BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c9d06ba531a5101d823cb270e67b1532.SwissProt.fasta
9 sequences; 2,670 total letters
Query= ACIAD3303
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
P0CL04 Threonine/homoserine exporter RhtA [Salmonella typhimurium... 238 3e-81
E1W9W8 Threonine/homoserine exporter RhtA [Salmonella typhimurium... 238 3e-81
P0AA68 Threonine/homoserine exporter RhtA [Escherichia coli O6:H1... 234 5e-80
P0AA69 Threonine/homoserine exporter RhtA [Escherichia coli O157:H7] 234 5e-80
P0AA67 Threonine/homoserine exporter RhtA [Escherichia coli (stra... 234 5e-80
P38943 Uncharacterized transporter CKL_3017 [Clostridium kluyveri... 58.9 1e-13
Q9L6P1 Protein RarD [Salmonella typhimurium (strain LT2 / SGSC141... 36.6 3e-06
Q8Z3B1 Protein RarD [Salmonella typhi] 36.6 3e-06
P27844 Protein RarD [Escherichia coli (strain K12)] 34.7 1e-05
>P0CL04 Threonine/homoserine exporter RhtA [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=295
Score = 238 bits (606), Expect = 3e-81
Identities = 131/278 (47%), Positives = 181/278 (65%), Gaps = 1/278 (0%)
Query 14 VLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAILFQAWKIQWRAIRWKA 73
+L LL+AM S+QS SLAK LF V+A+RL G +IL F+ W++++ +
Sbjct 14 ILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLP 73
Query 74 IVSYGFALAGMNALFYLSLERLPLGIAVAFEFIGPLSVALYYARQKYDFIWVSFAILGLL 133
++ YG +L GMN LFYLS++ +PLGIAVA EF GPL+VAL+ +R+ DFIWV A+LGL
Sbjct 74 LLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLW 133
Query 134 LLFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTVFLGMTVGMLILLPI 193
L P Q +DLTG A+ AGACWA+YI+ GQ+ G TV +G + +I +PI
Sbjct 134 FLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVAVGSLIAAIIFVPI 193
Query 194 ALWMGAIDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFS 253
+ A D ++ + +A+A+L++ALP+SLEM+AL RL +FGTLMS+EPA+AA S
Sbjct 194 GA-VQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252
Query 254 GFVFLGEKLMWNQWLALVTIIIASVGCTITTQLARQSK 291
G +FLGE L Q LAL II AS+G T+T + Q K
Sbjct 253 GMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIK 290
>E1W9W8 Threonine/homoserine exporter RhtA [Salmonella typhimurium
(strain SL1344)]
Length=295
Score = 238 bits (606), Expect = 3e-81
Identities = 131/278 (47%), Positives = 181/278 (65%), Gaps = 1/278 (0%)
Query 14 VLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAILFQAWKIQWRAIRWKA 73
+L LL+AM S+QS SLAK LF V+A+RL G +IL F+ W++++ +
Sbjct 14 ILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLP 73
Query 74 IVSYGFALAGMNALFYLSLERLPLGIAVAFEFIGPLSVALYYARQKYDFIWVSFAILGLL 133
++ YG +L GMN LFYLS++ +PLGIAVA EF GPL+VAL+ +R+ DFIWV A+LGL
Sbjct 74 LLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLW 133
Query 134 LLFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTVFLGMTVGMLILLPI 193
L P Q +DLTG A+ AGACWA+YI+ GQ+ G TV +G + +I +PI
Sbjct 134 FLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVAVGSLIAAIIFVPI 193
Query 194 ALWMGAIDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFS 253
+ A D ++ + +A+A+L++ALP+SLEM+AL RL +FGTLMS+EPA+AA S
Sbjct 194 GA-VQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252
Query 254 GFVFLGEKLMWNQWLALVTIIIASVGCTITTQLARQSK 291
G +FLGE L Q LAL II AS+G T+T + Q K
Sbjct 253 GMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIK 290
>P0AA68 Threonine/homoserine exporter RhtA [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=295
Score = 234 bits (598), Expect = 5e-80
Identities = 129/272 (47%), Positives = 179/272 (66%), Gaps = 1/272 (0%)
Query 14 VLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAILFQAWKIQWRAIRWKA 73
++ LLVAM S+Q SLAK LF V+A+RL G +IL F+ W++++ +
Sbjct 14 IVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLP 73
Query 74 IVSYGFALAGMNALFYLSLERLPLGIAVAFEFIGPLSVALYYARQKYDFIWVSFAILGLL 133
++ YG +L GMN LFYLS++ +PLGIAVA EF GPL+VAL+ +R+ DF+WV A+LGL
Sbjct 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLW 133
Query 134 LLFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTVFLGMTVGMLILLPI 193
L P Q +DLTG A+ AGACWA+YI++GQ+ G TV +G + LI +PI
Sbjct 134 FLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPI 193
Query 194 ALWMGAIDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFS 253
+ A + ++ I +A+AIL++ALP+SLEM+AL RL +FGTLMS+EPA+AA S
Sbjct 194 GA-LQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252
Query 254 GFVFLGEKLMWNQWLALVTIIIASVGCTITTQ 285
G +FLGE L Q LAL II AS+G T+T +
Sbjct 253 GMIFLGETLTPIQLLALGAIIAASMGSTLTVR 284
>P0AA69 Threonine/homoserine exporter RhtA [Escherichia coli O157:H7]
Length=295
Score = 234 bits (598), Expect = 5e-80
Identities = 129/272 (47%), Positives = 179/272 (66%), Gaps = 1/272 (0%)
Query 14 VLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAILFQAWKIQWRAIRWKA 73
++ LLVAM S+Q SLAK LF V+A+RL G +IL F+ W++++ +
Sbjct 14 IVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLP 73
Query 74 IVSYGFALAGMNALFYLSLERLPLGIAVAFEFIGPLSVALYYARQKYDFIWVSFAILGLL 133
++ YG +L GMN LFYLS++ +PLGIAVA EF GPL+VAL+ +R+ DF+WV A+LGL
Sbjct 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLW 133
Query 134 LLFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTVFLGMTVGMLILLPI 193
L P Q +DLTG A+ AGACWA+YI++GQ+ G TV +G + LI +PI
Sbjct 134 FLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPI 193
Query 194 ALWMGAIDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFS 253
+ A + ++ I +A+AIL++ALP+SLEM+AL RL +FGTLMS+EPA+AA S
Sbjct 194 GA-LQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252
Query 254 GFVFLGEKLMWNQWLALVTIIIASVGCTITTQ 285
G +FLGE L Q LAL II AS+G T+T +
Sbjct 253 GMIFLGETLTPIQLLALGAIIAASMGSTLTVR 284
>P0AA67 Threonine/homoserine exporter RhtA [Escherichia coli (strain
K12)]
Length=295
Score = 234 bits (598), Expect = 5e-80
Identities = 129/272 (47%), Positives = 179/272 (66%), Gaps = 1/272 (0%)
Query 14 VLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAILFQAWKIQWRAIRWKA 73
++ LLVAM S+Q SLAK LF V+A+RL G +IL F+ W++++ +
Sbjct 14 IVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLP 73
Query 74 IVSYGFALAGMNALFYLSLERLPLGIAVAFEFIGPLSVALYYARQKYDFIWVSFAILGLL 133
++ YG +L GMN LFYLS++ +PLGIAVA EF GPL+VAL+ +R+ DF+WV A+LGL
Sbjct 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLW 133
Query 134 LLFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTVFLGMTVGMLILLPI 193
L P Q +DLTG A+ AGACWA+YI++GQ+ G TV +G + LI +PI
Sbjct 134 FLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPI 193
Query 194 ALWMGAIDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFS 253
+ A + ++ I +A+AIL++ALP+SLEM+AL RL +FGTLMS+EPA+AA S
Sbjct 194 GA-LQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252
Query 254 GFVFLGEKLMWNQWLALVTIIIASVGCTITTQ 285
G +FLGE L Q LAL II AS+G T+T +
Sbjct 253 GMIFLGETLTPIQLLALGAIIAASMGSTLTVR 284
>P38943 Uncharacterized transporter CKL_3017 [Clostridium kluyveri
(strain ATCC 8527 / DSM 555 / NCIMB 10680)]
Length=311
Score = 58.9 bits (141), Expect = 1e-13
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 6/157 (4%)
Query 128 AILGLLLLFPFQQASHGL----DLTGIVFAVAAGACWAMYIIAGQKPSGISGNHTV-FLG 182
+++G++++F + G+ DL GI FA+ A W++Y + +K I G + +
Sbjct 132 SLIGVVIIFNPAKVMEGIGGSRDLIGICFALVAAVVWSLYTVISKKRIEIYGGYVFNCIS 191
Query 183 MTVGMLILLPIALWMGA-IDRVFELPHIFYFIALAILASALPFSLEMLALKRLTALSFGT 241
G++ LL + + G I L +I + + I A+ + + A+K +A++ T
Sbjct 192 FFFGVIALLILLVVTGRPIFSGITLNNILVLLYMGIFIKAVGYICYLGAIKETSAVTAST 251
Query 242 LMSLEPAVAAFSGFVFLGEKLMWNQWLALVTIIIASV 278
+ ++PA+A + LGE + N + +V III S+
Sbjct 252 VFLIKPALATVLAILILGESIEVNVVIGIVFIIIGSI 288
Score = 26.9 bits (58), Expect = 0.003
Identities = 27/138 (20%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query 149 GIVFAVAAGACWAMYIIAGQ---KPSGISGNHTVFLGMTVGMLILLPIALWMGAIDRVFE 205
G +F + ++ I+G+ + + + + +G +ILLP+A+ + ++
Sbjct 4 GYIFILLTAIFYSTQEISGKMLAQKGAMDPFQVMMIVFLIGAIILLPMAVKDIKVKKLKL 63
Query 206 LPHIFYFIAL-AILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFSGFVFLGEKLMW 264
+ ++AL ILA ++ S+ A+ A + L + L EK+
Sbjct 64 TGNDLGYLALCGILAVSISMSMLQFAVTYTKASTAAVLFCTNAVFTIPFAYFILKEKI-- 121
Query 265 NQWLALVTIIIASVGCTI 282
+ + +V+II++ +G I
Sbjct 122 -KGITIVSIIVSLIGVVI 138
Score = 22.3 bits (46), Expect = 0.098
Identities = 14/48 (29%), Positives = 21/48 (44%), Gaps = 0/48 (0%)
Query 11 LQAVLFLLVAMISVQSSGSLAKVLFQSYPVLTVSAMRLFFGAIILAIL 58
L + F LVA + ++K + Y + + FFG I L IL
Sbjct 155 LIGICFALVAAVVWSLYTVISKKRIEIYGGYVFNCISFFFGVIALLIL 202
>Q9L6P1 Protein RarD [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=294
Score = 36.6 bits (83), Expect = 3e-06
Identities = 33/142 (23%), Positives = 59/142 (42%), Gaps = 10/142 (7%)
Query 149 GIVFAVAAGACW----AMYIIAGQKPSGISGNHTVFLGMTVGMLILLPIALWMGAIDRVF 204
G++ A+AA W A + + P+ H V M+ LL ++ + R+
Sbjct 9 GVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFF-MVALLSVSRQWRQVKRLL 67
Query 205 ELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFSGFVFLGEKLMW 264
+ P + +AL+ + + L + A+ L + P V G +FLGE+
Sbjct 68 KTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRR 127
Query 265 NQWLALVTIIIASVGCTITTQL 286
QWLA++ + C + QL
Sbjct 128 MQWLAVILAV-----CGVLVQL 144
Score = 22.7 bits (47), Expect = 0.073
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query 53 IILAILFQAWKIQWRAIRWKAIVSYGFALAGMNALFYL--SLERLPLGIAVAFEFIG 107
I+L ++F + +R ++W A++ A+ G+ + SL + LG+A +F F G
Sbjct 114 ILLGMIFLGER--FRRMQWLAVI---LAVCGVLVQLWTFGSLPIIALGLAFSFAFYG 165
Score = 21.2 bits (43), Expect = 0.22
Identities = 17/47 (36%), Positives = 21/47 (45%), Gaps = 11/47 (23%)
Query 94 RLPLGIAVAFEFIGP-----LSVALYYARQKYD------FIWVSFAI 129
RL L F++IGP L+V Y D FIWV+ AI
Sbjct 236 RLRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAI 282
Score = 18.1 bits (35), Expect = 2.1
Identities = 47/234 (20%), Positives = 86/234 (37%), Gaps = 38/234 (16%)
Query 8 KSQLQAVLFLLVAMISVQSSGSLAKVLFQ--SYPVLTVSAMRLFFGAIILAILFQAWKIQ 65
K Q VL L A + + K+++ + +LT + FF + L + + W+
Sbjct 4 KQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQV 63
Query 66 WRAIRWKA---IVSYGFALAGMN-ALFYLSLERLPLGIAVAFEFIGPL------SVALYY 115
R ++ +++ L G N LF ++ + A FI PL + L
Sbjct 64 KRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGE 123
Query 116 ARQKYDFIWVSFAILGLL-------------LLFPFQQASHGLDLTGIVFAVAAG----A 158
++ ++ V A+ G+L L F A +GL I G
Sbjct 124 RFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLVET 183
Query 159 CWAMYIIA------GQKPSGISGNHTVFLG---MTVGMLILLPIALWMGAIDRV 203
W + + A P+ G + + L M G++ +P+ + GA R+
Sbjct 184 LWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRL 237
>Q8Z3B1 Protein RarD [Salmonella typhi]
Length=294
Score = 36.6 bits (83), Expect = 3e-06
Identities = 33/142 (23%), Positives = 59/142 (42%), Gaps = 10/142 (7%)
Query 149 GIVFAVAAGACW----AMYIIAGQKPSGISGNHTVFLGMTVGMLILLPIALWMGAIDRVF 204
G++ A+AA W A + + P+ H V M+ LL ++ + R+
Sbjct 9 GVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFF-MVALLSVSRQWRQVKRLL 67
Query 205 ELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFSGFVFLGEKLMW 264
+ P + +AL+ + + L + A+ L + P V G +FLGE+
Sbjct 68 KTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRR 127
Query 265 NQWLALVTIIIASVGCTITTQL 286
QWLA++ + C + QL
Sbjct 128 MQWLAVILAV-----CGVLVQL 144
Score = 22.7 bits (47), Expect = 0.073
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query 53 IILAILFQAWKIQWRAIRWKAIVSYGFALAGMNALFYL--SLERLPLGIAVAFEFIG 107
I+L ++F + +R ++W A++ A+ G+ + SL + LG+A +F F G
Sbjct 114 ILLGMIFLGER--FRRMQWLAVI---LAVCGVLVQLWTFGSLPIIALGLAFSFAFYG 165
Score = 21.2 bits (43), Expect = 0.22
Identities = 17/47 (36%), Positives = 21/47 (45%), Gaps = 11/47 (23%)
Query 94 RLPLGIAVAFEFIGP-----LSVALYYARQKYD------FIWVSFAI 129
RL L F++IGP L+V Y D FIWV+ AI
Sbjct 236 RLRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAI 282
Score = 18.9 bits (37), Expect = 1.2
Identities = 56/273 (21%), Positives = 106/273 (39%), Gaps = 33/273 (12%)
Query 8 KSQLQAVLFLLVAMISVQSSGSLAKVLFQ--SYPVLTVSAMRLFFGAIILAILFQAWKIQ 65
K Q VL L A + + K+++ + +LT + FF + L + + W+
Sbjct 4 KQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQV 63
Query 66 WRAIRWKA---IVSYGFALAGMN-ALFYLSLERLPLGIAVAFEFIGPL------SVALYY 115
R ++ +++ L G N LF ++ + A FI PL + L
Sbjct 64 KRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGE 123
Query 116 ARQKYDFIWVSFAILGLLL-LFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGIS 174
++ ++ V A+ G+L+ L+ F + A+ +A Y + +K + +
Sbjct 124 RFRRMQWLAVILAVCGVLVQLWTFGSLP--------IIALGLAFSFAFYGLVRKKIAVEA 175
Query 175 GNHTVFLGMTVGMLILLPIA---LWMGAIDRVFELPHIFYFIALAILASALPFSLEML-- 229
GM V L LLP+A L+ A + + L ++A+ + ++ +L
Sbjct 176 QT-----GMLVETLWLLPVAAIYLFSIADSATSHMGQNALSLNLLLMAAGVVTTIPLLCF 230
Query 230 --ALKRLTALSFGTLMSLEPAVAAFSGFVFLGE 260
A RL + G + P + F GE
Sbjct 231 TGAATRLRLSTLGFFQYIGPTLMFLLAVTFYGE 263
>P27844 Protein RarD [Escherichia coli (strain K12)]
Length=296
Score = 34.7 bits (78), Expect = 1e-05
Identities = 32/142 (23%), Positives = 58/142 (41%), Gaps = 10/142 (7%)
Query 149 GIVFAVAAGACW----AMYIIAGQKPSGISGNHTVFLGMTVGMLILLPIALWMGAIDRVF 204
G++ A+AA W A + + P+ H V M++L+ I + +
Sbjct 9 GVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLI 67
Query 205 ELPHIFYFIALAILASALPFSLEMLALKRLTALSFGTLMSLEPAVAAFSGFVFLGEKLMW 264
+ P + +A++ + + L + A+ L + P V G +FLGE+
Sbjct 68 QTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRR 127
Query 265 NQWLALVTIIIASVGCTITTQL 286
QWLA++ I C + QL
Sbjct 128 MQWLAVILAI-----CGVLVQL 144
Score = 24.3 bits (51), Expect = 0.024
Identities = 19/66 (29%), Positives = 30/66 (45%), Gaps = 11/66 (17%)
Query 88 FYLSLERLPLGIAVAFEFIGP-----LSVALYYARQKYD------FIWVSFAILGLLLLF 136
F + RL L F++IGP L+V Y + D FIWV+ AI + ++
Sbjct 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIY 289
Query 137 PFQQAS 142
++ S
Sbjct 290 TQRRTS 295
Score = 23.5 bits (49), Expect = 0.041
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query 53 IILAILFQAWKIQWRAIRWKAIVSYGFALAGMNALFYL--SLERLPLGIAVAFEFIG 107
I+L ++F + +R ++W A++ A+ G+ + SL + LG+A +F F G
Sbjct 114 IVLGMIFLGER--FRRMQWLAVI---LAICGVLVQLWTFGSLPIIALGLAFSFAFYG 165
Score = 19.2 bits (38), Expect = 0.92
Identities = 56/274 (20%), Positives = 106/274 (39%), Gaps = 33/274 (12%)
Query 8 KSQLQAVLFLLVAMISVQSSGSLAKVLFQ--SYPVLTVSAMRLFFGAIILAILFQAWKIQ 65
K Q VL L A + + K+++ + +LT + FF ++L + + W
Sbjct 4 KQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYL 63
Query 66 WRAIRWKA---IVSYGFALAGMN-ALFYLSLERLPLGIAVAFEFIGPL------SVALYY 115
I+ +++ L G N LF ++ + A FI PL + L
Sbjct 64 KTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE 123
Query 116 ARQKYDFIWVSFAILGLLL-LFPFQQASHGLDLTGIVFAVAAGACWAMYIIAGQKPSGIS 174
++ ++ V AI G+L+ L+ F + A+ +A Y + +K + +
Sbjct 124 RFRRMQWLAVILAICGVLVQLWTFGSLP--------IIALGLAFSFAFYGLVRKKIAVEA 175
Query 175 GNHTVFLGMTVGMLILLPI-ALWMGAI-----DRVFELPHIFYFIALAI-LASALPFSLE 227
GM + + LLP+ A+++ AI + + P + +A + + +P
Sbjct 176 QT-----GMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCF 230
Query 228 MLALKRLTALSFGTLMSLEPAVAAFSGFVFLGEK 261
A RL + G + P + F GEK
Sbjct 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK 264
Lambda K H a alpha
0.333 0.141 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 586755
Database: c9d06ba531a5101d823cb270e67b1532.SwissProt.fasta
Posted date: May 20, 2024 11:30 PM
Number of letters in database: 2,670
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
