BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4c35210afc7197591256aa9fbed59d40.SwissProt.fasta
1 sequences; 1,427 total letters
Query= ACIAD0052
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
P0DUH5 Double-stranded DNA deaminase toxin A [Burkholderia cenoce... 33.9 6e-06
>P0DUH5 Double-stranded DNA deaminase toxin A [Burkholderia cenocepacia
(strain H111)]
Length=1427
Score = 33.9 bits (76), Expect = 6e-06
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 20/85 (24%)
Query 26 SQQGNLFVRAGD--------------GHFCPKCKCWSTVIKSHDHVIMDGKPVAYAGDKL 71
SQ GN+ + D G C K V + ++ ++G+P A DK+
Sbjct 73 SQSGNIITGSPDVYVNSLSAAYATLSGVACSKHNPIPLVAQGSTNIFINGRPAARKDDKI 132
Query 72 TCGATIQPQQSHVVGDSGSYYNGST 96
TCGATI G ++++G T
Sbjct 133 TCGATIGD------GSHDTFFHGGT 151
Score = 18.5 bits (36), Expect = 0.54
Identities = 6/19 (32%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 146 SNGKTLRFETKKQSQVTEF 164
++G+T + QSQ+ E+
Sbjct 497 ADGRTAHWRFDAQSQIVEY 515
Score = 17.7 bits (34), Expect = 0.95
Identities = 7/19 (37%), Positives = 11/19 (58%), Gaps = 0/19 (0%)
Query 145 DSNGKTLRFETKKQSQVTE 163
D G+ +FE + +VTE
Sbjct 362 DQAGQWYQFERDSRGRVTE 380
Score = 15.8 bits (29), Expect = 3.8
Identities = 13/43 (30%), Positives = 17/43 (40%), Gaps = 8/43 (19%)
Query 131 YRLKVDGNVIEGTLD--------SNGKTLRFETKKQSQVTEFE 165
YR V+G + E D S G L ET+ + FE
Sbjct 738 YRYDVEGRLRELQQDHARYTFTYSAGGRLLTETRPDGILRRFE 780
Score = 15.0 bits (27), Expect = 6.7
Identities = 8/22 (36%), Positives = 14/22 (64%), Gaps = 2/22 (9%)
Query 84 VVGDSGSYYNGSTNFSQNLLDS 105
+V + GS NGS ++ + LD+
Sbjct 870 LVAEHGS--NGSVIYTLDELDN 889
Lambda K H a alpha
0.320 0.137 0.413 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 207557
Database: 4c35210afc7197591256aa9fbed59d40.SwissProt.fasta
Posted date: May 10, 2024 6:59 AM
Number of letters in database: 1,427
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40