BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 0427699397ba3258dd1c9080f01de7fc.SwissProt.fasta
           1 sequences; 1,111 total letters



Query= ACIAD3344

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q57362 Uncharacterized MscS family protein HI_0195.1 [Haemophilus...  33.9    5e-06


>Q57362 Uncharacterized MscS family protein HI_0195.1 [Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=1111

 Score = 33.9 bits (76),  Expect = 5e-06
 Identities = 30/115 (26%), Positives = 55/115 (48%), Gaps = 8/115 (7%)

Query  72   IPCSQAYHQNTRRRAEQLFAELGVWDTQYNSGILLYLNLCEKKVELVVDRGICTESHTQA  131
            I    +Y+QN  +  +QL     ++ ++YN   LL L L  ++  ++  + +  + + Q 
Sbjct  201  IDLKNSYNQNLLKNNDQLSL---LYQSRYN---LLNLRLQVQQQNIIAIQEVINQKNLQQ  254

Query  132  WQMICEQ--MIQKLKQDQYREAVVNAVTEIGQVLDQFYDGCNQNDQDELDNQPII  184
             Q   EQ    QK  Q+ Y +  ++   ++GQ L Q  +  N   QDEL  + I+
Sbjct  255  SQNQVEQAQQQQKTVQNDYIQKELDRNAQLGQYLLQQTEKANSLTQDELRMRNIL  309


 Score = 22.7 bits (47),  Expect = 0.019
 Identities = 12/47 (26%), Positives = 21/47 (45%), Gaps = 0/47 (0%)

Query  115  VELVVDRGICTESHTQAWQMICEQMIQKLKQDQYREAVVNAVTEIGQ  161
            V   + RGI   S   A + + E+  QK  ++ Y     + V  +G+
Sbjct  730  VRNTIYRGITVSSRRLAHRRLAEKRRQKALENNYENISSDDVVAVGE  776


 Score = 16.2 bits (30),  Expect = 2.3
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 0/29 (0%)

Query  158  EIGQVLDQFYDGCNQNDQDELDNQPIILN  186
            +I Q+ DQ      Q       N PI L+
Sbjct  433  QITQISDQIQSKLEQQSFWVKSNNPINLD  461



Lambda      K        H        a         alpha
   0.323    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167245


  Database: 0427699397ba3258dd1c9080f01de7fc.SwissProt.fasta
    Posted date:  May 12, 2024  8:20 AM
  Number of letters in database: 1,111
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40