHPE+Y +VE+++ A +KD++GNS +R +KA DF
Sbjct 547 FEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFT 606
Query 610 DEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVTNFGA 669
DEKFG+PT+ D++ ELEKPGRDPRPEF+TA+F + + + L GM LEG VTNVTNFGA
Sbjct 607 DEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGA 666
Query 670 FVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGAEA 729
FVDIGVHQDGLVHIS L+N+FV DPH VVK G IV+V+V++VD +RKR+ L+MR +
Sbjct 667 FVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLD---- 722
Query 730 PAKTQRPPRREQQEQRGERKPQPKRPQAARSNDQAK 765
++P + G +PQ RP A +A+
Sbjct 723 ----EQPGETNARRGGGNERPQNNRPAAKPRGREAQ 754
>P71353 Uncharacterized protein HI_0568 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=762
Score = 730 bits (1885), Expect = 0.0
Identities = 388/748 (52%), Positives = 524/748 (70%), Gaps = 20/748 (3%)
Query 18 QQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLRDLY 77
Q +A+EL V+P Q+ AAI+L+D+G ++PFIARYRKE T GLDDTQLR +TRL YLR+L
Sbjct 8 QIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELE 67
Query 78 ERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLGPIA 137
+RR+ +++S++EQ KL+D+L +++A ++K LE++Y PY+PKR +K A EAGL P+A
Sbjct 68 DRRQTILKSIEEQGKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLA 127
Query 138 EQILNE-QIEPTEALAGF--SHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKT 194
+ NE + +P F + + +DS++ LD + I+++ +A++ L +++ AK
Sbjct 128 NLLWNEPKNDPESTALSFVDAEKGVADSKAALDGARIILMERFAEDAGLLAKVRDYLAKN 187
Query 195 ATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDGEDDAP 254
A + S V ++ E G KF+DYF+ E L VPSHR LAM RGR E +L L ++ + DA
Sbjct 188 AVIVSKVIEGKETE-GAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLNADPDAE 246
Query 255 -------IARIETEYNLDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAE 307
I +Y + Q + +Q W K+ +E L+ R AE E
Sbjct 247 EGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEE 306
Query 308 AMQVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDK 367
A+ VFA NL LL++APAG ++T+G+DPG+RTGVK+A+V + G +L +TIYP +E
Sbjct 307 AIDVFARNLTALLMAAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPHTGRE-A 365
Query 368 EGSIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYS 427
E +A + L R++NV+L+AIGNGTASRETE D++ + V VSEAGASVYS
Sbjct 366 EAQVA-IFSLIRKHNVELIAIGNGTASRETERFAKDVIKEIKENKPQTVVVSEAGASVYS 424
Query 428 ASELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLD 487
ASE AA E P LDVS+RGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDVNQT LA+ LD
Sbjct 425 ASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLARKLD 484
Query 488 AVVEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGE 547
AVVEDCVNAVGVD+NTAS+ +L +AG+ K +AQ IVEYR ENGRF++R LKKVPRLG
Sbjct 485 AVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVPRLGP 544
Query 548 RTFEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADD 607
+ FEQ AGF+RI NG PLDAS VHPE+Y +VEK+++A A +++D++ N+ ++RQ+ A
Sbjct 545 KAFEQCAGFMRIANGKNPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQLDAKQ 604
Query 608 FVDEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVTNF 667
F+DE+FGLPT+QD+ ELEKPGRDPR EF+TA F E + EI L GM LEG VTNVTNF
Sbjct 605 FIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF 664
Query 668 GAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGA 727
GAFVDIGVHQDGLVHIS L+++FV DPH+VVK G IV+V+V++VD RKR+ L+MR + +
Sbjct 665 GAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDES 724
Query 728 EAPAKTQ-------RPPRREQQEQRGER 748
++ RP Q+E R R
Sbjct 725 AVKNDSKSDRTLSTRPRGNMQREARNSR 752
>O31489 Uncharacterized protein YdcI [Bacillus subtilis (strain
168)]
Length=719
Score = 538 bits (1385), Expect = 0.0
Identities = 303/717 (42%), Positives = 451/717 (63%), Gaps = 16/717 (2%)
Query 16 LVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLRD 75
L QQ+A E+ + VE+ IRL+++G +VPFIARYRKE T +D+ Q++ + R Y+++
Sbjct 7 LKQQIAKEIGLSQKHVESVIRLLEDGNTVPFIARYRKEQTGSMDEVQIQTISERWQYIQN 66
Query 76 LYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRPKRTSKSFKAREAGLGP 135
L +R+E+VI + EQ+KL+D+L ++ + +E++Y PY+ KR +K+ A+ GL P
Sbjct 67 LNQRKEEVIRLIAEQDKLTDNLKRKIEQSVKLQEVEDLYRPYKQKRKTKATVAKSKGLEP 126
Query 136 IAEQILNEQIEPTEALAGFSHEDYSDS------ESQLDAIQHIIIDDWAQNIALTTELKA 189
+A+ IL + + LA + + S+ E ++ +HII + + ++
Sbjct 127 LADYILT--LPQDDHLAATADQYISEEKEVFTREEAIEGAKHIIAEQISDEPTFRKWIRQ 184
Query 190 LFAKTATLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLKVDG 249
K T+KSA + + Y+E+ E + KV HR+LAM RG +E++L + ++
Sbjct 185 ETFKRGTIKSAAGKSADTDEKNVYEMYYEYEEPIAKVVPHRVLAMNRGEKEDILKVAIEP 244
Query 250 EDDAPIARIETEYNLDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEAM 309
D A +E + + + + + ++ L++T + + I+P IE + E A+ +A+
Sbjct 245 PADHIKAYLEKQ--IIKNRSTSVREILQETIEDSYKRLIQPAIEREIRKELSEKADEQAI 302
Query 310 QVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEG 369
+F+ENLR LLL P G+T LGVDP RTG KLAV + G VL IYP AP +
Sbjct 303 HIFSENLRKLLLQPPMKGKTVLGVDPAFRTGCKLAVSDETGKVLKIDVIYPHAPVNKTKE 362
Query 370 SIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAANTDLNLTRVTVSEAGASVYSAS 429
+ ++ ++ +Y V++VAIGNGTASRETE I +++ + + V V+EAGASVYSAS
Sbjct 363 AHEKVKKILEQYQVEMVAIGNGTASRETEQFIVNVLR-DMPRKIYYVIVNEAGASVYSAS 421
Query 430 ELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQTGLAKTLDAV 489
ELA E P+L V R AVSIARRLQDPLAELVKIDPKS+GVGQYQHDV+Q L ++L V
Sbjct 422 ELAREEFPDLKVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLRFV 481
Query 490 VEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQSLKKVPRLGERT 549
VE VN VGV+VNTAS+A+L Y+AGL+K++A +V+ R+E G+F R+ LK +PRLG +T
Sbjct 482 VETVVNQVGVNVNTASAALLQYVAGLSKSVAGNVVKKREEIGKFSNRKELKDIPRLGAKT 541
Query 550 FEQAAGFLRIQNGSEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEI---IRQIKAD 606
+EQ GFLR+Q G+EPLD + +HPESY + +++ K + IG +E+ I Q+
Sbjct 542 YEQCIGFLRVQEGTEPLDRTGIHPESYKETKALLK-KLGLSTEHIGTAELKDKINQLALS 600
Query 607 DFVDE-KFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGMQLEGVVTNVT 665
+ E G T++D+ +L +P RDPR + + D+ ++ L EGM+L+G V NV
Sbjct 601 ETAKELGIGEITLKDICEQLTRPERDPRDKVPKPLLKTDVLQLEDLKEGMELQGTVRNVV 660
Query 666 NFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSM 722
+FGAFVDIGV QDGLVHIS+L+N+FV P VV G IV V V VD ++ RV+LSM
Sbjct 661 DFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717
>Q5RDI0 S1 RNA-binding domain-containing protein 1 [Pongo abelii]
Length=995
Score = 372 bits (955), Expect = 7e-118
Identities = 270/798 (34%), Positives = 404/798 (51%), Gaps = 87/798 (11%)
Query 4 NLILVESNTMTDLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQL 63
N I E D+VQ L+ + P IRL ++ ++PFI RYRKE+ LD L
Sbjct 202 NHIKEEVEMNWDIVQVLSERTNIEPWVCTNTIRLFNDDNTIPFIIRYRKELINNLDADSL 261
Query 64 RQLDTRLSYLRDLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRP-KRT 122
R++ L LR + ++ I+ +K++ K+S+ LL + +T LE + APY+ +
Sbjct 262 REVQQTLEELRAVAKKVHSTIQKIKKEGKMSECLLKAMLNCKTFEELEHVSAPYKTGSKG 321
Query 123 SKSFKAREAGLGPIAEQILNEQIEPTEALAGFSHEDYSDSESQLD---AIQHIIIDDWAQ 179
+K+ +AR+ GL A +L + E + L + D + D QHI+ D A+
Sbjct 322 TKAQRARQLGLEGAARALLEKPGELS--LLSYIRPDVKGLSTLQDIEIGAQHILADMIAK 379
Query 180 NIALTTELKALFA-KTATLKSAVASDEKKEVGKKFRDYF----EFSENLNKVPSHRLLAM 234
+ ++ L + ++S++A K+V +K D F FS N+ + H++LA+
Sbjct 380 DKGTLDFIRNLCQNRHVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQILAI 439
Query 235 LRGRQENVLGLKV---DG-EDDAPIARIETEYNLDQVQPQARQDFLKQTAKLFWLGKIRP 290
RG VL +KV DG +D+ I+ + L+ + + I P
Sbjct 440 NRGENLKVLTVKVNISDGVKDEFCRWCIQNRWRPRSFARPELMKILRNSLNDSFKRLIYP 499
Query 291 QIEHSLLTEKRLAAEAEAMQVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAG 350
+ + AE E++ +F NLR LLL++P GRT +GVDPG + G KLA++S
Sbjct 500 LLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTS 559
Query 351 DVLAHSTIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAAN-- 408
+L +Y + +E ++ L +N V IGNGTA RETEA AD++ N
Sbjct 560 QILHTDVVYLHCGQGFREAE--KIKMLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYF 617
Query 409 TDLNLTRVTVSEAGASVYSASELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSI 468
L++ VSEAGAS+YS S A E+P LD ++R AVSIARR+QDPLAELVKI+PK I
Sbjct 618 APLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHI 677
Query 469 GVGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRK 528
GVG YQHDV+QT L TLD+VVE+CV+ VGVD+N S +L +IAGLN A+ I+E+R+
Sbjct 678 GVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWRE 737
Query 529 ENGRFDTRQSLKKVPRLGERTFEQAAGFLRIQNG-------------------------- 562
+NG F R+ LKKV LG ++F+Q AGF+RI
Sbjct 738 KNGPFINREQLKKVKGLGPKSFQQCAGFIRINQDYIQTFCSQQTETSGQIQGVAVTSSAD 797
Query 563 ----------------------SEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEII 600
PLD + +HPESY + + + + T+ + IG E+
Sbjct 798 VEVTNEKQGKKKSKTVANVLLKPNPLDQTCIHPESYDIAMRFLSSIGGTLYE-IGKPEM- 855
Query 601 RQIKADDFVDEKFGLP-----------TIQDVLAELEKP-GRDPRPEFRTAKFREDITEI 648
Q K + F+ EK G+ T+Q ++ L +P D R +F F+ I +
Sbjct 856 -QQKINSFL-EKEGMEKIAERLQTTVHTLQVIIDGLSQPESFDFRTDFDKPDFKRSIVCL 913
Query 649 AQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHK----VVKPGQIV 704
L G L G V N T FG FVDIGV + GL+ I + +S K + PG+ V
Sbjct 914 KDLQVGTVLTGKVENATLFGIFVDIGVGKSGLIPIRNVTEAKLSKTKKRRSLGLGPGERV 973
Query 705 QVRVIQVDAERKRVNLSM 722
+V+V+ +D R R+ L +
Sbjct 974 EVQVLNIDIPRSRITLDL 991
>Q8N5C6 S1 RNA-binding domain-containing protein 1 [Homo sapiens]
Length=995
Score = 372 bits (955), Expect = 7e-118
Identities = 268/792 (34%), Positives = 406/792 (51%), Gaps = 97/792 (12%)
Query 15 DLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLR 74
D+VQ L+ + P IRL ++ ++PFI RYRKE+ LD LR++ L LR
Sbjct 213 DMVQVLSERTNIEPWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVQQTLEELR 272
Query 75 DLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRP-KRTSKSFKAREAGL 133
+ ++ I+ +K++ K+S+ LL + +T LE + APY+ + +K+ +AR+ GL
Sbjct 273 AVAKKVHSTIQKIKKEGKMSECLLKAMLNCKTFEELEHVSAPYKTGSKGTKAQRARQLGL 332
Query 134 GPIAEQILNEQIEPTEALAGFSHEDYSDSESQLD---AIQHIIIDDWAQNIALTTELKAL 190
A +L + E + L + D + D +QHI+ D A++ ++ L
Sbjct 333 EGAARALLEKPGELS--LLSYIRPDVKGLSTLQDIEIGVQHILADMIAKDKDTLDFIRNL 390
Query 191 FAKT-ATLKSAVASDEKKEVGKKFRDYF----EFSENLNKVPSHRLLAMLRGRQENVLGL 245
K ++S++A K+V +K D F FS N+ + H++LA+ RG VL +
Sbjct 391 CQKRHVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQILAINRGENLKVLTV 450
Query 246 KVDGEDDAPIARIETEY------NLDQVQPQARQDFLK---QTAKLFWLGKIRPQIEHSL 296
KV+ D ++ E+ N + + AR + +K + + I P +
Sbjct 451 KVNISDG-----VKDEFCRWCIQNRWRPRSFARPELMKILYNSLNDSFKRLIYPLLCREF 505
Query 297 LTEKRLAAEAEAMQVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGDVLAHS 356
+ AE E++ +F NLR LLL++P GRT +GVDPG + G KLA++S +L
Sbjct 506 RAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTD 565
Query 357 TIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAAN--TDLNLT 414
+Y + +E ++ L +N V IGNGTA RETEA AD++ N L++
Sbjct 566 VVYLHCGQGFREAE--KIKTLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVV 623
Query 415 RVTVSEAGASVYSASELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQ 474
VSEAGAS+YS S A E+P LD ++R AVSIARR+QDPLAELVKI+PK IGVG YQ
Sbjct 624 YCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQ 683
Query 475 HDVNQTGLAKTLDAVVEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKENGRFD 534
HDV+QT L TLD+VVE+CV+ VGVD+N S +L +IAGLN A+ I+E+R++NG F
Sbjct 684 HDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFI 743
Query 535 TRQSLKKVPRLGERTFEQAAGFLRIQNG-------------------------------- 562
R+ LKKV LG ++F+Q AGF+RI
Sbjct 744 NREQLKKVKGLGPKSFQQCAGFIRINQDYIRTFCSQQTETSGQIQGVAVTSSADVEVTNE 803
Query 563 ----------------SEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKAD 606
PLD + +HPESY + + + + T+ + +G E+ Q K +
Sbjct 804 KQGKKKSKTAVNVLLKPNPLDQTCIHPESYDIAMRFLSSIGGTLYE-VGKPEM--QQKIN 860
Query 607 DFVDEKFGLP-----------TIQDVLAELEKP-GRDPRPEFRTAKFREDITEIAQLTEG 654
F+ EK G+ T+Q ++ L +P D R +F F+ I + L G
Sbjct 861 SFL-EKEGMEKIAERLQTTVHTLQVIIDGLSQPESFDFRTDFDKPDFKRSIVCLEDLQIG 919
Query 655 MQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHK----VVKPGQIVQVRVIQ 710
L G V N T FG FVDIGV + GL+ I + +S K + PG+ V+V+V+
Sbjct 920 TVLTGKVENATLFGIFVDIGVGKSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLN 979
Query 711 VDAERKRVNLSM 722
+D R R+ L +
Sbjct 980 IDIPRSRITLDL 991
>Q497V5 S1 RNA-binding domain-containing protein 1 [Mus musculus]
Length=982
Score = 366 bits (940), Expect = 8e-116
Identities = 265/786 (34%), Positives = 412/786 (52%), Gaps = 93/786 (12%)
Query 15 DLVQQLASELAVRPNQVEAAIRLIDEGASVPFIARYRKEVTQGLDDTQLRQLDTRLSYLR 74
D+VQ L+ + P IRL ++ ++PFI RYRKE+ LD LR++ L LR
Sbjct 208 DVVQVLSERTNIEPWVCANIIRLFNDDNTIPFIVRYRKELINNLDADFLREVRQTLDELR 267
Query 75 DLYERREKVIESLKEQNKLSDDLLARVNAAETKNSLEEIYAPYRP-KRTSKSFKAREAGL 133
D+ ++ I+ +K++ K+S+ LL + +T LE + APY+ + +K+ +A++ GL
Sbjct 268 DVAKKVHSRIQKIKKEGKMSECLLQALLNCKTFEELEHVSAPYKMGSKGTKAQRAKQLGL 327
Query 134 GPIAEQILNEQ--------IEPTEALAGFSHEDYSDSESQLDAIQHIIIDDWAQNIALTT 185
A +L I+P + G S + +D E+ +QHI+ D A++
Sbjct 328 EGAAWTLLENPGQLNLLSYIKPD--VKGLS--ELNDIET---GVQHILADMIAKDKDTLD 380
Query 186 ELKALFA-KTATLKSAVASDEKKEVGKK----FRDYFEFSENLNKVPSHRLLAMLRGRQE 240
++ L + ++S++A K+V +K F+ Y FS N+ + H++LA+ RG
Sbjct 381 FIRGLCKHRYICIQSSLAKVSSKKVNEKEVDKFQLYQNFSCNIRTIHHHQILAINRGENL 440
Query 241 NVLGLKVDGEDDAPIARIETEYNLDQVQPQ------ARQDFLK---QTAKLFWLGKIRPQ 291
+L +KV+ D ++ E+ +Q + AR + +K + + I P
Sbjct 441 KILTVKVNISDG-----VKNEFCRWCIQNRWRPRGFARPELMKILHNSLDDSFKRLIVPL 495
Query 292 IEHSLLTEKRLAAEAEAMQVFAENLRHLLLSAPAGGRTTLGVDPGIRTGVKLAVVSDAGD 351
+ + AE +++ +F +NLR LLL++P GRT +GVDPG + G KLA++S
Sbjct 496 LCREFRAKLTSDAEKQSVMMFGQNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQ 555
Query 352 VLAHSTIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNGTASRETEAVIADMMAAN--T 409
+L +Y + +E ++ RL +N V IGNGTA RETEA AD++ N
Sbjct 556 ILHTDVVYLHCGQGFREAE--KIKRLLLHFNCRTVVIGNGTACRETEAYFADLIMKNYFA 613
Query 410 DLNLTRVTVSEAGASVYSASELAAAELPELDVSIRGAVSIARRLQDPLAELVKIDPKSIG 469
L++ VSEAGAS+YS S A E+P LD ++R AVSIARR+QDPLAELVK DPK IG
Sbjct 614 PLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDPKHIG 673
Query 470 VGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTASSAILGYIAGLNKAIAQQIVEYRKE 529
VG YQHDV+QT L TLD+VVE+CV+ VGVD+N S +L +IAGLN A+ I+E+R++
Sbjct 674 VGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREK 733
Query 530 NGRFDTRQSLKKVPRLGERTFEQAAGFLRIQNG--------------------------- 562
NG F R+ LKKV LG ++F+Q AGF+RI
Sbjct 734 NGPFINREQLKKVKGLGPKSFQQCAGFVRINQDYIRTFCSSQHTDSSGQSQETAMVTNEK 793
Query 563 -------------SEPLDASAVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKAD--- 606
PLD + +HPESY + + + T+ + IG E+ ++I
Sbjct 794 LGKKKNKADATLIPNPLDQTCIHPESYDIAVRFLSFIGGTMCE-IGKPEMQQKINVSLGK 852
Query 607 DFVDE-----KFGLPTIQDVLAELEKPGR-DPRPEFRTAKFREDITEIAQLTEGMQLEGV 660
+ ++E + + T+Q ++ L +P D R +F F+ I + L G L G
Sbjct 853 EGIEETAERLQTTVHTLQVIIDGLSQPKTFDIRTDFDKPDFKRSIVCLEDLQVGTVLTGK 912
Query 661 VTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHK----VVKPGQIVQVRVIQVDAERK 716
V N T FG FVDIGV + GL+ I + +S + + PG+ V+V+V+ VD R
Sbjct 913 VENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVKVLNVDIPRS 972
Query 717 RVNLSM 722
R++L +
Sbjct 973 RISLDL 978
Score = 21.9 bits (45), Expect = 3.4
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 0/44 (0%)
Query 730 PAKTQRPPRREQQEQRGERKPQPKRPQAARSNDQAKKPQRAKQE 773
P K RR+ + +RK P+ ++++ D K K+E
Sbjct 43 PQKKVPRNRRQPASKGSKRKQGPRAKKSSQQVDDESKDVAVKEE 86
>Q8NIV6 Transcription elongation factor spt-6 [Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987)]
Length=1402
Score = 122 bits (307), Expect = 3e-31
Identities = 124/500 (25%), Positives = 218/500 (44%), Gaps = 75/500 (15%)
Query 334 DPGIRTGVKLAVVSDAGDVLAHSTIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNGTA 393
DP R V + + G +L H T A E + ++AEL R D++ I +A
Sbjct 713 DPN-REPVSWVSMDEDGRILEHGTFTNLARDESQREALAELVR---RRQPDVIGISGFSA 768
Query 394 S-----RETEAVIADMMAANTDLN-----------LTRVTVSEAGASVYSASELAAAELP 437
++ E ++++ + + L + +++ A +Y S A A+ P
Sbjct 769 DTHRLIKDVEGLVSEKGLVGPEYDDPETNEYRSDLLEVIVINDEVARLYKDSPRAVADHP 828
Query 438 ELDVSIRGAVSIARRLQDPLAELVKI--DPKSIGVGQYQHDVNQTGLAKTLDAVVEDCVN 495
L+ R +++AR +Q+P+ E + D S+ + YQ + Q L K L+ + D VN
Sbjct 829 SLNPMTRYCIALARYMQNPMKEYAALGKDVTSLQIHPYQQYLPQAKLLKHLETAMVDMVN 888
Query 496 AVGVDVNTA-----SSAILGYIAGLNKAIAQQIVEYRKENGRFDTRQ-------SLKKVP 543
VGVD+N A ++ +L Y+AGL AQ +++ +NG T + K+P
Sbjct 889 LVGVDINVAMQDANTAHLLPYVAGLGPRKAQLLIKGINKNGGVVTSRDELVGDPERHKLP 948
Query 544 RLGERTFEQAAGFLRIQ-----NGSEPLDASAVHPESYSLVEKMV---------EAKATT 589
LG R + A FL I+ S+PLD + +HPE Y L K+ + KA T
Sbjct 949 VLGPRVWNNCASFLFIEYEPTNPESDPLDNTRIHPEDYDLARKVAADALGLDEEDVKAET 1008
Query 590 VKDIIGNSEIIRQIKADDFVDEKFGL------------------PTIQDVLAELEKPGRD 631
D G I+R++ DD D+ L T++ + AEL+ P +
Sbjct 1009 --DENGAGAIVRKLFKDDEQDKVNELILEEYAEQLEREYQQRKRATLETIRAELQVPYEE 1066
Query 632 PRPEFRTAKFREDITEIA-----QLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISEL 686
R +F + + T + L EGM + V V + A V + +G + ++
Sbjct 1067 LRKKFESLTVDQVFTMLTGENRDSLCEGMIVAANVRVVKDDFAIVKLDCGIEGRIESHDV 1126
Query 687 ANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMRPEGAEAPAKTQRPPRREQQEQRG 746
+ + V+ GQ+VQ ++I ++ + LSMR E P + R+Q + R
Sbjct 1127 S--YRHSIKDVLHVGQVVQAKLIDLNRKEFVSKLSMRDEEMRRPFRRHFDHGRDQWDYRK 1184
Query 747 ERKPQPKRPQAARSNDQAKK 766
E + + + + +S +A++
Sbjct 1185 EDEDREELREKDKSTGRAQR 1204
Score = 23.9 bits (50), Expect = 0.89
Identities = 16/66 (24%), Positives = 27/66 (41%), Gaps = 17/66 (26%)
Query 725 EGAEAPAKTQRPPRREQQEQRG-----------------ERKPQPKRPQAARSNDQAKKP 767
E ++A + +R RR ++E+ ERKPQP+R + +D
Sbjct 72 EDSDARERRRRKKRRREREEEEQLDEEDLDLIGEAIPEWERKPQPQRLKRGHRDDHRPTE 131
Query 768 QRAKQE 773
+R E
Sbjct 132 RRGLAE 137
Score = 23.5 bits (49), Expect = 1.2
Identities = 14/44 (32%), Positives = 18/44 (41%), Gaps = 0/44 (0%)
Query 570 AVHPESYSLVEKMVEAKATTVKDIIGNSEIIRQIKADDFVDEKF 613
AV PE + + K E +K + N RQ DF E F
Sbjct 589 AVRPELFLKMMKAEEEGLIEIKVSLENDREFRQQLFSDFASENF 632
>Q8UVK2 Transcription elongation factor SPT6 [Danio rerio]
Length=1726
Score = 105 bits (261), Expect = 1e-25
Identities = 173/810 (21%), Positives = 315/810 (39%), Gaps = 173/810 (21%)
Query 146 EPTEALAGFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKTATLKSAVASDE 205
EP E + ++ E+ L+ ++++ A+ + L+ F + A +
Sbjct 557 EPLELAKDYVCSQFNTPEAVLEGARYMVAMQIAREPLVRHVLRQTFQERAKINIKPTKKG 616
Query 206 KKEVGKKFRDY-FEFSEN--LNKVPSHRLLAMLRGRQENVLGLKVDGE--------DDAP 254
KK+V + Y F++ +N + ++ + L M +E +L + + + D
Sbjct 617 KKDVDEAHFAYSFKYLKNKPVKELSGDQFLKMCLAEEEGLLAIDICIDLVGVKGYGDQTY 676
Query 255 IARIETEYNLD----QVQPQARQDFL--KQTAKLFWLGKIRPQIEHSLLTEKRLAAEAEA 308
I+ Y D QVQ +Q L +++ + F ++ ++++ L+ E A+
Sbjct 677 FDEIKQFYYRDEFSHQVQEWNKQRTLAIERSLQQFLYPQMAKELKNKLIAE----AKDNI 732
Query 309 MQVFAENLRHLLLSAP------------------AGGRTTLGVD--PGIRTGVKLAVVSD 348
++ + L + L AP G LGV G T V ++++
Sbjct 733 VKSCCKKLYNWLKVAPYRPDQQVEEDDDLMDESQGKGIRVLGVAFASGRDTPVFCSLING 792
Query 349 AGDVLAHSTIYPFAPK---------EDKEGSIAELARLCREYNVDLVAIGNGTASRETEA 399
G+V+ + F + E K+ + L + +VA+ +R+
Sbjct 793 EGEVVDFLRLPYFLKRRNAWREDEREKKQQDVENLKKFLLSKKPHVVAVSG--ENRDAHM 850
Query 400 VIADM------MAANTDLNLTRVT-VSEAGASVYSASELAAAELPELDVSIRGAVSIARR 452
V+ D+ + N+ L + V V A +Y S+ + A+ + +R AVS+AR+
Sbjct 851 VMEDIKRTISELEQNSSLPVVGVELVDNELAVLYMNSKKSEADFRDYPPLLRQAVSVARK 910
Query 453 LQDPLAELVKI-----DPKSIGVGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTA--- 504
+QDPL E ++ D + + Q V + L L + VN VGVDVN A
Sbjct 911 IQDPLVEFAQVCSTDDDILCLKLHPLQEHVVKEELLSALYCEFINRVNEVGVDVNRAIAH 970
Query 505 --SSAILGYIAGLNKAIAQQIVEYRKENG-RFDTRQSLKKVPRLGERTFEQAAGFLRIQN 561
+ +++ YI GL +++ K+N R + R L + +G + F AGF++I
Sbjct 971 PYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDT 1030
Query 562 GS---------EPLDASAVHPESYSLVEKM-VEA-----------KATTVKDIIGNSEII 600
S E LD S VHPE+Y KM V+A A +++I+ N E +
Sbjct 1031 ASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL 1090
Query 601 RQIKADDFVDE-------KFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTE 653
+ + D F +E G+ T+ D+ AEL +D R +R E + + T
Sbjct 1091 KDLDLDAFAEELERQGYGNKGI-TLYDIRAELSCRYKDLRAPYRPPNTEEVFNMLTKETP 1149
Query 654 -----GMQLEGVVTNVT-----------------------------NFGAFVDIGVHQD- 678
G + VVTN+ NF ++ H D
Sbjct 1150 ETFYIGKLITCVVTNIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDS 1209
Query 679 -------------------GLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVN 719
G + L+++ V P + VKPG V R++++D E+ V+
Sbjct 1210 GSCPGQAIGVRTRLDNAVMGFIPTKFLSDKVVKHPEERVKPGMTVHCRIMKIDIEKFNVD 1269
Query 720 LSMRPEGA---------------EAPAKTQRPPRREQQEQRGERKPQPKRPQAARSNDQA 764
L+ R + A+T + E+Q+++ +R KR A S
Sbjct 1270 LTCRTSDLSDKNNEWKLPKDTYYDFDAETDDVKQEEEQKKKQQRTTYIKRVIAHPSFHNI 1329
Query 765 KKPQRAKQEKPQEQKIGGLGALLLQAGIKG 794
Q K + +Q G ++++ KG
Sbjct 1330 NFKQAEKMMESMDQ-----GDVVIRPSSKG 1354
Score = 23.5 bits (49), Expect = 1.2
Identities = 19/49 (39%), Positives = 24/49 (49%), Gaps = 11/49 (22%)
Query 44 VPFIARYRKE-VTQGLD----------DTQLRQLDTRLSYLRDLYERRE 81
VPFIA YRKE V L+ D + QL TR L L++R +
Sbjct 361 VPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQRMQ 409
Score = 21.9 bits (45), Expect = 3.5
Identities = 9/23 (39%), Positives = 13/23 (57%), Gaps = 0/23 (0%)
Query 104 AETKNSLEEIYAPYRPKRTSKSF 126
AE +++ APYRP T + F
Sbjct 1119 AELSCRYKDLRAPYRPPNTEEVF 1141
>Q62383 Transcription elongation factor SPT6 [Mus musculus]
Length=1726
Score = 95.9 bits (237), Expect = 8e-23
Identities = 162/722 (22%), Positives = 279/722 (39%), Gaps = 148/722 (20%)
Query 146 EPTEALAGFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKTATLKSAVASDE 205
EP E + + E+ L+ ++++ A+ + L+ F + A L
Sbjct 565 EPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKG 624
Query 206 KKEVGKKFRDY-FEFSEN--LNKVPSHRLLAMLRGRQENVLGLKVD---------GEDDA 253
+K+V + Y F++ +N + ++ + L + E +L + + G D
Sbjct 625 RKDVDEAHYAYSFKYLKNKPVKELRDDQFLKIGLAEDEGLLTIDISIDMKGVEGYGNDQT 684
Query 254 PIARIETEYNLD----QVQPQARQDFL--KQTAKLFWLGKIRPQIEHSLLTEKRLAAEAE 307
I+ Y D QVQ RQ + ++ + F ++ ++++ LL E R
Sbjct 685 YFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAR----ES 740
Query 308 AMQVFAENLRHLLLSAPAGGRTTLGVDP---------GIRT-----------GVKLAVVS 347
++ + L + L AP + D GIR V A+V+
Sbjct 741 VVKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVN 800
Query 348 DAGDV-----LAHSTIYPFAPKEDKEGSIAELARLCREYNVD------LVAIGNGTASRE 396
G+V L H T A +E++ A+ +++ V+ +A N A
Sbjct 801 GEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLVNKKPHVVTIAGENRDAQML 860
Query 397 TEAVIADMMAANTDLNLTRVTVSEAG---ASVYSASELAAAELPELDVSIRGAVSIARRL 453
TE V + + L+ + V A +Y S+ + AE + +R AVS+ARR+
Sbjct 861 TEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRI 920
Query 454 QDPLAELVKI-----DPKSIGVGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTA---- 504
QDPL E ++ D + Q V + L L + VN VGVDVN A
Sbjct 921 QDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHP 980
Query 505 -SSAILGYIAGLNKAIAQQIVEYRKENG-RFDTRQSLKKVPRLGERTFEQAAGFLRIQNG 562
S A++ Y+ GL +++ K+N R ++R L + +G + F AGFL+I
Sbjct 981 YSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTA 1040
Query 563 S---------EPLDASAVHPESYSLVEKM-VEA-----------KATTVKDIIGNSEIIR 601
S E LD S VHPE+Y KM V+A A +++I+ N E ++
Sbjct 1041 SLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLK 1100
Query 602 QIKADDFVD--EKFGLP----TIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTEGM 655
+ D F + E+ G T+ D+ AEL +D R +R+ E + + T
Sbjct 1101 DLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPET 1160
Query 656 QLEG--VVTNVT--------------------------------NFGAFVDIGVHQD--- 678
G ++ NVT NF ++ H D
Sbjct 1161 FYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGS 1220
Query 679 -----------------GLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVNLS 721
G + L+++ V P + VK G V R++++D E+ +L+
Sbjct 1221 CPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLT 1280
Query 722 MR 723
R
Sbjct 1281 CR 1282
Score = 22.7 bits (47), Expect = 2.0
Identities = 16/49 (33%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query 44 VPFIARYRKEVTQG----LDDTQLRQLDTRLSYLRDLYERREKVIESLK 88
VPFIA YRKE + D ++ Q D + + LR E ++ E ++
Sbjct 373 VPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQ 421
>Q7KZ85 Transcription elongation factor SPT6 [Homo sapiens]
Length=1726
Score = 95.5 bits (236), Expect = 1e-22
Identities = 162/724 (22%), Positives = 281/724 (39%), Gaps = 152/724 (21%)
Query 146 EPTEALAGFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKTATLKSAVASDE 205
EP E + + E+ L+ ++++ A+ + L+ F + A L
Sbjct 565 EPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKG 624
Query 206 KKEVGKKFRDY-FEFSEN--LNKVPSHRLLAMLRGRQENVL---------GLKVDGEDDA 253
+K+V + Y F++ +N + ++ + L + E +L G++ G D
Sbjct 625 RKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQT 684
Query 254 PIARIETEYNLD----QVQPQARQDFL--KQTAKLFWLGKIRPQIEHSLLTEKRLAAEAE 307
I+ Y D QVQ RQ + ++ + F ++ ++++ LL E A+
Sbjct 685 YFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAE----AKEY 740
Query 308 AMQVFAENLRHLLLSAPAGGRTTLGVDP---------GIRT-----------GVKLAVVS 347
++ + L + L AP + D GIR V A+V+
Sbjct 741 VIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVN 800
Query 348 DAGDV-----LAH----STIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNGTASRETE 398
G+V L H T + +E K I L + +V + +R+ +
Sbjct 801 GEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAG--ENRDAQ 858
Query 399 AVIADMMAANTDLN----LTRVTVSEAG---ASVYSASELAAAELPELDVSIRGAVSIAR 451
+I D+ +L+ L+ + V A +Y S+ + AE + +R AVS+AR
Sbjct 859 MLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLAR 918
Query 452 RLQDPLAELVKI-----DPKSIGVGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTA-- 504
R+QDPL E ++ D + Q V + L L + VN VGVDVN A
Sbjct 919 RIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIA 978
Query 505 ---SSAILGYIAGLNKAIAQQIVEYRKENG-RFDTRQSLKKVPRLGERTFEQAAGFLRIQ 560
S A++ Y+ GL +++ K+N R ++R L + +G + F AGFL+I
Sbjct 979 HPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKID 1038
Query 561 NGS---------EPLDASAVHPESYSLVEKM-VEA-----------KATTVKDIIGNSEI 599
S E LD S VHPE+Y KM V+A A +++I+ N E
Sbjct 1039 TASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPER 1098
Query 600 IRQIKADDFVD--EKFGLP----TIQDVLAELEKPGRDPRPEFRTAKFREDITEIAQLTE 653
++ + D F + E+ G T+ D+ AEL +D R +R+ E + + T
Sbjct 1099 LKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETP 1158
Query 654 GMQLEG--VVTNVT--------------------------------NFGAFVDIGVHQD- 678
G ++ NVT NF ++ H D
Sbjct 1159 ETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDS 1218
Query 679 -------------------GLVHISELANEFVSDPHKVVKPGQIVQVRVIQVDAERKRVN 719
G + L+++ V P + VK G V R++++D E+ +
Sbjct 1219 GSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSAD 1278
Query 720 LSMR 723
L+ R
Sbjct 1279 LTCR 1282
Score = 22.7 bits (47), Expect = 2.0
Identities = 16/49 (33%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query 44 VPFIARYRKEVTQG----LDDTQLRQLDTRLSYLRDLYERREKVIESLK 88
VPFIA YRKE + D ++ Q D + + LR E ++ E ++
Sbjct 373 VPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQ 421
>Q9W420 Transcription elongation factor SPT6 [Drosophila melanogaster]
Length=1831
Score = 89.0 bits (219), Expect = 1e-20
Identities = 161/778 (21%), Positives = 287/778 (37%), Gaps = 157/778 (20%)
Query 139 QILNEQIEPTEALAGFSHEDYSDSESQLDAIQHIIIDDWAQNIALTTELKALFAKTA--- 195
+I E I PTE + + ++ + A ++++ AQ L ++ ++ A
Sbjct 563 EITQESIGPTELAKQYLSPRFMTTDEVIHAAKYVVARQLAQEPLLRKTMREVYFDRARIN 622
Query 196 ---TLKSAVASDEKKEVGKKFRDYFEFSENLNKVPSHRLLAMLRGRQENVLGLK------ 246
T V DE V + + + ++ + + + ++ +E +L +
Sbjct 623 IRPTKNGMVLIDENSPV---YSMKYVAKKPVSDLFGDQFIKLMMAEEEKLLEITFLEEFE 679
Query 247 ----VDGEDDAPIARIETEYNLDQVQPQARQDFLKQTAKLFWLGKIRPQIEHSLLTEKRL 302
+G + + Y LDQ Q++ K A+ L ++ + L+ E R
Sbjct 680 GNACANGTPGDYVEESKALYQLDQFAKHV-QEWNKLRAECVQLA-LQKWVIPDLIKELRS 737
Query 303 AAEAEAMQVFAEN----LRHLLLSAP----------------AGGRTTLGV--DPGIRTG 340
EA Q + L L AP G LG+ DP
Sbjct 738 TLHEEAQQFVLRSCTGKLYKWLKVAPYKPQLPPDFGYEEWSTLRGIRVLGLAYDPDHSVA 797
Query 341 VKLAVVSDAGDV---------LAHSTIYPFAPKEDKEGSIAELARLCREYNVDLVAIGNG 391
AV + GD+ L Y K K + +L+ + +V IG
Sbjct 798 AFCAVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKLSDFIKMKKPHIVVIG-- 855
Query 392 TASRETEAVIADMMAANTDLNLTRV-------TVSEAGASVYSASELAAAELPELDVSIR 444
SR+ + + AD+ +L + + A +Y+ S+ ++ E ++
Sbjct 856 AESRDAQNIQADIKEILHELETSEQFPPIEVEIIDNELAKIYANSKKGESDFKEYPPLLK 915
Query 445 GAVSIARRLQDPLAE---LVKIDPKSIGVGQY--QHDVNQTGLAKTLDAVVEDCVNAVGV 499
A S+AR++QDPL E L D + + + + Q V + L + L + + VG+
Sbjct 916 QAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLLEQLSLQFINRTSEVGL 975
Query 500 DV-----NTASSAILGYIAGLNKAIAQQIVEYRKE-NGRFDTRQSLKKVPRLGERTFEQA 553
D+ N+ + +L YI GL Q +++ K+ N R + R L V LG R F
Sbjct 976 DINLMVQNSRTINLLQYICGLGPRKGQALLKLLKQSNQRLENRTQLVTVCHLGPRVFINC 1035
Query 554 AGFLRIQNGS---------EPLDASAVHPESYSLVEKM-VEA---------KATTVKDII 594
+GF++I S E LD S VHPE+Y KM ++A A +++I+
Sbjct 1036 SGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMAIDAMEYDDEETNPAGALEEIL 1095
Query 595 GNSEIIRQIKADDFVDE----KFGLP--TIQDVLAELEKPGRDPRPEFRTAKFREDITEI 648
+ E ++ + D F E FG T+ D+ EL +D R + E +
Sbjct 1096 ESPERLKDLDLDAFAVELERQGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEELFDML 1155
Query 649 AQLTE-----GMQLEGVVTNVT-------------------------------NFGAFVD 672
+ T G + +VT T +F +
Sbjct 1156 TKETPDSFYVGKCVTAMVTGFTYRRPQGDQLDSANPVRLDSNESWQCPFCHKDDFPELSE 1215
Query 673 IGVHQD--------------------GLVHISELANEFVSDPHKVVKPGQIVQVRVIQVD 712
+ H D G +HI L++ V +P + V+ Q++ VR+I++D
Sbjct 1216 VWNHFDANACPGQPSGVRVRLENGLPGFIHIKNLSDRQVRNPEERVRVSQMIHVRIIKID 1275
Query 713 AERKRVNLSMRPEGAEAPAKTQRPPRREQ----QEQRGERKPQPKRPQAARSNDQAKK 766
+R V S R + RP R E++ RK + +A + A++
Sbjct 1276 IDRFSVECSSRTADLKDVNNEWRPRRDNYYDYVTEEQDNRKVSDAKARALKRKIYARR 1333
Score = 25.8 bits (55), Expect = 0.23
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query 136 IAEQILNEQIEPTEALAGFSH---EDYSDSESQLDAIQHIIIDDWAQNIA 182
IAEQ+ +E E + SH +DY D +++ DA I+DD + IA
Sbjct 140 IAEQLFDENDESIGHRSERSHREADDYDDVDTESDA-DDFIVDDNGRPIA 188
Score = 23.1 bits (48), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (4%)
Query 29 NQVEAAIRLI-DEGASVPFIARYRKE 53
N+++ + I ++ VPFIA YRKE
Sbjct 347 NKIKQTLEFIRNQQLEVPFIAFYRKE 372
>P34703 Suppressor of Ty 6 homolog [Caenorhabditis elegans]
Length=1521
Score = 86.7 bits (213), Expect = 5e-20
Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 40/310 (13%)
Query 395 RETEAVIADMMAANTDLNLTRVTVSE-AGASVYSASELAAAELPELDVSIRGAVSIARRL 453
R+ E +AD+ + N V + + A VY S ++ AE P+ ++R A+S+AR L
Sbjct 830 RDLEEAVADLFSQNLIYKPIPVFLMDNEAAKVYMRSNVSLAENPDHPPTLRQALSLARLL 889
Query 454 QDPLAELVKI-----DPKSIGVGQYQHDVNQTGLAKTLDAVVEDCVNAVGVDVNTAS--- 505
DP+ E + D + + Q D++Q LA L + + VN GVD+N +
Sbjct 890 LDPIPEYAHLWNIDEDIFCLSLHPLQRDIDQEQLALVLSHELVNKVNEEGVDINKCAEFP 949
Query 506 --SAILGYIAGLNKAIAQQIVEYRKENGR-FDTRQSLKKVPRLGERTFEQAAGFLRIQNG 562
+ +L + GL A +++ K N ++R L +LG + F AGF++I
Sbjct 950 HYTNMLQFTCGLGPRKATDLLKSIKANDNLIESRSKLVVGCKLGPKVFMNCAGFIKIDTI 1009
Query 563 S---------EPLDASAVHPESYSLVEKM-VEA--------KATTVKDIIGNSEIIRQIK 604
E LD S VHPE+Y KM V+A +++I+ + + +R +
Sbjct 1010 KVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDDSADPTAALQEIMESPDRLRDLD 1069
Query 605 ADDFVDE----KFG--LPTIQDVLAELEKPGRDPRPEFR--TAKFREDITEIA--QLTEG 654
D F DE FG T+ D+ +EL +D R F+ T + D+ + ++ EG
Sbjct 1070 LDAFADELSRQGFGEKKSTLYDISSELSARYKDLRQPFQEPTGELLYDLLARSGKEIREG 1129
Query 655 MQLEGVVTNV 664
++ G V +V
Sbjct 1130 AKVLGTVQSV 1139
Score = 26.9 bits (58), Expect = 0.10
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query 35 IRLIDEGASVPFIARYRKEVTQGL----DDTQLRQLDTRLSYLRDLYERREKVIESLKEQ 90
IR+ FI YRKE L + ++ D + +L + + ++ ++E
Sbjct 358 IRVRSNSFEPTFIGFYRKEDIDNLLTMNNLWRVYDFDEKWCHLSEKKNKIYDLMRRMREY 417
Query 91 NKLSDDLLAR-----------VNAAETKNSLEEIYAPYR 118
+LSDDL A+ AET L +I+A ++
Sbjct 418 QELSDDLTAKRRPISDADLMDTKYAETLEQLTDIHANFQ 456
>A8J637 Polyprotein of EF-Ts, chloroplastic [Chlamydomonas reinhardtii]
Length=1013
Score = 80.9 bits (198), Expect = 3e-18
Identities = 42/87 (48%), Positives = 60/87 (69%), Gaps = 1/87 (1%)
Query 647 EIAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct 57 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116
Query 707 RVIQVDAERKRVNLSMRPE-GAEAPAK 732
+V+ VDAE+KRV+L ++ AEA A+
Sbjct 117 KVLSVDAEKKRVSLELKSAVAAEASAE 143
>Q8CWR9 Small ribosomal subunit protein bS1 [Streptococcus pneumoniae
(strain ATCC BAA-255 / R6)]
Length=400
Score = 79.0 bits (193), Expect = 3e-18
Identities = 41/113 (36%), Positives = 75/113 (66%), Gaps = 8/113 (7%)
Query 650 QLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVI 709
+L +G +EG V +T+FGAFV++ DGLVH+S+++++ + +P + +K GQ VQV+V+
Sbjct 275 KLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVL 334
Query 710 QVDAERKRVNLSMRPEGAEAPAKTQRPPRREQQEQRGERKPQPKRPQAARSND 762
+V+A+ +RV+LS++ A +RP + E Q++ +R +P+RP+ D
Sbjct 335 EVNADAERVSLSIK-------ALEERPAQEEGQKEE-KRAARPRRPRRQEKRD 379
Score = 60.5 bits (145), Expect = 3e-12
Identities = 33/89 (37%), Positives = 56/89 (63%), Gaps = 3/89 (3%)
Query 635 EFRTAKFREDITEIAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDP 694
E TA R ++ +L G + G V +T+FGAF+D+G DGLVH++EL++E P
Sbjct 177 EAATAAARAEV--FGKLAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSP 233
Query 695 HKVVKPGQIVQVRVIQVDAERKRVNLSMR 723
VV G+ ++V+++ ++ E RV+LS++
Sbjct 234 KSVVTVGEEIEVKILDLNEEEGRVSLSLK 262
Lambda K H a alpha
0.315 0.132 0.359 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 13546573
Database: 1c03f57c253d25d2f99445246f7638a3.SwissProt.fasta
Posted date: Jun 2, 2024 5:30 AM
Number of letters in database: 19,633
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
