Comparative Genomics

ACIAD0059 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9301f97dee7879dbad2296ebcf59af69.TrEMBL.fasta
           14 sequences; 3,710 total letters



Query= ACIAD0059

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

R9AQ93 Transposase DDE domain-containing protein [Acinetobacter t...  96.3    1e-29
D0S930 Transposase DDE domain-containing protein [Acinetobacter j...  91.3    2e-29
R9AMA1 Transposase DDE domain-containing protein [Acinetobacter t...  95.1    3e-29
R9AJY8 Transposase DDE domain-containing protein [Acinetobacter t...  90.5    4e-29
A0A2L0HRV6 IS982 family transposase [Acinetobacter sp. ACNIH2]        94.7    4e-29
A0A7T7WGW7 IS982 family transposase [Acinetobacter variabilis]        94.0    8e-29
A0A7T7WFT2 IS982 family transposase [Acinetobacter variabilis]        94.0    8e-29
N9N2S5 Transposase DDE domain-containing protein [Acinetobacter m...  94.0    8e-29
A0A0M3AGB0 Transposase [Acinetobacter sp. AG1]                        94.0    8e-29
A0A7T7WL75 IS982 family transposase [Acinetobacter variabilis]        93.6    1e-28
A0A7T7WL92 IS982 family transposase [Acinetobacter variabilis]        93.6    1e-28
I4ZRH8 Transposase IS982 [Acinetobacter sp. HA]                       93.6    1e-28
A0A2S1FB14 IS982 family transposase [Acinetobacter schindleri]        93.6    1e-28
A4KV95 IS982-like element ISAba4 family transposase [Acinetobacte...  58.5    1e-15


>R9AQ93 Transposase DDE domain-containing protein [Acinetobacter 
tandoii DSM 14970 = CIP 107469]
Length=301

 Score = 96.3 bits (238),  Expect = 1e-29
 Identities = 45/57 (79%), Positives = 52/57 (91%), Gaps = 0/57 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTT  60
            +ELKSRL++Q +DL+TYH KNMKSIQL   D+YHLKQRNKIETLFSLLKGTYNL+TT
Sbjct  209  QELKSRLRVQGVDLITYHRKNMKSIQLLKADEYHLKQRNKIETLFSLLKGTYNLVTT  265


>D0S930 Transposase DDE domain-containing protein [Acinetobacter 
johnsonii SH046]
Length=113

 Score = 91.3 bits (225),  Expect = 2e-29
 Identities = 43/58 (74%), Positives = 51/58 (88%), Gaps = 0/58 (0%)

Query  4   EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
           +ELKSRLK Q IDL+TYH KNM+S+QL   D+YHLKQRNKIETLFSLLKG YNL+T++
Sbjct  21  QELKSRLKSQGIDLITYHRKNMQSVQLCTSDEYHLKQRNKIETLFSLLKGQYNLVTSK  78


>R9AMA1 Transposase DDE domain-containing protein [Acinetobacter 
tandoii DSM 14970 = CIP 107469]
Length=289

 Score = 95.1 bits (235),  Expect = 3e-29
 Identities = 47/56 (84%), Positives = 50/56 (89%), Gaps = 0/56 (0%)

Query  5    ELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTT  60
            ELKSRLK Q IDL+TYH KNMKSIQL   D+YHLKQRNKIETLFSLLKGTYNL+TT
Sbjct  198  ELKSRLKDQDIDLITYHRKNMKSIQLLKADEYHLKQRNKIETLFSLLKGTYNLVTT  253


>R9AJY8 Transposase DDE domain-containing protein [Acinetobacter 
tandoii DSM 14970 = CIP 107469]
Length=114

 Score = 90.5 bits (223),  Expect = 4e-29
 Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 0/57 (0%)

Query  5   ELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
           ELKSRLK Q IDL+TYH KNM++I+LS  D YHLKQRNKIETLFSLLKGTYNL+T++
Sbjct  23  ELKSRLKDQGIDLMTYHRKNMQAIKLSKADHYHLKQRNKIETLFSLLKGTYNLVTSK  79


>A0A2L0HRV6 IS982 family transposase [Acinetobacter sp. ACNIH2]
Length=289

 Score = 94.7 bits (234),  Expect = 4e-29
 Identities = 44/57 (77%), Positives = 52/57 (91%), Gaps = 0/57 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTT  60
            +ELKSRL++Q +DL+TYH KNMKSIQL   D+YHLKQRNKIETLFSLLKGTYNL+T+
Sbjct  197  QELKSRLRVQGVDLITYHRKNMKSIQLLKADEYHLKQRNKIETLFSLLKGTYNLVTS  253


>A0A7T7WGW7 IS982 family transposase [Acinetobacter variabilis]
Length=289

 Score = 94.0 bits (232),  Expect = 8e-29
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKKQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>A0A7T7WFT2 IS982 family transposase [Acinetobacter variabilis]
Length=289

 Score = 94.0 bits (232),  Expect = 8e-29
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKKQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>N9N2S5 Transposase DDE domain-containing protein [Acinetobacter 
modestus]
Length=289

 Score = 94.0 bits (232),  Expect = 8e-29
 Identities = 45/56 (80%), Positives = 50/56 (89%), Gaps = 0/56 (0%)

Query  5    ELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTT  60
            ELK +L+ QSIDL+TYH KNMKSIQLS  D+YHLKQRNKIETLFSLLKGTYNL+ T
Sbjct  198  ELKGKLRTQSIDLITYHRKNMKSIQLSKADEYHLKQRNKIETLFSLLKGTYNLVIT  253


>A0A0M3AGB0 Transposase [Acinetobacter sp. AG1]
Length=289

 Score = 94.0 bits (232),  Expect = 8e-29
 Identities = 45/56 (80%), Positives = 50/56 (89%), Gaps = 0/56 (0%)

Query  5    ELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTT  60
            ELK +L+ QSIDL+TYH KNMKSIQLS  D+YHLKQRNKIETLFSLLKGTYNL+ T
Sbjct  198  ELKGKLRTQSIDLITYHRKNMKSIQLSKADEYHLKQRNKIETLFSLLKGTYNLVIT  253


>A0A7T7WL75 IS982 family transposase [Acinetobacter variabilis]
Length=289

 Score = 93.6 bits (231),  Expect = 1e-28
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKEQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>A0A7T7WL92 IS982 family transposase [Acinetobacter variabilis]
Length=289

 Score = 93.6 bits (231),  Expect = 1e-28
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKEQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>I4ZRH8 Transposase IS982 [Acinetobacter sp. HA]
Length=289

 Score = 93.6 bits (231),  Expect = 1e-28
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKEQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>A0A2S1FB14 IS982 family transposase [Acinetobacter schindleri]
Length=289

 Score = 93.6 bits (231),  Expect = 1e-28
 Identities = 45/58 (78%), Positives = 52/58 (90%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            +ELKSRLK Q IDL+TYH KNM++IQLS  DKYHLKQRNKIETLFSLLKG YNL+T++
Sbjct  197  QELKSRLKEQGIDLITYHRKNMQAIQLSESDKYHLKQRNKIETLFSLLKGQYNLVTSK  254


>A4KV95 IS982-like element ISAba4 family transposase [Acinetobacter 
baumannii]
Length=292

 Score = 58.5 bits (140),  Expect = 1e-15
 Identities = 29/58 (50%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  4    EELKSRLKLQSIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGTYNLLTTE  61
            + LK  LK Q IDL+TY  KNM+   L   D++HL+QR +IETL  LLK  Y+L+T++
Sbjct  198  QPLKETLKEQGIDLITYPRKNMRVTLLPFSDEFHLRQRKRIETLIGLLKEKYHLVTSK  255


 Score = 14.2 bits (25),  Expect = 8.8
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  38  LKQRNK  43
           LKQ NK
Sbjct  26  LKQENK  31



Lambda      K        H        a         alpha
   0.327    0.139    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128310


  Database: 9301f97dee7879dbad2296ebcf59af69.TrEMBL.fasta
    Posted date:  May 12, 2024  3:18 PM
  Number of letters in database: 3,710
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40