Comparative Genomics

ACIAD0051 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5ef3a9628c4ed9e307637d3af04b1e08.TrEMBL.fasta
           9 sequences; 1,340 total letters



Query= ACIAD0051

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FFX4 PAAR domain-containing protein [Acinetobacter baylyi (stra...  299     3e-110
A0A7G2SER3 PAAR domain-containing protein [Acinetobacter sp]          296     6e-109
A0A1P8ENB1 PAAR domain-containing protein [Acinetobacter soli]        270     1e-98 
N8WY06 Uncharacterized protein [Acinetobacter guillouiae NIPH 991]    226     3e-81 
A0A0Q7FNF4 PAAR motif protein [Acinetobacter sp. Root1280]            221     1e-79 
A0A6A1RR25 PAAR domain-containing protein [Acinetobacter guillouiae]  220     6e-79 
A0A241W1C2 PAAR domain-containing protein [Acinetobacter sp. ANC ...  219     2e-78 
A0A3A8EWT0 PAAR domain-containing protein [Acinetobacter guerrae]     212     1e-75 
A0A3A8ESP7 PAAR domain-containing protein [Acinetobacter rongchen...  206     2e-73 


>Q6FFX4 PAAR domain-containing protein [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=151

 Score = 299 bits (766),  Expect = 3e-110
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGL  60
            MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGL
Sbjct  1    MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGL  60

Query  61   VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI  120
            VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI
Sbjct  61   VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI  120

Query  121  IDSPNRTVAINIFKGETLPEGFLIPEGTDHG  151
            IDSPNRTVAINIFKGETLPEGFLIPEGTDHG
Sbjct  121  IDSPNRTVAINIFKGETLPEGFLIPEGTDHG  151


>A0A7G2SER3 PAAR domain-containing protein [Acinetobacter sp]
Length=151

 Score = 296 bits (757),  Expect = 6e-109
 Identities = 150/151 (99%), Positives = 150/151 (99%), Gaps = 0/151 (0%)

Query  1    MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGL  60
            MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMY LAVNGSKTKQGGL
Sbjct  1    MNSYMTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYSLAVNGSKTKQGGL  60

Query  61   VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI  120
            VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI
Sbjct  61   VKASATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEI  120

Query  121  IDSPNRTVAINIFKGETLPEGFLIPEGTDHG  151
            IDSPNRTVAINIFKGETLPEGFLIPEGTDHG
Sbjct  121  IDSPNRTVAINIFKGETLPEGFLIPEGTDHG  151


>A0A1P8ENB1 PAAR domain-containing protein [Acinetobacter soli]
Length=147

 Score = 270 bits (689),  Expect = 1e-98
 Identities = 135/147 (92%), Positives = 140/147 (95%), Gaps = 0/147 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            M SPIFLHELPIEQLQQMSQEDIEQTLKAE+LYFQHRPK MYYLAVNGSKTKQGGLVKAS
Sbjct  1    MASPIFLHELPIEQLQQMSQEDIEQTLKAERLYFQHRPKTMYYLAVNGSKTKQGGLVKAS  60

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            ATQGKIG LSIARIGD+VIYADGT+AKI+SGAGKVCIVEGLSAALVGSQLDNGDEI DSP
Sbjct  61   ATQGKIGGLSIARIGDEVIYADGTVAKIVSGAGKVCIVEGLSAALVGSQLDNGDEIEDSP  120

Query  125  NRTVAINIFKGETLPEGFLIPEGTDHG  151
            N TVAINIFKGE LP+GFLIPEG DHG
Sbjct  121  NCTVAINIFKGEPLPDGFLIPEGVDHG  147


>N8WY06 Uncharacterized protein [Acinetobacter guillouiae NIPH 
991]
Length=147

 Score = 226 bits (575),  Expect = 3e-81
 Identities = 111/147 (76%), Positives = 127/147 (86%), Gaps = 0/147 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            MT P FLHELPIEQL+QMSQEDI+QT+KAEQLYF+HRPK +YYLAVNG+KTK GGLVKAS
Sbjct  1    MTKPKFLHELPIEQLKQMSQEDIKQTIKAEQLYFRHRPKKIYYLAVNGAKTKNGGLVKAS  60

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            A Q +IG L IA +GDDVIYADGTI+KIISGAGK C++ G SAALVGS L+NGDEI+DSP
Sbjct  61   ALQSRIGGLPIALVGDDVIYADGTISKIISGAGKGCLINGHSAALVGSSLENGDEIVDSP  120

Query  125  NRTVAINIFKGETLPEGFLIPEGTDHG  151
            N +VAINIF G+  PEGFL  EG +HG
Sbjct  121  NISVAINIFIGDKTPEGFLCQEGVNHG  147


>A0A0Q7FNF4 PAAR motif protein [Acinetobacter sp. Root1280]
Length=147

 Score = 221 bits (564),  Expect = 1e-79
 Identities = 107/147 (73%), Positives = 125/147 (85%), Gaps = 0/147 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            MT P FLHELPIEQL+QMSQEDI+QT+KAEQLYF+HRPK +YYLAVNG+KTK GGLVKAS
Sbjct  1    MTKPNFLHELPIEQLKQMSQEDIKQTIKAEQLYFRHRPKKIYYLAVNGAKTKNGGLVKAS  60

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            A + +IG + IA +GDDVIYADG I+KIISGAGK C++ G S ALVGS L+NGDEI+DSP
Sbjct  61   ALESRIGGMPIALVGDDVIYADGEISKIISGAGKGCLINGQSVALVGSHLENGDEIVDSP  120

Query  125  NRTVAINIFKGETLPEGFLIPEGTDHG  151
            N +VAINIF G+  PEGFL  EG +HG
Sbjct  121  NNSVAINIFIGDKAPEGFLCQEGVNHG  147


>A0A6A1RR25 PAAR domain-containing protein [Acinetobacter guillouiae]
Length=147

 Score = 220 bits (560),  Expect = 6e-79
 Identities = 106/147 (72%), Positives = 125/147 (85%), Gaps = 0/147 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            MT P FLHELPIEQL+QMSQEDI+QT+KAEQLYF+HRPK +YYLAVNG+KTK GGLVKAS
Sbjct  1    MTKPNFLHELPIEQLKQMSQEDIKQTIKAEQLYFRHRPKKIYYLAVNGAKTKNGGLVKAS  60

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            A + +IG + IA +GDDVIYADG I+KIISGAGK C++ G S ALVGS L+NGD+I+DSP
Sbjct  61   ALESRIGGMPIALVGDDVIYADGEISKIISGAGKGCLINGQSVALVGSHLENGDKIVDSP  120

Query  125  NRTVAINIFKGETLPEGFLIPEGTDHG  151
            N +VAINIF G+  PEGFL  EG +HG
Sbjct  121  NNSVAINIFIGDKAPEGFLCQEGVNHG  147


>A0A241W1C2 PAAR domain-containing protein [Acinetobacter sp. 
ANC 4558]
Length=148

 Score = 219 bits (557),  Expect = 2e-78
 Identities = 108/142 (76%), Positives = 124/142 (87%), Gaps = 0/142 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            MTSPIFLHELPIEQL+QMSQEDI+QT+KAEQLYFQHRPK +YYLAVNG+KTK  GLVKAS
Sbjct  1    MTSPIFLHELPIEQLEQMSQEDIDQTIKAEQLYFQHRPKTIYYLAVNGAKTKNDGLVKAS  60

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            ATQ  IG L+IAR+GDDVIYADGT +KIISGAG    V+GLS ALVGS+L+NGD+I+DSP
Sbjct  61   ATQHTIGGLAIARVGDDVIYADGTTSKIISGAGTAYTVDGLSVALVGSRLENGDKIVDSP  120

Query  125  NRTVAINIFKGETLPEGFLIPE  146
            N  VAINIFKG+   +GFL+ E
Sbjct  121  NNAVAINIFKGDKALQGFLVSE  142


>A0A3A8EWT0 PAAR domain-containing protein [Acinetobacter guerrae]
Length=152

 Score = 212 bits (539),  Expect = 1e-75
 Identities = 104/148 (70%), Positives = 127/148 (86%), Gaps = 1/148 (1%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            M+S IFL++LP++Q++QMS EDI+QT+KAEQLYFQHRPK +Y+LAVNG+KTK GGLVKAS
Sbjct  5    MSSLIFLNDLPVKQIKQMSPEDIDQTIKAEQLYFQHRPKTLYHLAVNGAKTKNGGLVKAS  64

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
            A   KI  LSIA +GDDV+Y++GT +KIISGAG  CIVEG S ALVGS L+NGDEIIDSP
Sbjct  65   AVACKISGLSIALVGDDVLYSNGTTSKIISGAGNACIVEGKSVALVGSHLENGDEIIDSP  124

Query  125  NRTVAINIFKGETLPEGFLI-PEGTDHG  151
            N++VAINIFKG+  PEGFL+  EG +HG
Sbjct  125  NKSVAINIFKGDKAPEGFLVKQEGVNHG  152


>A0A3A8ESP7 PAAR domain-containing protein [Acinetobacter rongchengensis]
Length=150

 Score = 206 bits (524),  Expect = 2e-73
 Identities = 100/139 (72%), Positives = 118/139 (85%), Gaps = 0/139 (0%)

Query  5    MTSPIFLHELPIEQLQQMSQEDIEQTLKAEQLYFQHRPKAMYYLAVNGSKTKQGGLVKAS  64
            MT+P FLHELPIEQLQQMSQEDIEQTLKAEQLYF H+P   YYLAVNG+K+K GGLVKAS
Sbjct  4    MTTPKFLHELPIEQLQQMSQEDIEQTLKAEQLYFDHKPHGTYYLAVNGAKSKNGGLVKAS  63

Query  65   ATQGKIGDLSIARIGDDVIYADGTIAKIISGAGKVCIVEGLSAALVGSQLDNGDEIIDSP  124
              Q KI  LS+AR+GDDVIYADGT ++IISGAGK C+++G   ALVGS+L+NGDEI++SP
Sbjct  64   FDQCKIEGLSVARVGDDVIYADGTSSRIISGAGKSCVLDGKPVALVGSRLENGDEIVESP  123

Query  125  NRTVAINIFKGETLPEGFL  143
            N  VA+ IFK + +PEGFL
Sbjct  124  NNVVALRIFKDQQIPEGFL  142



Lambda      K        H        a         alpha
   0.319    0.138    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 130540


  Database: 5ef3a9628c4ed9e307637d3af04b1e08.TrEMBL.fasta
    Posted date:  May 13, 2024  9:24 PM
  Number of letters in database: 1,340
  Number of sequences in database:  9



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40