Comparative Genomics

ACIAD3312 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6d55b2eeb31f5370cf30f52c59b3cdc7.SwissProt.fasta
           18 sequences; 3,239 total letters



Query= ACIAD3312

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F7I0 Ribosome maturation factor RimM [Acinetobacter baylyi (str...  380     4e-141
A5WBW9 Ribosome maturation factor RimM [Psychrobacter sp. (strain...  179     1e-61 
Q1Q8A5 Ribosome maturation factor RimM [Psychrobacter cryohalolen...  172     8e-59 
Q4FQ43 Ribosome maturation factor RimM [Psychrobacter arcticus (s...  171     2e-58 
A6W1U1 Ribosome maturation factor RimM [Marinomonas sp. (strain M...  152     5e-51 
B2K5Y9 Ribosome maturation factor RimM [Yersinia pseudotuberculos...  152     1e-50 
A7FLQ6 Ribosome maturation factor RimM [Yersinia pseudotuberculos...  152     1e-50 
Q66E58 Ribosome maturation factor RimM [Yersinia pseudotuberculos...  152     1e-50 
Q6D1T9 Ribosome maturation factor RimM [Pectobacterium atroseptic...  152     1e-50 
A1JK24 Ribosome maturation factor RimM [Yersinia enterocolitica s...  150     4e-50 
Q8ZBU8 Ribosome maturation factor RimM [Yersinia pestis]              150     6e-50 
Q1C410 Ribosome maturation factor RimM [Yersinia pestis bv. Antiq...  150     6e-50 
B1JJ90 Ribosome maturation factor RimM [Yersinia pseudotuberculos...  150     6e-50 
Q1CLJ4 Ribosome maturation factor RimM [Yersinia pestis bv. Antiq...  150     6e-50 
A9R0U4 Ribosome maturation factor RimM [Yersinia pestis bv. Antiq...  150     6e-50 
A4TQ63 Ribosome maturation factor RimM [Yersinia pestis (strain P...  149     2e-49 
P0A7X6 Ribosome maturation factor RimM [Escherichia coli (strain ...  143     3e-47 
Q5SJH5 Ribosome maturation factor RimM [Thermus thermophilus (str...  61.2    9e-16 


>Q6F7I0 Ribosome maturation factor RimM [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=182

 Score = 380 bits (977),  Expect = 4e-141
 Identities = 182/182 (100%), Positives = 182/182 (100%), Gaps = 0/182 (0%)

Query  1    MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKR  60
            MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKR
Sbjct  1    MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKR  60

Query  61   WKPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEE  120
            WKPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEE
Sbjct  61   WKPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEE  120

Query  121  EQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGV  180
            EQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGV
Sbjct  121  EQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGV  180

Query  181  DY  182
            DY
Sbjct  181  DY  182


>A5WBW9 Ribosome maturation factor RimM [Psychrobacter sp. (strain 
PRwf-1)]
Length=176

 Score = 179 bits (454),  Expect = 1e-61
 Identities = 82/171 (48%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query  12   IQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVS  71
            ++IGQL+  YG+ GWLWV+S TE    +F Y PW+++T  G++ + V +W+  G G+V  
Sbjct  10   MKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWRRQGTGIVAQ  69

Query  72   LKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHE  131
             + V DRN AE++ G +IW+ K  LP T+ DEYYWSDL GL+V+     +Q+  LG + E
Sbjct  70   FEQVPDRNVAETMNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVI----NKQDECLGTVKE  125

Query  132  LFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGVDY  182
            LFETGA+ +M V  + DS+D E RMIPWHK  V  VDL AGR+ V+W  D+
Sbjct  126  LFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVVDLAAGRMVVDWERDF  176


>Q1Q8A5 Ribosome maturation factor RimM [Psychrobacter cryohalolentis 
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)]
Length=177

 Score = 172 bits (436),  Expect = 8e-59
 Identities = 80/171 (47%), Positives = 111/171 (65%), Gaps = 4/171 (2%)

Query  12   IQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVS  71
            ++IGQL+  YG+ GWLWV+S T+  + +FD  PW+++T  G + + VK W+  G G+V  
Sbjct  11   MKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQ  70

Query  72   LKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHE  131
             + + DRN AE++ G T+WV +  LP+   DEYYWSDL  L V+     EQ+  LG I E
Sbjct  71   FEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVM----NEQDEYLGDITE  126

Query  132  LFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGVDY  182
            +FETGA+ +M V AT DS+D EER+IPWHK  V +VDL    + V W  DY
Sbjct  127  MFETGAHAIMRVAATTDSLDKEERLIPWHKQTVVKVDLTEKTVLVAWPSDY  177


>Q4FQ43 Ribosome maturation factor RimM [Psychrobacter arcticus 
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=177

 Score = 171 bits (434),  Expect = 2e-58
 Identities = 80/171 (47%), Positives = 112/171 (65%), Gaps = 4/171 (2%)

Query  12   IQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVS  71
            ++IGQL+  YG+ GWLWV+S T+  + +FD  PW+++T  G + + VK W+  G G+V  
Sbjct  11   MKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWRQQGTGVVAQ  70

Query  72   LKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHE  131
             + + DRN AE++ G T+WV +  LP+   DEYYWSDL  L V+     EQ+  LG I E
Sbjct  71   FEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVTLRVI----NEQDEYLGDITE  126

Query  132  LFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGVDY  182
            +FETGA+ +M V AT+DS+D EER+IPWHK  V +VDL    + V W  DY
Sbjct  127  MFETGAHAIMRVAATSDSLDKEERLIPWHKQTVVKVDLTEKTVLVAWPSDY  177


>A6W1U1 Ribosome maturation factor RimM [Marinomonas sp. (strain 
MWYL1)]
Length=181

 Score = 152 bits (385),  Expect = 5e-51
 Identities = 70/176 (40%), Positives = 117/176 (66%), Gaps = 5/176 (3%)

Query  8    PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKG  67
            PE  + +G++ S YG+ GW+ +YS+TEPM  +FDY  W+++T +GW+TV++ + +  G+G
Sbjct  10   PEQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVELSQGRLQGRG  69

Query  68   LVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLG  127
            LV S+K  +DR+  + + G  +++  ++LP+ +  +YYWS L+GL V+     ++ V LG
Sbjct  70   LVASVKGYTDRDQVKDICGMDVYIDAAELPELEEGDYYWSQLEGLRVI----TKEGVLLG  125

Query  128  QIHELFETGANDVMVVRATADSVDAEERMIPWHKDV-VQRVDLEAGRIYVNWGVDY  182
            ++ +L ETGANDV+VVRA   S D EER+IP+     V  +DLE   + V+W  ++
Sbjct  126  KVSQLMETGANDVIVVRACEGSFDREERLIPYAPGTYVLNIDLEQQEMVVDWDPEF  181


>B2K5Y9 Ribosome maturation factor RimM [Yersinia pseudotuberculosis 
serotype IB (strain PB1/+)]
Length=182

 Score = 152 bits (383),  Expect = 1e-50
 Identities = 75/174 (43%), Positives = 113/174 (65%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR+AA  L    I+V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDRDAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>A7FLQ6 Ribosome maturation factor RimM [Yersinia pseudotuberculosis 
serotype O:1b (strain IP 31758)]
Length=182

 Score = 152 bits (383),  Expect = 1e-50
 Identities = 75/174 (43%), Positives = 113/174 (65%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR+AA  L    I+V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDRDAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>Q66E58 Ribosome maturation factor RimM [Yersinia pseudotuberculosis 
serotype I (strain IP32953)]
Length=182

 Score = 152 bits (383),  Expect = 1e-50
 Identities = 75/174 (43%), Positives = 113/174 (65%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR+AA  L    I+V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDRDAANLLTNCEIFVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>Q6D1T9 Ribosome maturation factor RimM [Pectobacterium atrosepticum 
(strain SCRI 1043 / ATCC BAA-672)]
Length=182

 Score = 152 bits (383),  Expect = 1e-50
 Identities = 77/173 (45%), Positives = 114/173 (66%), Gaps = 6/173 (3%)

Query  8    PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKG  67
            P + I +G++ SAYG+ GWL V+S+TE   ++FDY PWFI++K+GWQ V+++ WK H + 
Sbjct  10   PVNPIVMGKIGSAYGIRGWLRVFSSTEDADSIFDYQPWFIQSKSGWQLVEIEGWKYHNQD  69

Query  68   LVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLG  127
            L++ +K   DR+AA  L    I V  SQLP   V +YYW DL G  V+ +   E    LG
Sbjct  70   LIIKVKGADDRDAANLLTNCEIVVDSSQLPDLGVGDYYWKDLIGCQVVTVTGYE----LG  125

Query  128  QIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            +I ++ ETG+NDVMV++A   D+   +ER++P+  + VV+RVDL A  I V+W
Sbjct  126  KIIDMMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSAQTIEVDW  178


>A1JK24 Ribosome maturation factor RimM [Yersinia enterocolitica 
serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)]
Length=182

 Score = 150 bits (379),  Expect = 4e-50
 Identities = 76/174 (44%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VPE  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR+AA  L    I V   QLP+ + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDRDAANLLTNCEIVVDSKQLPELEEDDYYWKDLMGCQVVTTAGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V++ VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDW  178


>Q8ZBU8 Ribosome maturation factor RimM [Yersinia pestis]
Length=182

 Score = 150 bits (378),  Expect = 6e-50
 Identities = 75/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>Q1C410 Ribosome maturation factor RimM [Yersinia pestis bv. Antiqua 
(strain Antiqua)]
Length=182

 Score = 150 bits (378),  Expect = 6e-50
 Identities = 75/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>B1JJ90 Ribosome maturation factor RimM [Yersinia pseudotuberculosis 
serotype O:3 (strain YPIII)]
Length=182

 Score = 150 bits (378),  Expect = 6e-50
 Identities = 75/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>Q1CLJ4 Ribosome maturation factor RimM [Yersinia pestis bv. Antiqua 
(strain Nepal516)]
Length=182

 Score = 150 bits (378),  Expect = 6e-50
 Identities = 75/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>A9R0U4 Ribosome maturation factor RimM [Yersinia pestis bv. Antiqua 
(strain Angola)]
Length=182

 Score = 150 bits (378),  Expect = 6e-50
 Identities = 75/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVMVV+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>A4TQ63 Ribosome maturation factor RimM [Yersinia pestis (strain 
Pestoides F)]
Length=182

 Score = 149 bits (375),  Expect = 2e-49
 Identities = 74/174 (43%), Positives = 111/174 (64%), Gaps = 6/174 (3%)

Query  7    VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGK  66
            VP+  I +G++ S YG+ GWL V+S+TE   ++FDY PWFI+    WQ V+++ WK H +
Sbjct  9    VPDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQ  68

Query  67   GLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNL  126
             L++ +K V DR AA  L    I V  +QLP  + D+YYW DL G  V+     E    L
Sbjct  69   DLIIKVKGVDDREAANLLTNCEIIVDSTQLPALEEDDYYWKDLMGCQVVTTTGYE----L  124

Query  127  GQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
            G+I ++ ETG+NDVM+V+A   D+   +ER++P+ H  V+++VDL A R+ V+W
Sbjct  125  GKIIDMMETGSNDVMLVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDW  178


>P0A7X6 Ribosome maturation factor RimM [Escherichia coli (strain 
K12)]
Length=182

 Score = 143 bits (360),  Expect = 3e-47
 Identities = 70/177 (40%), Positives = 110/177 (62%), Gaps = 6/177 (3%)

Query  4    TQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKP  63
            T   P D I +G++ S+YG+ GWL V+S+TE   ++FDY PWFI+    WQ V ++ WK 
Sbjct  6    TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH  65

Query  64   HGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQE  123
            H + +++ LK V DR+AA  L    I V  SQLP+ +  +YYW DL G  V+      + 
Sbjct  66   HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV----TTEG  121

Query  124  VNLGQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW  178
             +LG++ ++ ETG+NDV+V++A   D+   +ER++P+    V+++VDL    I V+W
Sbjct  122  YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW  178


>Q5SJH5 Ribosome maturation factor RimM [Thermus thermophilus 
(strain ATCC 27634 / DSM 579 / HB8)]
Length=162

 Score = 61.2 bits (147),  Expect = 9e-16
 Identities = 50/168 (30%), Positives = 89/168 (53%), Gaps = 18/168 (11%)

Query  12   IQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTV-DVKRWKPHGKGLVV  70
            ++IG+  + Y L G L      EP+    + +  ++E   GW+ + D+ R    G+ LVV
Sbjct  4    VEIGRFGAPYALKGGLRFRG--EPVVLHLERV--YVEGH-GWRAIEDLYRV---GEELVV  55

Query  71   SLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIH  130
             L  V+DR  AE+L+G  ++   + LP  +   YY+  L GL V     E ++V  G++ 
Sbjct  56   HLAGVTDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVY---VEGRQV--GEVV  110

Query  131  ELFETGANDVMVVRATADSV-DAEERMIPWHKDVVQRVDLEAGRIYVN  177
            ++ + GA DV+++R   + + D  ER++P     V+   +E G I+V+
Sbjct  111  DILDAGAQDVLIIRGVGERLRDRAERLVPLQAPYVR---VEEGSIHVD  155



Lambda      K        H        a         alpha
   0.319    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 370475


  Database: 6d55b2eeb31f5370cf30f52c59b3cdc7.SwissProt.fasta
    Posted date:  Jun 2, 2024  4:57 PM
  Number of letters in database: 3,239
  Number of sequences in database:  18



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40