Comparative Genomics

ACIAD3325 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 566796b7ecf3a2e2969654e3838a7cce.TrEMBL.fasta
           29 sequences; 2,706 total letters



Query= ACIAD3325

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7G2SBD7 DNA-directed RNA polymerase subunit omega [Acinetobact...  185     1e-66
A0A6G8RYV7 DNA-directed RNA polymerase subunit omega [Acinetobact...  182     1e-65
A0A1P8EK81 DNA-directed RNA polymerase subunit omega [Acinetobact...  182     2e-65
N9C090 DNA-directed RNA polymerase subunit omega [Acinetobacter s...  182     2e-65
A0A0M1I8I6 DNA-directed RNA polymerase subunit omega [Acinetobact...  182     2e-65
N9C403 DNA-directed RNA polymerase subunit omega [Acinetobacter u...  181     3e-65
A0A3D2SP76 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     3e-65
A0A3A8E9R5 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     3e-65
A0A427PSY0 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     3e-65
A0A6G8S790 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     5e-65
A0A1Y3D3L4 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     7e-65
A0A1Y3CJ55 DNA-directed RNA polymerase subunit omega [Acinetobact...  181     7e-65
N8Y665 DNA-directed RNA polymerase subunit omega [Acinetobacter g...  180     9e-65
A0A2L2LZ81 DNA-directed RNA polymerase subunit omega [Acinetobact...  180     1e-64
N9CFM3 DNA-directed RNA polymerase subunit omega [Acinetobacter t...  180     1e-64
A0A1H7RZ77 DNA-directed RNA polymerase subunit omega [Acinetobact...  180     1e-64
A0A2C9WUP2 DNA-directed RNA polymerase subunit omega [Acinetobact...  180     1e-64
A0A4R0DBE1 DNA-directed RNA polymerase subunit omega [Acinetobact...  180     1e-64
A0A385C118 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     2e-64
A0A0Q7F6A9 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     2e-64
A0A3A8ETY2 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     2e-64
A0A077KSU4 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     2e-64
L9MSF1 DNA-directed RNA polymerase subunit omega [Acinetobacter s...  179     2e-64
A0A4R0FAF6 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     4e-64
A0A062C455 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     4e-64
A0A2T1J216 DNA-directed RNA polymerase subunit omega [Acinetobact...  179     4e-64
Q1EPP8 DNA-directed RNA polymerase subunit omega [Pseudomonas sp....  97.1    1e-31
Q462J4 DNA-directed RNA polymerase subunit omega [Rhizobium etli]     75.5    1e-22
A0A8B6X5W1 DNA-directed RNA polymerase subunit omega [Derxia gumm...  70.5    2e-21


>A0A7G2SBD7 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp]
Length=93

 Score = 185 bits (469),  Expect = 1e-66
 Identities = 93/93 (100%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A6G8RYV7 DNA-directed RNA polymerase subunit omega [Acinetobacter 
shaoyimingii]
Length=93

 Score = 182 bits (463),  Expect = 1e-65
 Identities = 91/93 (98%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLDGFSFQ  93


>A0A1P8EK81 DNA-directed RNA polymerase subunit omega [Acinetobacter 
soli]
Length=93

 Score = 182 bits (462),  Expect = 2e-65
 Identities = 91/93 (98%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQR+QDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQREQDYQTSSLDLALSANSLNLEGFSFQ  93


>N9C090 DNA-directed RNA polymerase subunit omega [Acinetobacter 
soli NIPH 2899]
Length=93

 Score = 182 bits (462),  Expect = 2e-65
 Identities = 91/93 (98%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQR+QDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQREQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A0M1I8I6 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. C15]
Length=93

 Score = 182 bits (462),  Expect = 2e-65
 Identities = 91/93 (98%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQR+QDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQREQDYQTSSLDLALSANSLNLEGFSFQ  93


>N9C403 DNA-directed RNA polymerase subunit omega [Acinetobacter 
ursingii ANC 3649]
Length=93

 Score = 181 bits (460),  Expect = 3e-65
 Identities = 91/93 (98%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A3D2SP76 DNA-directed RNA polymerase subunit omega [Acinetobacter 
ursingii]
Length=93

 Score = 181 bits (460),  Expect = 3e-65
 Identities = 91/93 (98%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A3A8E9R5 DNA-directed RNA polymerase subunit omega [Acinetobacter 
guerrae]
Length=93

 Score = 181 bits (460),  Expect = 3e-65
 Identities = 91/93 (98%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIATGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A427PSY0 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. FDAARGOS_515]
Length=93

 Score = 181 bits (460),  Expect = 3e-65
 Identities = 91/93 (98%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93


>A0A6G8S790 DNA-directed RNA polymerase subunit omega [Acinetobacter 
lanii]
Length=93

 Score = 181 bits (459),  Expect = 5e-65
 Identities = 90/93 (97%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLDGFSFQ  93


>A0A1Y3D3L4 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. ANC 4648]
Length=93

 Score = 181 bits (458),  Expect = 7e-65
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIASGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLDGFSFQ  93


>A0A1Y3CJ55 DNA-directed RNA polymerase subunit omega [Acinetobacter 
silvestris]
Length=93

 Score = 181 bits (458),  Expect = 7e-65
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIASGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSANSLNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANSLNLDGFSFQ  93


>N8Y665 DNA-directed RNA polymerase subunit omega [Acinetobacter 
gerneri DSM 14967 = CIP 107464 = MTCC 9824]
Length=93

 Score = 180 bits (457),  Expect = 9e-65
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A2L2LZ81 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. SWBY1]
Length=93

 Score = 180 bits (456),  Expect = 1e-64
 Identities = 89/93 (96%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLDGFSFQ  93


>N9CFM3 DNA-directed RNA polymerase subunit omega [Acinetobacter 
towneri DSM 14962 = CIP 107472]
Length=93

 Score = 180 bits (456),  Expect = 1e-64
 Identities = 89/93 (96%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLDGFSFQ  93


>A0A1H7RZ77 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. DSM 11652]
Length=93

 Score = 180 bits (456),  Expect = 1e-64
 Identities = 89/93 (96%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQR+QDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQREQDYQTSSLDLALSANNLNLDGFSFQ  93


>A0A2C9WUP2 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. ANC 3813]
Length=93

 Score = 180 bits (456),  Expect = 1e-64
 Identities = 89/93 (96%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLDGFSFQ  93


>A0A4R0DBE1 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. ANC 5045]
Length=93

 Score = 180 bits (456),  Expect = 1e-64
 Identities = 89/93 (96%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIAEGHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAEGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLDGFSFQ  93


>A0A385C118 DNA-directed RNA polymerase subunit omega [Acinetobacter 
wuhouensis]
Length=93

 Score = 179 bits (455),  Expect = 2e-64
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A0Q7F6A9 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. Root1280]
Length=93

 Score = 179 bits (455),  Expect = 2e-64
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A3A8ETY2 DNA-directed RNA polymerase subunit omega [Acinetobacter 
rongchengensis]
Length=93

 Score = 179 bits (455),  Expect = 2e-64
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A077KSU4 DNA-directed RNA polymerase subunit omega [Acinetobacter 
guillouiae]
Length=93

 Score = 179 bits (455),  Expect = 2e-64
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>L9MSF1 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. WC-743]
Length=93

 Score = 179 bits (455),  Expect = 2e-64
 Identities = 90/93 (97%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHVT
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A4R0FAF6 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. ANC 3781]
Length=93

 Score = 179 bits (453),  Expect = 4e-64
 Identities = 89/93 (96%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIA GHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAAGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNL+GFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLDGFSFQ  93


>A0A062C455 DNA-directed RNA polymerase subunit omega [Acinetobacter 
sp. 263903-1]
Length=93

 Score = 179 bits (453),  Expect = 4e-64
 Identities = 89/93 (96%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>A0A2T1J216 DNA-directed RNA polymerase subunit omega [Acinetobacter 
radioresistens]
Length=93

 Score = 179 bits (453),  Expect = 4e-64
 Identities = 89/93 (96%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVV+LREIA GHV+
Sbjct  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVS  60

Query  61  KDILKQRDQDYQTSSLDLALSANSLNLEGFSFQ  93
           KDILKQRDQDYQTSSLDLALSAN+LNLEGFSFQ
Sbjct  61  KDILKQRDQDYQTSSLDLALSANNLNLEGFSFQ  93


>Q1EPP8 DNA-directed RNA polymerase subunit omega [Pseudomonas 
sp. MIS38]
Length=87

 Score = 97.1 bits (240),  Expect = 1e-31
 Identities = 44/68 (65%), Positives = 60/68 (88%), Gaps = 0/68 (0%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDCL+HV+NRFELV++++KRARQLA  G EP V+W+NDKPTVV+LREIAEG ++
Sbjct  1   MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS  60

Query  61  KDILKQRD  68
            + + +++
Sbjct  61  YEFIAEQE  68


>Q462J4 DNA-directed RNA polymerase subunit omega [Rhizobium etli]
Length=134

 Score = 75.5 bits (184),  Expect = 1e-22
 Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (2%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MARVTVEDC+D V+NRFELVL+AS RAR L  QG   T++ DNDK  VV+LREIA+  ++
Sbjct  1   MARVTVEDCIDKVENRFELVLLASHRAR-LISQGASITIDRDNDKNPVVALREIADETLS  59

Query  61  KDILKQ  66
            D LK+
Sbjct  60  PDDLKE  65


>A0A8B6X5W1 DNA-directed RNA polymerase subunit omega [Derxia 
gummosa DSM 723]
Length=67

 Score = 70.5 bits (171),  Expect = 2e-21
 Identities = 40/66 (61%), Positives = 48/66 (73%), Gaps = 2/66 (3%)

Query  1   MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT  60
           MAR+TVEDCL  + NRF+L L A+ RARQLA QG  P VE   DKPTV +LREIA G V 
Sbjct  1   MARITVEDCLKQIPNRFQLALAATYRARQLA-QGHTPKVE-TKDKPTVTALREIAAGKVG  58

Query  61  KDILKQ  66
            ++LK+
Sbjct  59  IEMLKK  64



Lambda      K        H        a         alpha
   0.323    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117504


  Database: 566796b7ecf3a2e2969654e3838a7cce.TrEMBL.fasta
    Posted date:  Jun 3, 2024  3:19 PM
  Number of letters in database: 2,706
  Number of sequences in database:  29



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40