BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2c4fb133d7baf58779bf45097a34aabe.SwissProt.fasta
5 sequences; 1,436 total letters
Query= ACIAD0008
Length=337
Score E
Sequences producing significant alignments: (Bits) Value
C7F8K6 Probable solute-binding protein AdeT1 [Acinetobacter bauma... 305 4e-107
C7F8K7 Probable solute-binding protein AdeT2 [Acinetobacter bauma... 135 4e-42
P43797 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus inf... 38.1 6e-07
A5UG62 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus inf... 37.0 1e-06
A5UAN5 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus inf... 36.2 2e-06
>C7F8K6 Probable solute-binding protein AdeT1 [Acinetobacter baumannii]
Length=304
Score = 305 bits (780), Expect = 4e-107
Identities = 147/308 (48%), Positives = 212/308 (69%), Gaps = 4/308 (1%)
Query 29 VFDLLGKSGESYKMMEEWALAAKGWGADINLVPRQDEAVADNDFKAGKCDAVAMTAMRAR 88
+FD +GKSG+++ + +++AL AK WGAD++L DE VA D K GKCD ++ +R R
Sbjct 1 MFDPIGKSGDAFALAKDYALEAKNWGADLSLKAYVDERVAAEDLKVGKCDGAIISGLRGR 60
Query 89 PYNKFAGSIDSLGGVPNNQIAQRAISYVLDARNAAKMTTNLGGKKYEVAGISPLGSAFIF 148
+NK+ GS+D++G + N + A A +L + AAK N+ YE+AG+ +G A++F
Sbjct 61 QFNKYTGSLDAVGALTNMKTAINAYK-LLSSPMAAK---NMVVGPYEIAGLGTIGPAYLF 116
Query 149 VRDKNINSIEKAAGKKFAVLGYDDAQKIMVQRVGAQAVLSDISNFAAKFNNGQVDIVGAP 208
V D++IN++ KAAGKK V YD+AQ +VQ VG QAV D++N AKFNN ++DIV AP
Sbjct 117 VNDRSINTLAKAAGKKIGVFKYDEAQPKLVQHVGGQAVSVDVTNAGAKFNNHEIDIVPAP 176
Query 209 AYAYKPLELHKGLGANGVMWNFPVLQVTADLVIRPDQFPQGFGQKSRDWFVKRLPKNFAM 268
A+KP EL+KGLG G + FP+ Q++AD +IR DQFP GFGQKSR W +L + F +
Sbjct 177 IVAFKPFELYKGLGEKGAIVRFPLTQISADFIIRKDQFPAGFGQKSRTWVASQLNRTFGI 236
Query 269 INRLEAEIPAKYKMNLTAEDKLKYQKLLRDGRIDLTKRGIYDPEMMSVLKKARCSVDKAN 328
I + E++IP+KY M++ ++L Y K++R+ RI LTK GIYDP+MM+ LKK RC + +N
Sbjct 237 IAKYESDIPSKYWMDIPKNEQLNYMKMMREARIQLTKAGIYDPKMMNFLKKVRCKENPSN 296
Query 329 FECAMPGE 336
FECA+ E
Sbjct 297 FECALNDE 304
>C7F8K7 Probable solute-binding protein AdeT2 [Acinetobacter baumannii]
Length=238
Score = 135 bits (341), Expect = 4e-42
Identities = 74/239 (31%), Positives = 124/239 (52%), Gaps = 4/239 (2%)
Query 95 GSIDSLGGVPNNQIAQRAISYVLDARNAAKMTTNLGGKKYEVAGISPLGSAFIFVRDKNI 154
GS +G +PNN+ A+ +L N + L K YE G+ P+G+A + ++ K I
Sbjct 2 GSTSGIGLIPNNRTARN----LLQLLNHPTIEKRLINKDYEAVGMIPVGTANMVMKTKKI 57
Query 155 NSIEKAAGKKFAVLGYDDAQKIMVQRVGAQAVLSDISNFAAKFNNGQVDIVGAPAYAYKP 214
+ + + G++ VL + Q+ +V+ VGAQ V D+SN A+F ++DI+ AP Y P
Sbjct 58 SKVAQLRGQRIGVLANNPPQQALVRSVGAQPVYVDLSNAIAQFQQNKIDIMPAPVYGLLP 117
Query 215 LELHKGLGANGVMWNFPVLQVTADLVIRPDQFPQGFGQKSRDWFVKRLPKNFAMINRLEA 274
L K G + + NFP+ +++I+P +P FG+K R WFV+ + E
Sbjct 118 YNLQKDFGPDTQVINFPLAYFGVNIIIKPQAYPANFGRKIRAWFVQNSQLLTNRAIQWEN 177
Query 275 EIPAKYKMNLTAEDKLKYQKLLRDGRIDLTKRGIYDPEMMSVLKKARCSVDKANFECAM 333
+PA Y ++++ +K Y ++ R + G YD + ++K+ RC D FEC M
Sbjct 178 HLPAYYWVDVSFYEKQSYDIMVAKIRNQYVRSGYYDAYFVELMKRLRCIDDPRYFECPM 236
>P43797 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=298
Score = 38.1 bits (87), Expect = 6e-07
Identities = 28/85 (33%), Positives = 42/85 (49%), Gaps = 4/85 (5%)
Query 113 ISYVLDARNAAKMTTNLGGKKYEVAGISPLGSAFIFVRD-KNINSIEKAAGKKFAVLGYD 171
I Y + +R + M + E+ I + A RD I I++ AGK F VL D
Sbjct 137 ILYNVPSRTGSDMKPETVARLAEIENIVGIKEA---TRDVSRIVKIKQLAGKNFIVLSGD 193
Query 172 DAQKIMVQRVGAQAVLSDISNFAAK 196
DA + ++GA+ V+S +N AAK
Sbjct 194 DATGLEAIKLGAEGVISVTNNIAAK 218
Score = 15.4 bits (28), Expect = 9.5
Identities = 14/60 (23%), Positives = 25/60 (42%), Gaps = 5/60 (8%)
Query 12 SVCGLSATAQAAKVDVCVFDLLGK-----SGESYKMMEEWALAAKGWGADINLVPRQDEA 66
++ G+ + V + L GK SG+ +E L A+G + N + +D A
Sbjct 162 NIVGIKEATRDVSRIVKIKQLAGKNFIVLSGDDATGLEAIKLGAEGVISVTNNIAAKDMA 221
>A5UG62 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus
influenzae (strain PittGG)]
Length=298
Score = 37.0 bits (84), Expect = 1e-06
Identities = 27/84 (32%), Positives = 41/84 (49%), Gaps = 2/84 (2%)
Query 113 ISYVLDARNAAKMTTNLGGKKYEVAGISPLGSAFIFVRDKNINSIEKAAGKKFAVLGYDD 172
I Y + +R + M + E+ I + A V I I++ AGK F VL DD
Sbjct 137 ILYNVPSRTGSDMKPETVARLAEIENIVGIKEATGDV--SRIVKIKQLAGKNFIVLSGDD 194
Query 173 AQKIMVQRVGAQAVLSDISNFAAK 196
A + ++GA+ V+S +N AAK
Sbjct 195 ATGLEAIKLGAEGVISVTNNIAAK 218
Score = 15.4 bits (28), Expect = 9.5
Identities = 15/54 (28%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query 18 ATAQAAKVDVCVFDLLGK-----SGESYKMMEEWALAAKGWGADINLVPRQDEA 66
AT +++ V + L GK SG+ +E L A+G + N + +D A
Sbjct 169 ATGDVSRI-VKIKQLAGKNFIVLSGDDATGLEAIKLGAEGVISVTNNIAAKDMA 221
>A5UAN5 4-hydroxy-tetrahydrodipicolinate synthase [Haemophilus
influenzae (strain PittEE)]
Length=298
Score = 36.2 bits (82), Expect = 2e-06
Identities = 19/43 (44%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
Query 154 INSIEKAAGKKFAVLGYDDAQKIMVQRVGAQAVLSDISNFAAK 196
I I++ AGK F VL DDA + ++GA+ V+S +N AAK
Sbjct 176 IVKIKQLAGKNFIVLSGDDATGLEAIKLGAEGVISVTNNIAAK 218
Score = 15.4 bits (28), Expect = 9.5
Identities = 15/54 (28%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query 18 ATAQAAKVDVCVFDLLGK-----SGESYKMMEEWALAAKGWGADINLVPRQDEA 66
AT +++ V + L GK SG+ +E L A+G + N + +D A
Sbjct 169 ATGDVSRI-VKIKQLAGKNFIVLSGDDATGLEAIKLGAEGVISVTNNIAAKDMA 221
Lambda K H a alpha
0.321 0.135 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 372554
Database: 2c4fb133d7baf58779bf45097a34aabe.SwissProt.fasta
Posted date: May 9, 2024 1:03 AM
Number of letters in database: 1,436
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
