BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5e50336383359c9a1240a6504f565cd6.SwissProt.fasta
7 sequences; 1,391 total letters
Query= ACIAD0063
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
P44624 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Haemop... 202 1e-70
P13016 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Escher... 201 4e-70
P82973 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Entero... 192 1e-66
P82974 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Citrob... 191 2e-66
E1W818 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Salmon... 191 3e-66
P0CL03 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Salmon... 189 1e-65
P75820 N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli ... 68.9 4e-18
>P44624 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 /
Rd)]
Length=184
Score = 202 bits (514), Expect = 1e-70
Identities = 91/179 (51%), Positives = 128/179 (72%), Gaps = 1/179 (1%)
Query 1 MKSHFQVKDGVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQL 60
M+ ++ G+L +Q+ SP++++RP +I L+V+H ISLPP QFGGGY+ FFQ +L
Sbjct 1 MRKIKDIEKGLLTDCRQIQSPHFDKRPNPQDISLLVIHYISLPPEQFGGGYVDDFFQGKL 60
Query 61 DWRLHPYFETIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIE 120
D ++HPYF I M+VSAH LI R+G + Q+VNF DRAWHAG S + G+ +CND++IGIE
Sbjct 61 DPKIHPYFAEIYQMRVSAHCLIERNGRITQYVNFNDRAWHAGVSNFQGREKCNDFAIGIE 120
Query 121 LEGSDDLPFEDIQYERLSEVTQLLQHTYPKIMQ-HLAGHSDIAPVRKTDPGPFFDWRYF 178
LEGS++ PF D QY L E+T ++ +YPKI + + GH DI+P RK DPG +FDW +
Sbjct 121 LEGSNEQPFTDAQYFSLQELTNVIMKSYPKITKDRIVGHCDISPKRKIDPGQYFDWERY 179
>P13016 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Escherichia
coli (strain K12)]
Length=183
Score = 201 bits (510), Expect = 4e-70
Identities = 94/181 (52%), Positives = 128/181 (71%), Gaps = 0/181 (0%)
Query 7 VKDGVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQLDWRLHP 66
++ G L+GA+++ SP+Y+ RP++ L+VVHNISLPP +FGG +I F +D + HP
Sbjct 3 LEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHP 62
Query 67 YFETIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELEGSDD 126
+F I ++VSAH LI R GE++Q+V F RAWHAG SQY G+ CND+SIGIELEG+D
Sbjct 63 FFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDT 122
Query 127 LPFEDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFFDWRYFRRLLDSKK 186
L + D QY++L+ VT+ L YP I +++ GH DIAP RKTDPGP FDW FR L+ +
Sbjct 123 LAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSKET 182
Query 187 T 187
T
Sbjct 183 T 183
>P82973 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Enterobacter
cloacae]
Length=187
Score = 192 bits (487), Expect = 1e-66
Identities = 92/176 (52%), Positives = 120/176 (68%), Gaps = 0/176 (0%)
Query 7 VKDGVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQLDWRLHP 66
+++G L+ A+ + SP+++ RPE+ + L+VVHNISLPP +FGG +I F +D HP
Sbjct 3 LENGWLVDARHVPSPHHDCRPEDEKPTLLVVHNISLPPGEFGGPWIDALFTGTIDPDAHP 62
Query 67 YFETIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELEGSDD 126
+F I + +SA LI R GEV+Q+V F RAWHAG S Y G+ CND+SIGIELEG+D
Sbjct 63 FFAEIAHLALSADCLIRRDGEVVQYVPFDKRAWHAGVSMYQGRERCNDFSIGIELEGTDT 122
Query 127 LPFEDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFFDWRYFRRLL 182
P+ D QYE+L VTQ L YP I ++ GHSDIAP RKTDPGP FDW F +L
Sbjct 123 TPYTDAQYEKLVAVTQTLIGRYPAIADNITGHSDIAPERKTDPGPAFDWSRFHAML 178
>P82974 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Citrobacter
freundii]
Length=187
Score = 191 bits (486), Expect = 2e-66
Identities = 91/174 (52%), Positives = 119/174 (68%), Gaps = 0/174 (0%)
Query 9 DGVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQLDWRLHPYF 68
+G L A+++ SP+Y+ RP++ L+VVHNISLPP +FGG +I F +D HPYF
Sbjct 5 EGWLAEARRVPSPHYDCRPDDENPSLLVVHNISLPPGEFGGPWIDALFTGTIDPNAHPYF 64
Query 69 ETIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELEGSDDLP 128
I ++VSAH LI R GE++Q+V F RAWHAG S Y G+ CND+SIGIELEG+D L
Sbjct 65 AGIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIELEGTDTLA 124
Query 129 FEDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFFDWRYFRRLL 182
+ D QY++L+ VT L YP I ++ GH +IAP RKTDPGP FDW FR L+
Sbjct 125 YTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGPSFDWARFRALV 178
>E1W818 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Salmonella
typhimurium (strain SL1344)]
Length=187
Score = 191 bits (485), Expect = 3e-66
Identities = 90/173 (52%), Positives = 122/173 (71%), Gaps = 0/173 (0%)
Query 10 GVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQLDWRLHPYFE 69
G L+ A+++ SP+Y+ RP++ + L+VVHNISLPP +FGG +I F +D HP+F
Sbjct 6 GWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFGGPWIDALFTGTIDPDAHPFFA 65
Query 70 TIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELEGSDDLPF 129
I ++VSAH LI R GE++Q+V F RAWHAG S Y G+ CND+SIGIELEG+D L +
Sbjct 66 EIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNYQGRERCNDFSIGIELEGTDTLAY 125
Query 130 EDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFFDWRYFRRLL 182
D QY++L+ VT+ L +YP I ++ GH +IAP RKTDPGP FDW FR L+
Sbjct 126 TDAQYQQLAAVTRTLIASYPAIADNMTGHCNIAPDRKTDPGPAFDWPRFRALV 178
>P0CL03 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=187
Score = 189 bits (481), Expect = 1e-65
Identities = 89/173 (51%), Positives = 121/173 (70%), Gaps = 0/173 (0%)
Query 10 GVLIGAQQLSSPNYNQRPENTEICLIVVHNISLPPSQFGGGYIQQFFQNQLDWRLHPYFE 69
G L+ A+++ SP+Y+ RP++ + L+VVHNISLPP +FGG +I F +D HP+F
Sbjct 6 GWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFGGPWIDALFTGTIDPDAHPFFA 65
Query 70 TIQGMQVSAHLLILRSGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELEGSDDLPF 129
I ++VSAH LI R GE++Q+V F RAWHAG S Y G+ CND+SIGIELEG+D L +
Sbjct 66 EIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNYQGRERCNDFSIGIELEGTDTLAY 125
Query 130 EDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFFDWRYFRRLL 182
D QY++L+ VT+ L +YP I ++ GH +I P RKTDPGP FDW FR L+
Sbjct 126 TDAQYQQLAAVTRTLIASYPAIADNMTGHCNITPDRKTDPGPAFDWPRFRALV 178
>P75820 N-acetylmuramoyl-L-alanine amidase AmiD [Escherichia coli
(strain K12)]
Length=276
Score = 68.9 bits (167), Expect = 4e-18
Identities = 44/123 (36%), Positives = 59/123 (48%), Gaps = 16/123 (13%)
Query 70 TIQGMQVSAHLLILR-------SGEVIQFVNFQDRAWHAGRSQYLGQVECNDYSIGIELE 122
T+ QVS+H L+ + Q V Q+ AWHAG S + G ND SIGIELE
Sbjct 62 TLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELE 121
Query 123 GSD---------DLPFEDIQYERLSEVTQLLQHTYPKIMQHLAGHSDIAPVRKTDPGPFF 173
PFE Q + L + + + Y +++ H+DIAP RK DPGP F
Sbjct 122 NRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLF 181
Query 174 DWR 176
W+
Sbjct 182 PWQ 184
Lambda K H a alpha
0.325 0.141 0.443 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 190240
Database: 5e50336383359c9a1240a6504f565cd6.SwissProt.fasta
Posted date: May 20, 2024 8:59 PM
Number of letters in database: 1,391
Number of sequences in database: 7
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
