BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c8c3f4fc1a72703b8086ffb6e3fc33e7.SwissProt.fasta
19 sequences; 5,567 total letters
Query= ACIAD3274
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis... 177 1e-57
O32186 Uncharacterized HTH-type transcriptional regulator YusT [B... 174 3e-56
A7Z5E4 HTH-type transcriptional regulator YofA [Bacillus velezens... 163 4e-52
P77309 Uncharacterized HTH-type transcriptional regulator YneJ [E... 159 2e-50
Q9HWH8 HTH-type transcriptional regulator NmoR [Pseudomonas aerug... 155 4e-49
Q44311 HTH-type transcriptional regulator SoxR [Arthrobacter sp. ... 155 6e-49
A0R8S0 HTH-type transcriptional regulator CzcR [Bacillus thuringi... 152 1e-47
Q6HPH4 HTH-type transcriptional regulator CzcR [Bacillus thuringi... 151 2e-47
Q63H01 HTH-type transcriptional regulator CzcR [Bacillus cereus (... 149 1e-46
Q73EY2 HTH-type transcriptional regulator CzcR [Bacillus cereus (... 149 1e-46
Q81VJ1 HTH-type transcriptional regulator CzcR [Bacillus anthracis] 148 2e-46
O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis... 143 2e-44
P71025 HTH-type transcriptional regulator CzcR [Bacillus subtilis... 137 4e-42
P20668 Transcriptional dual regulator GltC [Bacillus subtilis (st... 100 4e-28
P05827 HTH-type transcriptional regulator IlvY [Escherichia coli ... 99.4 1e-27
P0A2Q2 HTH-type transcriptional activator IlvY [Salmonella typhim... 97.4 5e-27
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 84.7 2e-22
O68014 HTH-type transcriptional regulator BenM [Acinetobacter bay... 77.8 7e-20
Q55459 HTH-type transcriptional activator CmpR [Synechocystis sp.... 77.4 1e-19
>P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis
(strain 168)]
Length=296
Score = 177 bits (450), Expect = 1e-57
Identities = 97/274 (35%), Positives = 167/274 (61%), Gaps = 2/274 (1%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+F T G+++KA++ L+ SN+T +I+QLE +L + LFYR + + LTP G+I + Y
Sbjct 8 VFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPPGQILVSY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
KIL +EA+ ++ + PSGPLRIG++E++A+ LP+LLA Y+ YP+V + ++TG
Sbjct 68 SEKILHTIEEARAAMGESSAPSGPLRIGSMETTAAVWLPQLLAHYNNLYPNVDLNLVTGP 127
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
+Q + V ++L+ A ++G I+ P L + ++ E MVL+ AS +I + +D+ + +
Sbjct 128 TEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLVTSASHPVISSIQDVQTQTML 187
Query 181 MWTEGCPYRAALETWLKLKH-ISLPITSITNYATIIGCVSAGLGVSLIPKSIYAQYKNLP 239
++ +GC YRA L L+ + + + + IIGCVSAGLG+SL+P+SI A ++
Sbjct 188 VFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGISLLPRSIIASHEKEG 247
Query 240 QLCSYEF-DRLATIPVHFFWHQKILNHKARDAFL 272
++ S+ D+ + + F + L A AFL
Sbjct 248 RIRSHTISDKYSFVSTMFIRRKDTLITPALSAFL 281
>O32186 Uncharacterized HTH-type transcriptional regulator YusT
[Bacillus subtilis (strain 168)]
Length=295
Score = 174 bits (441), Expect = 3e-56
Identities = 91/237 (38%), Positives = 148/237 (62%), Gaps = 4/237 (2%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ V GT+ KA++QL V SN+T RI+QLE ELG+ LF R + + L+ SG++ L+Y
Sbjct 8 VFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSASGKLLLDY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KI+ L DEA +++ A PSGPL IG +++A+ LP+LLA Y++ +P+V + + TG
Sbjct 68 ANKIIGLLDEASKALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQLSLTTGH 127
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
+ LL V +++LD A + P L ++E V+++ AS + + E+ I K I
Sbjct 128 TQFLLDKVLRYELDGAFIGCECHHPELESYPAFEEEPVVVSAAS---VPDVEEAITKPIL 184
Query 181 MWTEGCPYRAALETWLKLKHISLP-ITSITNYATIIGCVSAGLGVSLIPKSIYAQYK 236
+++ GC YR LE WL+ ++ P I IIG V+AGLG+SL+P+++ +++
Sbjct 185 VYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKHE 241
>A7Z5E4 HTH-type transcriptional regulator YofA [Bacillus velezensis
(strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)]
Length=288
Score = 163 bits (412), Expect = 4e-52
Identities = 89/248 (36%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ V G+++KA+ LH V SN+T RI+QLE +L + LFYR + + LTP+GE L+
Sbjct 8 IFQAVARKGSISKAAESLHYVQSNVTNRIQQLERQLQTQLFYRTNRGMTLTPAGENLLKD 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+IL L EA+++ P+GPLRIG++E++A+ HLP+ +Y YP V + + TG
Sbjct 68 ADRILQLLHEAQKTAQEAGDPNGPLRIGSLETAAAVHLPQFFTEYCSRYPKVQLSLSTGD 127
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
L+ + ++LD A V G +++ L +V ++QE +VL + G + +DL+ + I
Sbjct 128 THTLVQHILHYELDGAFVYGPVEYEDLEQVAVFQEELVLASNKREGSL---QDLLREPIL 184
Query 181 MWTEGCPYRAALETWLKLKHISLPITSITNYAT---IIGCVSAGLGVSLIPKSIYAQYKN 237
+ GC +R ++ LK + ++P I + T IIG V AG+GVS +P S ++N
Sbjct 185 YFAAGCSHRRKIKNILKEE--AVPAHKIIEFGTLEAIIGAVQAGMGVSFLPASAVRYFQN 242
Query 238 LPQLCSYE 245
L +E
Sbjct 243 RKNLFLHE 250
>P77309 Uncharacterized HTH-type transcriptional regulator YneJ
[Escherichia coli (strain K12)]
Length=293
Score = 159 bits (401), Expect = 2e-50
Identities = 81/232 (35%), Positives = 136/232 (59%), Gaps = 2/232 (1%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
MF V E G++ +A+ ++H VPSN+TTR++QLE ELG LF RE + L+L+P+G FL Y
Sbjct 8 MFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPAGHNFLRY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+ILAL DEA RS+ P G +G++ES+A+ +P LA++++ YP + + TG
Sbjct 68 SQQILALVDEA-RSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQFSLSTGP 126
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
+L V + KL+AA + G I+ ++ + +Y+E ++++ P + + I+
Sbjct 127 SGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIY 186
Query 181 MWTEGCPYRAALETWLKLKHISL-PITSITNYATIIGCVSAGLGVSLIPKSI 231
+ C YR E+W + I + +Y ++ CV AG G++LIP+S+
Sbjct 187 AFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSM 238
>Q9HWH8 HTH-type transcriptional regulator NmoR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=284
Score = 155 bits (392), Expect = 4e-49
Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 14/266 (5%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+F+ V ++ +A+ +L SN+TTRI+QLEE+LG LF R+GK + LT G FL Y
Sbjct 8 IFRAVAHEASVTRAAQRLQRAQSNVTTRIRQLEEDLGVELFLRDGKRMSLTERGSEFLAY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
++LAL DEA++S+HP A P G LR+G++ES+A++ LP LLA YH+ P V++++ TGT
Sbjct 68 AEQLLALADEARQSMHP-AEPGGRLRLGSMESTAASRLPALLASYHKACPRVALEVSTGT 126
Query 121 WKQLLLDVSQHKLDAAMV------AGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDL 174
L V +LD A+V AG +D L +++E +++I PA + + ++
Sbjct 127 SHALFDGVRARRLDCALVAAGPGWAGELDGSGLRGEPLFREELLMILPAEHPPVHDVAEV 186
Query 175 INKEIFMWTEGCPYRAALETWLKLKHISLPITSITNYATIIGCVSAGLGVSLIPKSIYAQ 234
+ + + GC YR E L L + + +Y I+ CV+AG V ++P+S+ Q
Sbjct 187 RLRTLAGFARGCTYRQLAEDSL---GTPLTVQEVGSYHAILACVAAGACVGVLPRSV-LQ 242
Query 235 YKNLPQLCSYEFDRLATIPVHFFWHQ 260
P L S LA + W +
Sbjct 243 LLGTPPLRSLP---LAEVDTWLVWRE 265
>Q44311 HTH-type transcriptional regulator SoxR [Arthrobacter
sp. (strain TE1826)]
Length=289
Score = 155 bits (391), Expect = 6e-49
Identities = 97/282 (34%), Positives = 157/282 (56%), Gaps = 13/282 (5%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ VVE G+++KA+ L+ V S +T RI++LEEEL + LF+R + + L G+ L Y
Sbjct 8 IFQKVVEYGSVSKAAKSLNYVQSYVTVRIQKLEEELQTELFHRSSRGMVLNSEGKTLLFY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
I+++ DE + + P+G L IG +E+ LP +L+ YH+ YP + + +ITG
Sbjct 68 SQNIISMVDEMIKVVQDCDNPAGSLEIGTVET--VNKLPSILSAYHKKYPKIDLSLITGV 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
+ L+ DV +KLD A V G + P + + E+++E +VLI+ E+L NK +
Sbjct 126 TEDLVDDVLNYKLDGAFVTGYYNHPQIIQYEVFEEELVLISNYDK---LPFEELKNKPLL 182
Query 181 MWTEGCPYRAALETWLKLK-HISLPITSITNYATIIGCVSAGLGVSLIPKSIYAQYKNLP 239
++ +GC YRA LE W++ + I+ I TI+G V AGLG+++IPKS +
Sbjct 183 VFKQGCSYRAKLEGWVRDEGEINAKIMEFGTMETILGSVIAGLGITIIPKS------TIS 236
Query 240 QLCSYEFDRLATIPVHFFWHQKILNHKARDAFLKLLTLEFLE 281
L + R+ IP + + H+A D FL +F+E
Sbjct 237 LLEAEGVVRIYEIPEKYSKITTVFIHRA-DTFLTNALQKFIE 277
>A0R8S0 HTH-type transcriptional regulator CzcR [Bacillus thuringiensis
(strain Al Hakam)]
Length=298
Score = 152 bits (383), Expect = 1e-47
Identities = 84/232 (36%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ+V + G+++ A+ +L+ V SN+T RIKQLE EL +PLFYR + + LT G L Y
Sbjct 18 IFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVY 77
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
HKIL DE K+ PSG L+IG +E+ ++ LP +L+ Y++ YP+V + + G
Sbjct 78 VHKILQDVDELKQVFLDSETPSGILKIGTVETVST--LPTILSSYYKSYPNVDLSLQAGL 135
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ +V H+LD A ++G I P + + ++ E ++L+ I E+ +
Sbjct 136 TEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHI---EEFTTTPLL 192
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP I TI+ V+ GLG++L+P+S
Sbjct 193 VFNQGCGYRSKLERWLKDEGL-LPKRIMEFNILETILNSVALGLGITLVPQS 243
Score = 16.9 bits (32), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (49%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
VS +P + + YK+ P + + A + +++L+H+ AF+
Sbjct 110 VSTLPTILSSYYKSYPNV---DLSLQAGLTEELI--REVLDHQLDGAFI 153
>Q6HPH4 HTH-type transcriptional regulator CzcR [Bacillus thuringiensis
subsp. konkukian (strain 97-27)]
Length=288
Score = 151 bits (381), Expect = 2e-47
Identities = 84/232 (36%), Positives = 139/232 (60%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ+V + G+++ A+ +L+ V SN+TTRIKQLE EL +PLFYR + + LT G L Y
Sbjct 8 IFQSVADQGSVSSAAKELNYVQSNVTTRIKQLENELKTPLFYRHKRGMTLTAEGRKMLVY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KIL DE K+ PSG L+IG +E+ ++ LP +L+ Y++ YP+V + + G
Sbjct 68 VNKILQDVDELKQVFLDSETPSGILKIGTVETVST--LPTILSSYYKSYPNVDLSLQAGL 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ +V H+LD A ++G I P + + ++ E ++L+ I E+ +
Sbjct 126 TEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHI---EEFTTTPLL 182
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP I TI+ V+ GLG++L+P+S
Sbjct 183 VFNQGCGYRSKLERWLKDEGL-LPKRIMEFNILETILNSVALGLGITLVPQS 233
Score = 16.9 bits (32), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (49%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
VS +P + + YK+ P + + A + +++L+H+ AF+
Sbjct 100 VSTLPTILSSYYKSYPNV---DLSLQAGLTEELI--REVLDHQLDGAFI 143
>Q63H01 HTH-type transcriptional regulator CzcR [Bacillus cereus
(strain ZK / E33L)]
Length=288
Score = 149 bits (376), Expect = 1e-46
Identities = 83/232 (36%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ+V + G+++ A+ +L+ V SN+T RIKQLE EL +PLFYR + + LT G L Y
Sbjct 8 IFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KIL DE K+ PSG L+IG +E+ ++ LP +L+ Y++ YP+V + + G
Sbjct 68 VNKILQDVDELKQVFLDSETPSGILKIGTVETVST--LPTILSSYYKSYPNVDLSLQAGL 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ +V H+LD A ++G I P + + ++ E ++L+ I E+ +
Sbjct 126 TEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHI---EEFTTTPLL 182
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP I TI+ V+ GLG++L+P+S
Sbjct 183 VFNQGCGYRSKLERWLKDEGL-LPKRIMEFNILETILNSVALGLGITLVPQS 233
Score = 16.9 bits (32), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (49%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
VS +P + + YK+ P + + A + +++L+H+ AF+
Sbjct 100 VSTLPTILSSYYKSYPNV---DLSLQAGLTEELI--REVLDHQLDGAFI 143
>Q73EY2 HTH-type transcriptional regulator CzcR [Bacillus cereus
(strain ATCC 10987 / NRS 248)]
Length=288
Score = 149 bits (376), Expect = 1e-46
Identities = 83/232 (36%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ+V + G+++ A+ +L+ V SN+T RIKQLE EL +PLFYR + + LT G L Y
Sbjct 8 IFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KIL DE K+ PSG L+IG +E+ ++ LP +L+ Y++ YP+V + + G
Sbjct 68 VNKILQDVDELKQVFLDSETPSGILKIGTVETVST--LPTILSSYYKSYPNVDLSLQAGL 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ +V H+LD A ++G I P + + ++ E ++L+ I E+ +
Sbjct 126 TEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHI---EEFTTTPLL 182
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP I TI+ V+ GLG++L+P+S
Sbjct 183 VFNQGCGYRSKLERWLKDEGL-LPKRIMEFNILETILNSVALGLGITLVPQS 233
Score = 16.9 bits (32), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (49%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
VS +P + + YK+ P + + A + +++L+H+ AF+
Sbjct 100 VSTLPTILSSYYKSYPNV---DLSLQAGLTEELI--REVLDHQLDGAFI 143
>Q81VJ1 HTH-type transcriptional regulator CzcR [Bacillus anthracis]
Length=288
Score = 148 bits (374), Expect = 2e-46
Identities = 82/232 (35%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ+V + G+++ A+ +L+ V SN+T RIKQLE EL +PLFYR + + LT G L Y
Sbjct 8 IFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KIL DE K+ PSG L+IG +E+ ++ LP +L+ Y++ YP+V + + G
Sbjct 68 VNKILQDVDELKQVFLDSETPSGILKIGTVETVST--LPTILSSYYKSYPNVDLSLQAGL 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ +V H+LD A ++G I P + + ++ E ++L+ I E+ +
Sbjct 126 TEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKTFHI---EEFTTTPLL 182
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP I T++ V+ GLG++L+P+S
Sbjct 183 VFNQGCGYRSKLERWLKDEGL-LPKRIMEFNILETLLNSVALGLGITLVPQS 233
Score = 16.9 bits (32), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (49%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
VS +P + + YK+ P + + A + +++L+H+ AF+
Sbjct 100 VSTLPTILSSYYKSYPNV---DLSLQAGLTEELI--REVLDHQLDGAFI 143
>O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis
(strain 168)]
Length=285
Score = 143 bits (360), Expect = 2e-44
Identities = 78/231 (34%), Positives = 130/231 (56%), Gaps = 5/231 (2%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+FQ V G++ KA+ L+ V SN+T R+ LEE+L LF+R + +KLT +GE L+Y
Sbjct 8 IFQAVAREGSITKAAQMLNYVQSNVTARVHNLEEDLNIRLFHRTNRGMKLTAAGENLLQY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
++L+L D+A++S P GPLRIG++E+ A THLP A + + +P+V + + T
Sbjct 68 ADQVLSLLDQAEKSTRMSRQPKGPLRIGSLETMAVTHLPEHAASFLRRFPEVDLSVNTAD 127
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
L+ V HK+D A V G ++ + ++ + + +VLI+ ED++ + +
Sbjct 128 THHLIQQVLDHKVDGAFVYGPVEHAAVRQLHVSHDELVLISSRE----GTAEDMLQQPML 183
Query 181 MWTEGCPYRAALETWLKLKHI-SLPITSITNYATIIGCVSAGLGVSLIPKS 230
+ GC +R ++ L+ I + I II VSAG+G +L+PKS
Sbjct 184 FFGAGCSHRDRVKRLLEEAGIHNQKIIEFGTLEAIIKGVSAGMGTALLPKS 234
Score = 18.1 bits (35), Expect = 4.2
Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 260 QKILNHKARDAFL 272
Q++L+HK AF+
Sbjct 133 QQVLDHKVDGAFV 145
>P71025 HTH-type transcriptional regulator CzcR [Bacillus subtilis
(strain 168)]
Length=288
Score = 137 bits (345), Expect = 4e-42
Identities = 79/232 (34%), Positives = 132/232 (57%), Gaps = 8/232 (3%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+F+ V ++ A+ +L+ V SN+T RIKQLE EL +PLF R K + L+P G +EY
Sbjct 8 IFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPEGRKMIEY 67
Query 61 CHKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+KIL +E ++ PSG L+IG +E+ LP ++A Y++ YP+V + + G
Sbjct 68 VNKILKDVEELEQVFLDTEIPSGILKIGTVETVRI--LPTIIASYYKKYPNVDLSLQAGL 125
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDLINKEIF 180
++L+ V H+LD A ++G + L + ++Y E + L+ + N ED I
Sbjct 126 TEELIKKVMNHELDGAFISGPLKHSILEQYDVYTEKLTLV---TSNKTFNIEDFSTTPIL 182
Query 181 MWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIPKS 230
++ +GC YR+ LE WLK + + LP + TI+ V+ GLG++++P+S
Sbjct 183 VFNQGCGYRSRLEQWLKDEGV-LPNRMMEFNILETILNSVALGLGITVVPES 233
Score = 19.2 bits (38), Expect = 1.8
Identities = 12/49 (24%), Positives = 23/49 (47%), Gaps = 5/49 (10%)
Query 224 VSLIPKSIYAQYKNLPQLCSYEFDRLATIPVHFFWHQKILNHKARDAFL 272
V ++P I + YK P + + A + +K++NH+ AF+
Sbjct 100 VRILPTIIASYYKKYPNV---DLSLQAGLTEELI--KKVMNHELDGAFI 143
>P20668 Transcriptional dual regulator GltC [Bacillus subtilis
(strain 168)]
Length=300
Score = 100 bits (249), Expect = 4e-28
Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 7/240 (3%)
Query 2 FQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEYC 61
F V E +++A+ LH S I+ +I LEEEL LF REG+ +KLTP G+ FL +
Sbjct 9 FMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPIGKEFLIHV 68
Query 62 HKILALCDEAKRSIHPDAPP-SGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+ D AK I P G ++IG S AS LP +++ + + YP V + G+
Sbjct 69 KTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHVEFLLRQGS 128
Query 121 WKQLLLDVSQHKLDAAMVAGA-IDFPCLNKVEIYQENMVLIAPASMGIIRNQE----DLI 175
+K L+ V +D A++ +F + ++ E + + P + + + + DL
Sbjct 129 YKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAKQKTVHLIDLR 188
Query 176 NKEIFMWTEGCPYR-AALETWLKLKHISLPITSITNYATIIGCVSAGLGVSLIPKSIYAQ 234
N + ++ EG R A++T + L T + I G VSAG+GV+L+P+S +A+
Sbjct 189 NDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGVTLLPESTFAE 248
>P05827 HTH-type transcriptional regulator IlvY [Escherichia coli
(strain K12)]
Length=297
Score = 99.4 bits (246), Expect = 1e-27
Identities = 67/243 (28%), Positives = 121/243 (50%), Gaps = 18/243 (7%)
Query 2 FQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEYC 61
F + E +++ +H PS ++ +I++LEE+LG PLF R+ +T+ LT +GE +
Sbjct 9 FLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGEELRVFA 68
Query 62 HKILALCDEAKRSIHPDAPP-SGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+ L + + +I P SG L I ++A +HLP +L ++ +P V I++ TG
Sbjct 69 QQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTGD 128
Query 121 WKQLLLDVSQHKLDAAM------VAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDL 174
+ V + D A+ + GA+ F L + + VLIAPA +RNQ +
Sbjct 129 AADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAV-----VLIAPALPCPVRNQVSV 183
Query 175 INKE----IFMWTEGCPYRAALETWLKLKHISLPI--TSITNYATIIGCVSAGLGVSLIP 228
+ F+ + P R +E W + IS P+ ++ + ++ V+ G GV+L+P
Sbjct 184 EKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVALLP 243
Query 229 KSI 231
+ +
Sbjct 244 EVV 246
>P0A2Q2 HTH-type transcriptional activator IlvY [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=295
Score = 97.4 bits (241), Expect = 5e-27
Identities = 76/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%)
Query 2 FQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEYC 61
F + E +++ +H PS ++ +I++LEE+LG PLF R+ +T+ LT +GE +
Sbjct 9 FLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGEELRVFA 68
Query 62 HKILALCDEAKRSIHPDAPP-SGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+ L + + ++ P SG L I ++A +HLP +L ++ +P V I++ TG
Sbjct 69 QQTLLQYQQLRHTLDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTGD 128
Query 121 WKQLLLDVSQHKLDAAMVA------GAIDFPCLNKVEIYQENMVLIAPASMGIIRNQEDL 174
+ V + D A+ GA+ F L + + VLIAPA +RNQ +
Sbjct 129 AADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAV-----VLIAPALPCPVRNQVSV 183
Query 175 INKEI----FMWTEGCPYRAALETWLKLKHISLP--ITSITNYATIIGCVSAGLGVSLIP 228
+ F+ + P R +E W + IS P ++ + ++ V+ G GV+L+P
Sbjct 184 DKPDWSTVPFIMADQGPVRRRIELWFRRHKISNPQIYATVGGHEAMVSMVALGCGVALLP 243
Query 229 KSIYAQYKNLPQ------LCSYEFDRLATIPVHFFWHQKILNHKARDAFLKLL 275
+ + +N P+ + D + +K L+ DAF K+L
Sbjct 244 EVVL---ENSPEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIDAFWKIL 293
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 84.7 bits (208), Expect = 2e-22
Identities = 47/160 (29%), Positives = 86/160 (54%), Gaps = 1/160 (1%)
Query 2 FQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEYC 61
F V E G+ +A+ LH ++ +I+QLEE LG PLF R G+T++LT +GE++ +Y
Sbjct 9 FLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWRQYA 68
Query 62 HKILALCDEAKRSIHPDAP-PSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGT 120
+ L KR+IH A G LRI + S + L+A ++ YP +++Q+ +
Sbjct 69 SRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMS 128
Query 121 WKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLI 160
+++ + + +LD + + P L + + E++ L+
Sbjct 129 QEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALV 168
>O68014 HTH-type transcriptional regulator BenM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=304
Score = 77.8 bits (190), Expect = 7e-20
Identities = 61/238 (26%), Positives = 108/238 (45%), Gaps = 9/238 (4%)
Query 2 FQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEYC 61
F VVE + KA+ +L ++ +I+ LEEELG L R + +K TP G F +Y
Sbjct 9 FVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYA 68
Query 62 HKILALCDEAKRSIHPDAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITGTW 121
K+L+ D+ A +RIG + S LPR++ Y Q +P++ I++
Sbjct 69 IKLLSNVDQMVSMTKRIASVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGT 128
Query 122 KQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQE------DLI 175
K + + ++DA I P + + + E +++ AS + + ++ DLI
Sbjct 129 KAQTEALKEGRIDAGFGRLKISDPAIKRTLLRNERLMVAVHASHPLNQMKDKGVHLNDLI 188
Query 176 NKEIFMWTEGCPYRAALETWLKLKHISLPITSITNYATI---IGCVSAGLGVSLIPKS 230
+++I ++ + L T I + +G V+AG G+SL+P S
Sbjct 189 DEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAS 246
>Q55459 HTH-type transcriptional activator CmpR [Synechocystis
sp. (strain PCC 6803 / Kazusa)]
Length=304
Score = 77.4 bits (189), Expect = 1e-19
Identities = 57/239 (24%), Positives = 115/239 (48%), Gaps = 9/239 (4%)
Query 1 MFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGSPLFYREGKTLKLTPSGEIFLEY 60
+F + G+ KA+ +L ++ ++KQL + +G PL+ + G+ + LT +G+ L+
Sbjct 11 VFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIYLTEAGQAVLDA 70
Query 61 CHKILALCDEAKRSIHP-DAPPSGPLRIGAIESSASTHLPRLLAQYHQHYPDVSIQIITG 119
I + D+ + I G LR+ I ++ +PRLL ++ Q YP +SI + G
Sbjct 71 SKNITSCLDQLQEVIADLQGLKKGNLRLATI-TTGKYFVPRLLGEFRQQYPGISISLQIG 129
Query 120 TWKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASMGIIRNQ----EDLI 175
+Q+L ++ + D + +N + +V+IA +++ + E L+
Sbjct 130 NRQQILERLANNLDDLYFLGKPPSNLDINIRHFLENPLVVIASRQHPLVKEKKISLERLV 189
Query 176 NKEIFMWTEGCPYRAALETWLKLKHISLPI-TSITNYATIIGCVSAGLGVSLIPKSIYA 233
N+ + M G R A+E + + + + I++ I V GLG+S++ S+Y+
Sbjct 190 NEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGISIL--SLYS 246
Lambda K H a alpha
0.324 0.138 0.424 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1121627
Database: c8c3f4fc1a72703b8086ffb6e3fc33e7.SwissProt.fasta
Posted date: Jun 2, 2024 1:33 AM
Number of letters in database: 5,567
Number of sequences in database: 19
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
