BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c011434d4f69d5a34198110f17ab5295.TrEMBL.fasta
19 sequences; 3,039 total letters
Query= ACIAD3321
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
Q9RBI9 Type II secretion system protein H [Acinetobacter baylyi (... 284 4e-104
A0A7G2SAS9 Type II secretion system protein H [Acinetobacter sp] 280 1e-102
A0A1P8EKA0 Type II secretion system protein H [Acinetobacter soli] 217 1e-77
A0A3R9AQG2 Type II secretion system protein H [Acinetobacter soli] 215 8e-77
A0A0M1I869 Pilus assembly protein [Acinetobacter sp. C15] 213 4e-76
N9C0R1 Type II secretion system protein H [Acinetobacter soli NIP... 206 4e-73
A0A4V2DBD5 Type II secretion system protein H [Acinetobacter halo... 151 1e-50
D4XU57 Prepilin-type cleavage/methylation N-terminal domain prote... 149 2e-50
A0A6A8BDH8 Prepilin-type N-terminal cleavage/methylation domain-c... 150 2e-50
A0A3L9MBG9 Type II secretion system protein H [Acinetobacter sp. ... 149 2e-50
Q7WZP3 Type II secretion system protein H [Pseudomonas aeruginosa] 61.2 4e-16
A0A8B6XCK9 Type II secretion system protein H [Derxia gummosa DSM... 61.2 7e-16
Q59652 Type II secretion system protein H [Pseudomonas aeruginosa] 57.4 1e-14
E9KTN0 Type II secretion system protein H [Pseudomonas aeruginosa] 57.0 2e-14
O52613 Fimbrillin [Xanthomonas citri] 53.5 2e-13
F7IY52 Type II secretion system protein H [Pseudomonas amygdali p... 53.5 3e-13
F7IY49 Pilin [Pseudomonas amygdali pv. tabaci] 52.8 3e-13
D8X0D1 PilE [Thermoanaerobacterium saccharolyticum] 52.4 5e-13
Q9APK5 FimA [Xanthomonas hyacinthi] 52.0 9e-13
>Q9RBI9 Type II secretion system protein H [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=148
Score = 284 bits (727), Expect = 4e-104
Identities = 148/148 (100%), Positives = 148/148 (100%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL
Sbjct 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK
Sbjct 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
FTLTRNGQSRCVEVGITGDTYYKEGACT
Sbjct 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
>A0A7G2SAS9 Type II secretion system protein H [Acinetobacter
sp]
Length=148
Score = 280 bits (717), Expect = 1e-102
Identities = 146/148 (99%), Positives = 147/148 (99%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
MTKMNGF LIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL
Sbjct 1 MTKMNGFPLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPI+TAK
Sbjct 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPISTAK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
FTLTRNGQSRCVEVGITGDTYYKEGACT
Sbjct 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
>A0A1P8EKA0 Type II secretion system protein H [Acinetobacter
soli]
Length=148
Score = 217 bits (553), Expect = 1e-77
Identities = 104/148 (70%), Positives = 130/148 (88%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M KM GFTLIEL++TI V+AILATIAVPSFNS+LN QKLNAS RELMSK+ EARTQA+T+
Sbjct 1 MQKMKGFTLIELIITITVLAILATIAVPSFNSLLNRQKLNASARELMSKLVEARTQALTI 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVC+STV++CA +LSI++N +NR++IAQL+K V +GSATQ+ FRVEGIP+ ++K
Sbjct 61 RQTTGVCVSTVTNCAESLSISSNISNRIFIAQLDKEVTLASGSATQLIFRVEGIPVASSK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
F+L R G +RC+EVG+TGDT YKEGACT
Sbjct 121 FSLQRQGIARCIEVGVTGDTTYKEGACT 148
>A0A3R9AQG2 Type II secretion system protein H [Acinetobacter
soli]
Length=148
Score = 215 bits (548), Expect = 8e-77
Identities = 103/148 (70%), Positives = 129/148 (87%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M KM GFTLIEL++TI V+AILATIAVPSFNS+LN QKLNAS RELMSK+ EARTQA+T+
Sbjct 1 MQKMKGFTLIELIITITVLAILATIAVPSFNSLLNRQKLNASARELMSKLVEARTQALTI 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVC+STV++CA +LSI++N + R++IAQL+K V +GSATQ+ FRVEGIP+ ++K
Sbjct 61 RQTTGVCVSTVTNCAESLSISSNISKRIFIAQLDKEVTLASGSATQLIFRVEGIPVASSK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
F+L R G +RC+EVG+TGDT YKEGACT
Sbjct 121 FSLQRQGVARCIEVGVTGDTTYKEGACT 148
>A0A0M1I869 Pilus assembly protein [Acinetobacter sp. C15]
Length=148
Score = 213 bits (543), Expect = 4e-76
Identities = 102/148 (69%), Positives = 128/148 (86%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M KM GFTLIEL++TI V+AILATIAVPSFNS+LN QKLNAS RELMSK+ EARTQA+T+
Sbjct 1 MQKMKGFTLIELIITITVLAILATIAVPSFNSLLNRQKLNASARELMSKLVEARTQALTI 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVC+STV++CA LSI++N +NR+++AQL+K V +GSA Q+ FRVEGIP+ ++K
Sbjct 61 RQTTGVCVSTVTNCAENLSISSNISNRIFVAQLDKEVTLASGSAIQLIFRVEGIPVASSK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
F+L R G +RC+EVG+TGDT YKEGACT
Sbjct 121 FSLQRQGIARCIEVGVTGDTTYKEGACT 148
>N9C0R1 Type II secretion system protein H [Acinetobacter soli
NIPH 2899]
Length=148
Score = 206 bits (524), Expect = 4e-73
Identities = 99/148 (67%), Positives = 123/148 (83%), Gaps = 0/148 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M KM GFTLIEL++TI V+AILATIAVPSFNS+LN QKLNAS RELMSK+ EARTQA+T+
Sbjct 1 MQKMKGFTLIELIITITVLAILATIAVPSFNSLLNRQKLNASARELMSKLVEARTQALTI 60
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
RQTTGVC+STV++C I+ NR+++AQL+K V +GSATQ+ FRVEGIP+ ++K
Sbjct 61 RQTTGVCVSTVTNCEKNPPISNIDKNRIFVAQLDKEVTLASGSATQLIFRVEGIPVASSK 120
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
F+L R G +RC+EVG+TGDT YKEGACT
Sbjct 121 FSLQRQGVARCIEVGVTGDTTYKEGACT 148
>A0A4V2DBD5 Type II secretion system protein H [Acinetobacter
halotolerans]
Length=224
Score = 151 bits (382), Expect = 1e-50
Identities = 78/146 (53%), Positives = 102/146 (70%), Gaps = 2/146 (1%)
Query 5 NGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTT 64
+GFTL EL+VTI +IAILA +A PSF SI + QKL +S RE+ K++EAR QAV LR++T
Sbjct 79 SGFTLFELIVTITIIAILAVMAAPSFASIYSRQKLESSAREVAMKVSEARAQAVMLREST 138
Query 65 GVCLSTVSD--CASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFT 122
GVCLS++S+ C++AL+IT NR+++A L+K V + S T + FR G F
Sbjct 139 GVCLSSLSETNCSTALTITDTNKNRIFVAHLDKGVTVDSRSETYLKFRNNGSVAAATNFI 198
Query 123 LTRNGQSRCVEVGITGDTYYKEGACT 148
L RNG S C+ VGITGDT KEGACT
Sbjct 199 LLRNGFSYCIAVGITGDTTIKEGACT 224
>D4XU57 Prepilin-type cleavage/methylation N-terminal domain protein
[Acinetobacter haemolyticus ATCC 19194]
Length=160
Score = 149 bits (376), Expect = 2e-50
Identities = 76/146 (52%), Positives = 102/146 (70%), Gaps = 2/146 (1%)
Query 5 NGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTT 64
+GFTL EL+VTI++IAI+A +A PSF S+ + QKL +S RE+ KI+EAR QAVTLR TT
Sbjct 15 SGFTLFELIVTISIIAIIAVMAAPSFASMYSKQKLESSAREIAIKISEARAQAVTLRSTT 74
Query 65 GVCLSTVSD--CASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFT 122
G+CLS++S+ C +AL IT N+V++A LEK + + S T + FR G + F
Sbjct 75 GMCLSSLSEASCITALGITDPNKNKVFVAHLEKGITVDSRSETHLIFRNNGSIAAASNFI 134
Query 123 LTRNGQSRCVEVGITGDTYYKEGACT 148
L RNG S C+ VG+TGDT +EGACT
Sbjct 135 LLRNGLSYCIAVGLTGDTRIREGACT 160
>A0A6A8BDH8 Prepilin-type N-terminal cleavage/methylation domain-containing
protein [Acinetobacter haemolyticus]
Length=198
Score = 150 bits (379), Expect = 2e-50
Identities = 77/146 (53%), Positives = 102/146 (70%), Gaps = 2/146 (1%)
Query 5 NGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTT 64
+GFTL EL+VTIA+IAI+A +A PSF S+ + QKL +S RE+ KI+EAR QAVTLR TT
Sbjct 53 SGFTLFELIVTIAIIAIIAVMAAPSFASMYSKQKLESSAREIAIKISEARAQAVTLRSTT 112
Query 65 GVCLSTVSD--CASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFT 122
G+CLS++S+ C +AL IT N+V++A LEK + + S T + FR G + F
Sbjct 113 GMCLSSLSEASCITALGITDPNKNKVFVAHLEKGITVDSRSETHLIFRNNGSIAAASNFI 172
Query 123 LTRNGQSRCVEVGITGDTYYKEGACT 148
L RNG S C+ VG+TGDT +EGACT
Sbjct 173 LLRNGLSYCIAVGLTGDTRIREGACT 198
>A0A3L9MBG9 Type II secretion system protein H [Acinetobacter
sp. 2JN-4]
Length=159
Score = 149 bits (375), Expect = 2e-50
Identities = 75/148 (51%), Positives = 103/148 (70%), Gaps = 2/148 (1%)
Query 3 KMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQ 62
+++GFTL EL+VTI +I ILA +A PSF S+ + QKL +S R++ K++EAR QAV LR+
Sbjct 12 RVSGFTLFELIVTITIIVILAVMAAPSFASMYSRQKLESSARDVAMKVSEARAQAVMLRE 71
Query 63 TTGVCLSTVSD--CASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
+TGVCLS++S+ C++AL+IT NR++++ LEK V + S T + FR G
Sbjct 72 STGVCLSSLSEANCSTALTITDTNKNRIFVSHLEKGVTVDSRSETYLKFRNNGSVAAATN 131
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGACT 148
F L RNG S C+ VGITGDT KEGACT
Sbjct 132 FILLRNGFSYCIAVGITGDTTIKEGACT 159
>Q7WZP3 Type II secretion system protein H [Pseudomonas aeruginosa]
Length=162
Score = 61.2 bits (147), Expect = 4e-16
Identities = 35/134 (26%), Positives = 68/134 (51%), Gaps = 8/134 (6%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GF+LIEL++ + ++AI A+IAVPSFN+++ ++ ++ EL S + AR++AV
Sbjct 9 GFSLIELMMVLVLVAIFASIAVPSFNALIERNRIQTASEELYSLLQYARSEAVNRHANVS 68
Query 66 VCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFTLTR 125
+ + +D A L I + T ++ ++ + + ++ F G TL+
Sbjct 69 IRATQNNDWAKGLEIISGATTVQKHQGFQQVSLSASSATAELTFNATG--------TLSN 120
Query 126 NGQSRCVEVGITGD 139
+ ++V GD
Sbjct 121 QAANIDIKVCFAGD 134
>A0A8B6XCK9 Type II secretion system protein H [Derxia gummosa
DSM 723]
Length=195
Score = 61.2 bits (147), Expect = 7e-16
Identities = 31/78 (40%), Positives = 45/78 (58%), Gaps = 4/78 (5%)
Query 3 KMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQ 62
+M GFTLIELL +A+ AILA IA P + + ++ + +L+S +A AR QA+ R
Sbjct 7 RMRGFTLIELLAVVAITAILAAIAAPPMSQFITRNRIASQANDLLSLLASARMQAIRERT 66
Query 63 TTGVCLST----VSDCAS 76
GVC + +DC S
Sbjct 67 PVGVCATNDPKGSADCVS 84
Score = 16.2 bits (30), Expect = 4.2
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 23 ATIAVPSFNSILNNQKLNAST 43
A IAV +FN++ N A T
Sbjct 90 AGIAVYAFNALGNRAADAAGT 110
>Q59652 Type II secretion system protein H [Pseudomonas aeruginosa]
Length=168
Score = 57.4 bits (137), Expect = 1e-14
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GFTLIELL+ + ++AI+A+ A+P+F + +L ++ EL + + AR++AV+ R+
Sbjct 9 GFTLIELLIIVVLLAIMASFAIPNFKQLTERNELQSAAEELNAMLQYARSEAVSQRRAIS 68
Query 66 VCLSTVSDCASALSITTNQTNRVYIAQLEKN-------VVAGTGSATQ-IAFRVEG--IP 115
+ D LSI + + A L K+ + A SA + + F G +P
Sbjct 69 IQALKDKDWGKGLSIGVLASGSI-AAPLRKHDGFRAATLTAKEKSAVEHLTFTANGTLVP 127
Query 116 ITTAKFTLTRNGQS 129
T F + +NG++
Sbjct 128 PTERTFAICQNGKT 141
Score = 15.8 bits (29), Expect = 5.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (6%)
Query 62 QTTGVCLSTVSDCASALSITTNQTNRVYIAQLEK 95
+T +C + +D LSI +Q R+ + K
Sbjct 131 RTFAICQNGKTDGGRVLSI--SQAGRIQLEPSSK 162
>E9KTN0 Type II secretion system protein H [Pseudomonas aeruginosa]
Length=168
Score = 57.0 bits (136), Expect = 2e-14
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GFTLIELL+ + ++AI+A+ A+P+F + +L +++ EL + + AR++AV+ R+
Sbjct 9 GFTLIELLIIVVLLAIMASFAIPNFKQLTERNELQSASEELNAMVQYARSEAVSQRRAIS 68
Query 66 VCLSTVSDCASALSITTNQTNRVYIAQLEKN-------VVAGTGSA-TQIAFRVEG--IP 115
+ D LSI + + A L K+ + A SA ++ F G +P
Sbjct 69 IQALKDHDWGKGLSIGVLDSGTI-AAPLRKHDGFRGATLTAREESAIAELTFTPNGTLLP 127
Query 116 ITTAKFTLTRNGQS 129
T F + +NG++
Sbjct 128 PTERTFAICQNGKA 141
>O52613 Fimbrillin [Xanthomonas citri]
Length=146
Score = 53.5 bits (127), Expect = 2e-13
Identities = 44/135 (33%), Positives = 66/135 (49%), Gaps = 11/135 (8%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVT- 59
M K GFTLIEL++ IA+IAILA IA+P + + + ++ A EL + +TQ T
Sbjct 1 MKKQQGFTLIELMIVIAIIAILAAIALPQYQNYVAKSQVTAGLAEL----SPGKTQYETL 56
Query 60 LRQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIP-ITT 118
L + G L+T + TTN+ + + + L + AG ++ + G P I
Sbjct 57 LNEGKGTTLTTADAVGLQATSTTNRCSAITV--LAPDATAGE-QTNALSCTLAGSPRIVG 113
Query 119 AKFTLTR--NGQSRC 131
K T R NG C
Sbjct 114 KKITWARDTNGVWTC 128
>F7IY52 Type II secretion system protein H [Pseudomonas amygdali
pv. tabaci]
Length=166
Score = 53.5 bits (127), Expect = 3e-13
Identities = 26/61 (43%), Positives = 39/61 (64%), Gaps = 0/61 (0%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GFTLIELL+ +A+I I+A + PSF ++ + + A+ +EL S I AR A+T QT
Sbjct 5 GFTLIELLIVVALIGIVANVPTPSFKQLIESSRGLAAGQELASGIRSARVAAITRNQTVT 64
Query 66 V 66
+
Sbjct 65 I 65
>F7IY49 Pilin [Pseudomonas amygdali pv. tabaci]
Length=131
Score = 52.8 bits (125), Expect = 3e-13
Identities = 31/122 (25%), Positives = 57/122 (47%), Gaps = 3/122 (2%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMS---KIAEARTQA 57
M GFTLIEL++ +A+I ILA +A+PS+ + + +A L S +AE +
Sbjct 1 MQTQKGFTLIELMIVVAIIGILAAVAIPSYQNYTLRAQASALLASLDSAKLAVAENYSNG 60
Query 58 VTLRQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPIT 117
G S +++C + ++ N+T +L A T + ++ +P++
Sbjct 61 SAQADVCGTGASAIANCTGSGVLSVNRTAPAVTVRLTPTFPAATTVGGSVTWQCVVVPVS 120
Query 118 TA 119
A
Sbjct 121 AA 122
>D8X0D1 PilE [Thermoanaerobacterium saccharolyticum]
Length=129
Score = 52.4 bits (124), Expect = 5e-13
Identities = 40/120 (33%), Positives = 55/120 (46%), Gaps = 20/120 (17%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GFTLIEL+V IA++ ILA IAVP + LN K+NA + IAEA + +T T
Sbjct 14 GFTLIELIVVIAILGILAAIAVPRYTGTLNQAKVNAD-KATAQTIAEAAARYITDTGDTN 72
Query 66 VCLSTV-------------SDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVE 112
V + + SD + I + TN V NV G +T + + E
Sbjct 73 VTFTKLVQNKYLDAQPTPQSDKTNGFVINVDTTNNVV------NVSIGPNGSTLASVKYE 126
>Q9APK5 FimA [Xanthomonas hyacinthi]
Length=145
Score = 52.0 bits (123), Expect = 9e-13
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (6%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEART----- 55
M + GFTLIEL+V IA+IAILA IA+P + + +++A E+ +A T
Sbjct 1 MKRQQGFTLIELMVVIAIIAILAAIALPMYQDYVAKSQVSAGLAEITPGKVQAETRIAEG 60
Query 56 QAVTLRQTTGVCLSTVSDCASALSI 80
+AVT Q ++ S C A+S+
Sbjct 61 KAVTTTQADVGLQASTSRCGIAVSV 85
Lambda K H a alpha
0.322 0.131 0.359 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 266115
Database: c011434d4f69d5a34198110f17ab5295.TrEMBL.fasta
Posted date: May 11, 2024 6:16 PM
Number of letters in database: 3,039
Number of sequences in database: 19
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
