BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9aa166cadb5aa7f88092da87a4316857.SwissProt.fasta
           3 sequences; 904 total letters



Query= ACIAD3359

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

G3XD30 Type IV pilus inner membrane component PilN [Pseudomonas a...  121     9e-39
P34027 Type II secretion system protein L [Xanthomonas campestris...  49.3    3e-11
Q9FX84 Transcription factor HHO6 [Arabidopsis thaliana]               35.4    1e-06


>G3XD30 Type IV pilus inner membrane component PilN [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / 
JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=198

 Score = 121 bits (304),  Expect = 9e-39
 Identities = 64/160 (40%), Positives = 92/160 (58%), Gaps = 0/160 (0%)

Query  1    MTKINLLPWRDKLREKRKKEFLVFSILVGLLGCAAVLMGWFYFGHKLNDQEQANQLILTT  60
            M +INLLPWR++LRE+RK++FLV    V +   A V +G  YF   + +Q   N  +   
Sbjct  1    MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKE  60

Query  61   NQGLDQQLKSLDGLQQQRNAIVERMKLIQGLQAQRPVTVRLIDELVRVTPSNMYLTKFTR  120
               LD ++K +  L+ +R  ++ERMK+IQ LQ  RP+  R+ D+LVR  P  +Y T    
Sbjct  61   IVVLDARIKEISELKSRRQQLLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKM  120

Query  121  TGDKFTIEGKAESPNTVAELLRNLEASAWYRNAFMNSFLA  160
            TG    I G AES N V+ L+RN++AS W     +N   A
Sbjct  121  TGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA  160


>P34027 Type II secretion system protein L [Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 
/ LMG 568 / P 25)]
Length=373

 Score = 49.3 bits (116),  Expect = 3e-11
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (5%)

Query  4    INLLPWRDKLREKRKKEFLVFSILVGLLGCAAVLMGWFYFGHKLNDQEQANQLILTTNQG  63
            +NLLP   +LR     +     + V  L   AV  GW      L+++ QA   +    Q 
Sbjct  195  VNLLPPARRLRRSDPMQRWNLLLAVAALVLLAVA-GWLL----LDNRRQAADDLRAQVQA  249

Query  64   LDQQLKSLDGLQQQRNAIVERMKLIQGLQAQRPVTVRLIDELVRVTPSNMYLTKFTRTGD  123
               + + +   +QQ   +VE     Q  +A RP +V + DEL R  PS  YL KF+  G 
Sbjct  250  NAGRARQVAAERQQLLELVEGAAFFQEQRATRPTSVEIWDELSRRLPSGTYLEKFSVEGG  309

Query  124  KFTIEGKAESPNTVAELLRNLEASAWYRNAFMNSFLAAEDNKD  166
            +  + G ++     + L+R LE S  +    +   L ++  ++
Sbjct  310  QLQLIGLSKE---ASSLVRRLEGSPLWHTPSLTGVLQSDAGRN  349


>Q9FX84 Transcription factor HHO6 [Arabidopsis thaliana]
Length=333

 Score = 35.4 bits (80),  Expect = 1e-06
 Identities = 30/163 (18%), Positives = 71/163 (44%), Gaps = 14/163 (9%)

Query  62   QGLDQQLKSLDGLQQQRNAIVERMKLIQGLQAQRPVTVRLIDELVRVTPSNMYLTKFTRT  121
            +G+   + +++ + +    + E  + ++  Q + P++++++++ +            T+ 
Sbjct  16   RGVSMNVVAVEKVDEHVKKLEEEKRKLESCQLELPLSLQILNDAILYLKDKRCSEMETQP  75

Query  122  --GDKFTIEGKAESPNTVA-----ELLRNLEASAWYRN----AFMNSFLAAEDNKDKTPS  170
               D  ++    +    +      EL+R  +   W  N    + + S L  + N++K+P 
Sbjct  76   LLKDFISVNKPIQGERGIELLKREELMREKKFQQWKANDDHTSKIKSKLEIKRNEEKSPM  135

Query  171  SVVPRVEAGYGSFLVSVDLGELGTSLA---TSDQPQTPPTAGV  210
             ++P+VE G G  L S  +   G   +   TS+    PPT  V
Sbjct  136  LLIPKVETGLGLGLSSSSIRRKGIVASCGFTSNSMPQPPTPAV  178



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147602


  Database: 9aa166cadb5aa7f88092da87a4316857.SwissProt.fasta
    Posted date:  May 10, 2024  5:59 PM
  Number of letters in database: 904
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40