BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a08f9c85c1e781a55d4592dbb1e7d809.SwissProt.fasta
17 sequences; 6,099 total letters
Query= ACIAD0088
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
Q04973 Vi polysaccharide biosynthesis protein VipB/TviC [Salmonel... 461 3e-167
Q7BJX9 UDP-N-acetylglucosamine 4-epimerase [Plesiomonas shigelloi... 460 5e-167
Q57664 Putative UDP-glucose 4-epimerase [Methanocaldococcus janna... 171 2e-54
A0R5C5 UDP-glucose 4-epimerase [Mycolicibacterium smegmatis (stra... 160 4e-50
P9WN67 UDP-glucose 4-epimerase [Mycobacterium tuberculosis (strai... 155 5e-48
P9WN66 UDP-glucose 4-epimerase [Mycobacterium tuberculosis (strai... 155 5e-48
Q58455 Uncharacterized protein MJ1055 [Methanocaldococcus jannasc... 136 9e-41
P39858 Protein CapI [Staphylococcus aureus] 129 4e-38
Q04871 Uncharacterized 37.6 kDa protein in cld 5'region [Escheric... 129 4e-38
F8C4X8 UDP-glucuronate 4-epimerase [Thermodesulfobacterium geofon... 128 9e-38
O34886 Uncharacterized UDP-glucose epimerase YtcB [Bacillus subti... 126 6e-37
O81312 UDP-glucuronate 4-epimerase 3 [Arabidopsis thaliana] 116 1e-32
Q9LIS3 UDP-glucuronate 4-epimerase 6 [Arabidopsis thaliana] 116 2e-32
Q9LPC1 UDP-glucuronate 4-epimerase 2 [Arabidopsis thaliana] 116 2e-32
O22141 UDP-glucuronate 4-epimerase 4 [Arabidopsis thaliana] 115 5e-32
Q7WTB1 UDP-glucose 4-epimerase [Lactobacillus helveticus] 112 7e-32
Q9STI6 UDP-glucuronate 4-epimerase 5 [Arabidopsis thaliana] 113 2e-31
>Q04973 Vi polysaccharide biosynthesis protein VipB/TviC [Salmonella
typhi]
Length=348
Score = 461 bits (1186), Expect = 3e-167
Identities = 226/339 (67%), Positives = 272/339 (80%), Gaps = 3/339 (1%)
Query 1 MTAYQKQCITLQAAPKTWLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQ 60
MTAY++ L APK WLITGVAGFIGS LLE LL L+Q VIGLDNF+TG+QHNLD+V+
Sbjct 1 MTAYEELRTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVR 60
Query 61 GLVSREQWNNFKFIRGDICQLQDCQAACEGVDYVLHQAALGSVPRSLVDPITTNSVNIGG 120
VS EQW+ F FI+GDI + DCQ AC+ VDYVLHQAALGSVPRSL DPI TNS NI G
Sbjct 61 TSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDG 120
Query 121 FLNMLVAARDAQVKSFTYAASSSTYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFA 180
FLNML AARDA V SFTYAASSSTYGDHP LPK+E+ IG+PLSPYAVTKYVNELYADVFA
Sbjct 121 FLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFA 180
Query 181 RSYGFYCIGLRYFNVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIEN 240
RSY F IGLRYFNVFG+RQ+PNGAY+AVIP+W ++++ E ++INGDG TSRDFC+IEN
Sbjct 181 RSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIEN 240
Query 241 TVQANLLAATTQDAAAKNQVYNVAVGDRTTLNQLFATLQSALA--ENGIHYNKPAVYREF 298
+QANLL+ATT D A+KN+VYNVAVGDRT+LN+L+ ++ L N +P +Y++F
Sbjct 241 VIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP-IYKDF 299
Query 299 RAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
R GDV+HSQADI KI L Y+PE+ +G+ + + WY+
Sbjct 300 RDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338
>Q7BJX9 UDP-N-acetylglucosamine 4-epimerase [Plesiomonas shigelloides]
Length=345
Score = 460 bits (1184), Expect = 5e-167
Identities = 231/342 (68%), Positives = 283/342 (83%), Gaps = 5/342 (1%)
Query 1 MTAYQKQCITLQAAPKTWLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQ 60
M+ Y++ L +PKTWLITGVAGFIGSNLLE LLKL+Q VIGLDNF+TGHQ+NLDEV+
Sbjct 5 MSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK 64
Query 61 GLVSREQWNNFKFIRGDICQLQDCQAACEGVDYVLHQAALGSVPRSLVDPITTNSVNIGG 120
LVS EQW+ F FI GDI L C+ +GVD+VLHQAALGSVPRS+VDPITTN+ NI G
Sbjct 65 TLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITG 124
Query 121 FLNMLVAARDAQVKSFTYAASSSTYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFA 180
FLN+L AA++AQV+SFTYAASSSTYGDHPALPK+E++IG PLSPYAVTKYVNE+YA V+A
Sbjct 125 FLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYA 184
Query 181 RSYGFYCIGLRYFNVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIEN 240
R+YGF IGLRYFNVFG+RQDPNGAYAAVIPKWTAAM++G+DV+INGDGETSRDFC+I+N
Sbjct 185 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 244
Query 241 TVQANLLAATTQDAAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHY-NKPAV-YREF 298
+Q N+L+A +D +AK+ +YNVAVGDRTTLN+L + L N IH+ +K ++ YREF
Sbjct 245 VIQMNILSALAKD-SAKDNIYNVAVGDRTTLNELSGYIYDEL--NLIHHIDKLSIKYREF 301
Query 299 RAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYVQDL 340
R+GDVRHSQAD+ K LL Y+P + +G+ +M WYV+ L
Sbjct 302 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 343
>Q57664 Putative UDP-glucose 4-epimerase [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045
/ NBRC 100440)]
Length=305
Score = 171 bits (434), Expect = 2e-54
Identities = 106/319 (33%), Positives = 176/319 (55%), Gaps = 25/319 (8%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGDI 78
L+TG AGFIGS++++ L++ + VI LDN TG+++N++ +F+ DI
Sbjct 3 LVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNINP-----------KAEFVNADI 51
Query 79 CQLQ-DCQAACEGVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKSFT 137
D + + V+ V+HQAA +V S+ +P+ +N+ G +N+L R +
Sbjct 52 RDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIV 111
Query 138 YAASS-STYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFNVF 196
+A+S + YG+ LP E+H PLSPY ++KYV E Y ++ R YG LRY NV+
Sbjct 112 FASSGGAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query 197 GQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQDAAA 256
G+RQDP G A VI + M++ + I GDG +RDF ++ + +ANL+A
Sbjct 172 GERQDPKGE-AGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNW----- 225
Query 257 KNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREFRAGDVRHSQADIGKISQL 316
KN++ N+ G T++N+LF ++ + G A+Y + R G+V DI K ++
Sbjct 226 KNEIVNIGTGKETSVNELFDIIKHEIGFRG-----EAIYDKPREGEVYRIYLDIKK-AES 279
Query 317 LGYQPEYRFAQGVHKAMHW 335
LG++PE +G+ + ++W
Sbjct 280 LGWKPEIDLKEGIKRVVNW 298
>A0R5C5 UDP-glucose 4-epimerase [Mycolicibacterium smegmatis (strain
ATCC 700084 / mc(2)155)]
Length=313
Score = 160 bits (406), Expect = 4e-50
Identities = 107/321 (33%), Positives = 166/321 (52%), Gaps = 19/321 (6%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGDI 78
L+TG AGFIGS L++ LL V+GLD+ ++G NL S E + F+F++ DI
Sbjct 4 LVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLH------SAENSDKFEFVKADI 57
Query 79 CQLQDCQAACE-GVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKSFT 137
E + + H AA SV RS+ DP +VN+ G + + AAR A V+
Sbjct 58 VDADLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVV 117
Query 138 YAASS-STYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFNVF 196
+ +S S YG PA P ED P SPYA K E+Y +++ Y C + NV+
Sbjct 118 HTSSGGSVYGTPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPANVY 177
Query 197 GQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQDAAA 256
G RQDP+G A V+ ++ A++ G I GDG +RD+ F+++ V A + A A
Sbjct 178 GPRQDPHGE-AGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAG---GPAG 233
Query 257 KNQVYNVAVGDRTTLNQLFATLQSAL-AENGIHYNKPAVYREFRAGDVRHSQADIGKISQ 315
Q +NV G T+ +L + A+ A + ++ P R GD+R S+ D + +
Sbjct 234 GGQRFNVGTGVETSTRELHTAIAGAVGAPDEPEFHPP------RLGDLRRSRLDNTRARE 287
Query 316 LLGYQPEYRFAQGVHKAMHWY 336
+LG+QP+ A+G+ K + ++
Sbjct 288 VLGWQPQVALAEGIAKTVEFF 308
>P9WN67 UDP-glucose 4-epimerase [Mycobacterium tuberculosis (strain
ATCC 25618 / H37Rv)]
Length=314
Score = 155 bits (392), Expect = 5e-48
Identities = 104/322 (32%), Positives = 161/322 (50%), Gaps = 21/322 (7%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGDI 78
L+TG AGFIGS L++ LL V+GLDNFATG NL+ + + F+ DI
Sbjct 4 LVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHV------FVEADI 57
Query 79 CQLQDCQAACEG--VDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKSF 136
D A E + V H AA V RS+ DP +VN+ G + + AAR V+
Sbjct 58 VTA-DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKI 116
Query 137 TYAASS-STYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFNV 195
+ +S S YG P P E P SPYA K E+Y + F YG C + NV
Sbjct 117 VHTSSGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANV 176
Query 196 FGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQDAA 255
+G RQDP+G A V+ + A++ G+ + GDG +RD+ F+++ V A + +
Sbjct 177 YGPRQDPHGE-AGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVGGG 235
Query 256 AKNQVYNVAVGDRTTLNQLFATLQSAL-AENGIHYNKPAVYREFRAGDVRHSQADIGKIS 314
+ +N+ G T+ QL + + +A+ + ++ P R GD++ S DIG
Sbjct 236 LR---FNIGTGKETSDRQLHSAVAAAVGGPDDPEFHPP------RLGDLKRSCLDIGLAE 286
Query 315 QLLGYQPEYRFAQGVHKAMHWY 336
++LG++P+ A GV + + ++
Sbjct 287 RVLGWRPQIELADGVRRTVEYF 308
>P9WN66 UDP-glucose 4-epimerase [Mycobacterium tuberculosis (strain
CDC 1551 / Oshkosh)]
Length=314
Score = 155 bits (392), Expect = 5e-48
Identities = 104/322 (32%), Positives = 161/322 (50%), Gaps = 21/322 (7%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGDI 78
L+TG AGFIGS L++ LL V+GLDNFATG NL+ + + F+ DI
Sbjct 4 LVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHV------FVEADI 57
Query 79 CQLQDCQAACEG--VDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKSF 136
D A E + V H AA V RS+ DP +VN+ G + + AAR V+
Sbjct 58 VTA-DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKI 116
Query 137 TYAASS-STYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFNV 195
+ +S S YG P P E P SPYA K E+Y + F YG C + NV
Sbjct 117 VHTSSGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANV 176
Query 196 FGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQDAA 255
+G RQDP+G A V+ + A++ G+ + GDG +RD+ F+++ V A + +
Sbjct 177 YGPRQDPHGE-AGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVGGG 235
Query 256 AKNQVYNVAVGDRTTLNQLFATLQSAL-AENGIHYNKPAVYREFRAGDVRHSQADIGKIS 314
+ +N+ G T+ QL + + +A+ + ++ P R GD++ S DIG
Sbjct 236 LR---FNIGTGKETSDRQLHSAVAAAVGGPDDPEFHPP------RLGDLKRSCLDIGLAE 286
Query 315 QLLGYQPEYRFAQGVHKAMHWY 336
++LG++P+ A GV + + ++
Sbjct 287 RVLGWRPQIELADGVRRTVEYF 308
>Q58455 Uncharacterized protein MJ1055 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=326
Score = 136 bits (343), Expect = 9e-41
Identities = 101/331 (31%), Positives = 164/331 (50%), Gaps = 22/331 (7%)
Query 16 KTWLITGVAGFIGSNLLETLLKL--DQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKF 73
K L+TG AGFIG +L + L+ D +VIG+DN + L E + + + + N+ F
Sbjct 4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKN-YENYTF 62
Query 74 IRGDICQLQDCQAACEG--VDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDA 131
I+ D D + +D ++H A V SL +P N G LN+ AR
Sbjct 63 IKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRF 122
Query 132 QVKSFTYAASSSTYGDHPALPKLED-HIGKPLSPYAVTKYVNELYADVFARSYGFYCIGL 190
++ YA+SSS YG + +P ED + KP+S YA TK NEL A V+ YG IGL
Sbjct 123 DIEKVVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGL 182
Query 191 RYFNVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAAT 250
R+F V+G+ P+ AY K+ ++ G+++ + G RDF +I + V +L A
Sbjct 183 RFFTVYGEYGRPDMAYF----KFAKNILLGKEIEVYNYGNMERDFTYISDVVD-GILRAI 237
Query 251 TQDAAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPA--VYREFRAGDVRHSQA 308
+D +++N+ L ++ L NK A + + GDV + A
Sbjct 238 KKD--FDYEIFNLGNSKPVKLMYFIELIEKYL-------NKKAKKKFLPMQDGDVLRTYA 288
Query 309 DIGKISQLLGYQPEYRFAQGVHKAMHWYVQD 339
D+ K +LLGY+P+ +G+ + +W++++
Sbjct 289 DLSKSEKLLGYKPKVTIEEGLKRFCNWFLEN 319
>P39858 Protein CapI [Staphylococcus aureus]
Length=334
Score = 129 bits (325), Expect = 4e-38
Identities = 97/341 (28%), Positives = 165/341 (48%), Gaps = 35/341 (10%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQ-GLVSREQWNNFKFIRGD 77
LITG AGFIGS+L + L+K VIG+D+ + +L E + + +E NF F +
Sbjct 4 LITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKE---NFTFNKVK 60
Query 78 ICQLQDCQAAC--EGVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKS 135
+ D E + V++ AA V S+ +P T NI GF+N+L +R +++
Sbjct 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN 120
Query 136 FTYAASSSTYGDHPALP-KLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFN 194
YA+SSS YG + + P D+I PLS YA TK NEL A ++ Y GLR+F
Sbjct 121 LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT 180
Query 195 VFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQDA 254
V+G P G + K+T A++ + + + G RDF ++++ V+A ++ +
Sbjct 181 VYG----PWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEA--ISRLVKKP 234
Query 255 AAKN-----------------QVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYRE 297
A+ N +VYN+ L + +++ L + Y +
Sbjct 235 ASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEA-----RKNYMD 289
Query 298 FRAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYVQ 338
+ GDV + A++ + + + ++PE GV+K + WY++
Sbjct 290 LQPGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLE 330
Score = 18.5 bits (36), Expect = 4.5
Identities = 7/19 (37%), Positives = 14/19 (74%), Gaps = 2/19 (11%)
Query 15 PKTWLITGVAGFIGSNLLE 33
P+T++ + + GF+ N+LE
Sbjct 95 PRTYIDSNIVGFM--NILE 111
>Q04871 Uncharacterized 37.6 kDa protein in cld 5'region [Escherichia
coli O111:H-]
Length=334
Score = 129 bits (325), Expect = 4e-38
Identities = 99/338 (29%), Positives = 162/338 (48%), Gaps = 31/338 (9%)
Query 18 WLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQ-GLVSREQWNNFKFIRG 76
+L+TG AGFIG ++ + LL+ +V+G+DN + +L + + L+++ + K
Sbjct 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62
Query 77 DICQLQDCQAA--CEGVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVK 134
D + D A+ E V H+ A V SL +P N+ GFLN+L R +++
Sbjct 63 DREGMTDLFASGHFERVFISPHRLA---VRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119
Query 135 SFTYAASSSTYGDHPALP-KLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
YA+SSS YG + +P +D + P+S YA TK NEL A ++ YG GLR+F
Sbjct 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQA--------- 244
V+G P G + K+T AM++G+ + + G+ RDF +I++ +A
Sbjct 180 TVYG----PWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235
Query 245 ------NLLAATTQDAAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREF 298
+ T + A +VYN+ L L+ AL GI K +
Sbjct 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL---GIEAKKNML--PL 290
Query 299 RAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWY 336
+ GDV + AD + +++G+ PE GV ++WY
Sbjct 291 QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>F8C4X8 UDP-glucuronate 4-epimerase [Thermodesulfobacterium geofontis
(strain OPF15)]
Length=323
Score = 128 bits (322), Expect = 9e-38
Identities = 101/328 (31%), Positives = 160/328 (49%), Gaps = 21/328 (6%)
Query 18 WLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGD 77
+L+TGVAGFIG + E LLK + V+G+DN + L + L ++ NFKF + D
Sbjct 4 YLVTGVAGFIGWRVGEFLLKEGKAVLGVDNLNDAYDVTL-KYWRLNELKKSENFKFYQID 62
Query 78 ICQLQDCQAACE--GVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKS 135
I Q + E + V+H AA V SL +P NI G LN+L +D VK
Sbjct 63 ITNFQALKTIFETYSISAVIHLAARAGVRASLENPWVYVDSNITGTLNLLELMKDFGVKK 122
Query 136 FTYAASSSTY-GDHPALPKLED-HIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
A++SS Y G P P ED + PLSPYA TK EL + + YG +RYF
Sbjct 123 LVLASTSSIYAGQSP--PFHEDLKVDTPLSPYAATKKGAELLSYTYHHLYGLDISVVRYF 180
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQD 253
V+G P+ + I KW + + + + I GDG +RDF +I++ + + +
Sbjct 181 TVYGPAGRPDMSIFRFI-KW---IYEEKPIKIFGDGTQARDFTYIDDIARGTIASLKPLG 236
Query 254 AAAKNQVYNVAVGDRT-TLNQLFATLQSALAENGIHYNKPAVYREFRAGDVRHSQADIGK 312
++ N+ G ++NQ+ L+ + + Y F DV+ + ADI K
Sbjct 237 Y----EIINLGGGKNPISINQIIEILERLIGKKA-----KREYLNFHKADVKVTWADISK 287
Query 313 ISQLLGYQPEYRFAQGVHKAMHWYVQDL 340
+LL ++PE +G+ + ++W +++
Sbjct 288 AKKLLNWEPEISIEEGLKRTVNWSKENI 315
>O34886 Uncharacterized UDP-glucose epimerase YtcB [Bacillus subtilis
(strain 168)]
Length=316
Score = 126 bits (316), Expect = 6e-37
Identities = 96/317 (30%), Positives = 160/317 (50%), Gaps = 24/317 (8%)
Query 19 LITGVAGFIGSNLLETLLK-LDQRVIGLDNFA--TGHQHNLDEVQGLVSREQWNNFKFIR 75
L+TG AGFIGS+L E LLK VIG+D+F T L ++ L+ ++ F FI+
Sbjct 4 LVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKR---FTFIK 60
Query 76 GDICQLQDCQAACEGVDYVLHQAALGSVPRSLVDPITTNSV-NIGGFLNMLVAARDAQVK 134
++ D + EGVD + H AA+ V S + + NI +L A R+ ++
Sbjct 61 ENLLTA-DLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQ 119
Query 135 SFTYAASSSTYGDHPALPKLEDHIG-KPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
+F +A++SS YG+ K+ ++ PLSPY VTK E V+ +S+G + LR+F
Sbjct 120 TFVFASTSSVYGEKQG--KVSENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFF 177
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENTVQANLLAATTQD 253
V+G RQ P+ A+ +I + +Q + + I GDG+ SRDF +I + V+ + A
Sbjct 178 TVYGPRQRPDMAFHRLIKQ----HLQQKPLTIFGDGQQSRDFTYISDCVKG--ITAVLGK 231
Query 254 AAAKNQVYNVAVGDRTTLNQLFATLQSALAENG-IHYNKPAVYREFRAGDVRHSQADIGK 312
+ N+ +R ++ ++ + ++ +H++ AG+ ++ ADI K
Sbjct 232 PHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKI------AGEPSNTWADISK 285
Query 313 ISQLLGYQPEYRFAQGV 329
QLL Y P G+
Sbjct 286 AKQLLHYDPATSLKDGL 302
>O81312 UDP-glucuronate 4-epimerase 3 [Arabidopsis thaliana]
Length=430
Score = 116 bits (291), Expect = 1e-32
Identities = 98/337 (29%), Positives = 158/337 (47%), Gaps = 29/337 (9%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEV-QGLVSREQWNNFKFIRGD 77
L+TG AGF+G+++ L + V+GLDNF + +L Q L+ R + + GD
Sbjct 94 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLER---SGVFVVEGD 150
Query 78 ICQLQDCQAACEGVDY--VLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVK- 134
I + E V + V+H AA V ++ +P + NI GF+N+L + A +
Sbjct 151 INDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQP 210
Query 135 SFTYAASSSTYGDHPALPKLE-DHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
+ +A+SSS YG + +P E D +P S YA TK E A + YG GLR+F
Sbjct 211 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 270
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFI---NGDGETSRDFCFIENTVQANLLAAT 250
V+G P+ AY +T +++G+ + I G +RDF +I++ V+ L A
Sbjct 271 TVYGPWGRPDMAYFF----FTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALD 326
Query 251 TQD----------AAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREFRA 300
T + AA+ +V+N+ + L L+ L K + + R
Sbjct 327 TAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKA----KRNIMKLPRN 382
Query 301 GDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
GDV+ + A+I + LGY+P G+ K WY+
Sbjct 383 GDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYL 419
>Q9LIS3 UDP-glucuronate 4-epimerase 6 [Arabidopsis thaliana]
Length=460
Score = 116 bits (291), Expect = 2e-32
Identities = 97/337 (29%), Positives = 162/337 (48%), Gaps = 29/337 (9%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEV-QGLVSREQWNNFKFIRGD 77
L+TG AGF+GS+ L K V+G DNF + +L Q L+ ++Q + GD
Sbjct 115 LVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQ---VFIVEGD 171
Query 78 ICQLQDCQAACEGVDY--VLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVK- 134
+ + + V + +LH AA V ++ +P + + NI GF+N+L A+ A +
Sbjct 172 LNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQP 231
Query 135 SFTYAASSSTYGDHPALPKLEDH-IGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
+ +A+SSS YG + P E+H +P S YA TK E A + YG GLR+F
Sbjct 232 AIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 291
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFI---NGDGETSRDFCFIENTVQANLLAAT 250
V+G P+ AY +T ++ G+ + I + E +RDF +I++ V+ + A
Sbjct 292 TVYGPWGRPDMAYFF----FTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALD 347
Query 251 TQDAA----------AKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREFRA 300
T + + A+ +VYN+ + +L + L+ L K + + R
Sbjct 348 TAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKA----KKHLIKMPRN 403
Query 301 GDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
GDV ++ A++ + GY+P A G+ K + WYV
Sbjct 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV 440
>Q9LPC1 UDP-glucuronate 4-epimerase 2 [Arabidopsis thaliana]
Length=434
Score = 116 bits (290), Expect = 2e-32
Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 29/337 (9%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEV-QGLVSREQWNNFKFIRGD 77
L+TG AGF+G+++ L + V+GLDNF + +L Q L+ R + + GD
Sbjct 95 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLER---SGVFIVEGD 151
Query 78 ICQLQDCQAACEGVDY--VLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVK- 134
I L + E V + V+H AA V ++ +P + NI GF+N+L + A +
Sbjct 152 INDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQP 211
Query 135 SFTYAASSSTYGDHPALPKLE-DHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYF 193
+ +A+SSS YG + +P E D +P S YA TK E A + YG GLR+F
Sbjct 212 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 271
Query 194 NVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFI---NGDGETSRDFCFIENTVQANLLAAT 250
V+G P+ AY +T +++G+ + I G +RDF +I++ V+ L A
Sbjct 272 TVYGPWGRPDMAYFF----FTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALD 327
Query 251 TQD----------AAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREFRA 300
T + AA+ +V+N+ + L + L+ L K + + R
Sbjct 328 TAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKA----KRNMMKLPRN 383
Query 301 GDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
GDV + A+I + GY+P G+ K + WY+
Sbjct 384 GDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYL 420
>O22141 UDP-glucuronate 4-epimerase 4 [Arabidopsis thaliana]
Length=437
Score = 115 bits (287), Expect = 5e-32
Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 29/339 (9%)
Query 17 TWLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQ-GLVSREQWNNFKFIR 75
T L+TG AGF+G+++ L + VIGLDNF + +L + L+ R + +
Sbjct 98 TVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRALLER---SGIFIVE 154
Query 76 GDICQLQDCQAACEGVDY--VLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQV 133
GDI ++ + + V + V+H AA V ++ +P + NI GF+N+L +
Sbjct 155 GDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNP 214
Query 134 K-SFTYAASSSTYGDHPALPKLE-DHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLR 191
+ + +A+SSS YG + +P E D +P S YA TK E A + YG GLR
Sbjct 215 QPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 274
Query 192 YFNVFGQRQDPNGAYAAVIPKWTAAMIQGEDVFI---NGDGETSRDFCFIENTVQANLLA 248
+F V+G P+ AY +T +++G+ + I G +RDF +I++ V+ L A
Sbjct 275 FFTVYGPWGRPDMAYFF----FTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAA 330
Query 249 ATTQDAA----------AKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREF 298
T + + A+ +V+N+ ++ L L+ L K + +
Sbjct 331 LDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKA----KKNLIKMP 386
Query 299 RAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
R GDV + A+I + LGY+P G+ K + WY+
Sbjct 387 RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 425
>Q7WTB1 UDP-glucose 4-epimerase [Lactobacillus helveticus]
Length=330
Score = 112 bits (281), Expect = 7e-32
Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 30/319 (9%)
Query 19 LITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEVQGLVSREQWNNFKFIRGDI 78
L+ G AG+IGS+ + L+K V+ LD TGH+ +D KF +GDI
Sbjct 4 LVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAVDP-----------KAKFYQGDI 52
Query 79 CQ--LQDCQAACEGVDYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQVKSF 136
L E +D V+H AA VP S+ P+ N+ G +++L A DA VK
Sbjct 53 EDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYL 112
Query 137 TYAASSSTYGDHPALPKLEDHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLRYFNVF 196
+++S++TYG LP ED P++PY TK + E ++ G LRYFNV
Sbjct 113 VFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVA 172
Query 197 GQRQD-----PNGAYAAVIPKWTAAMIQGE-------DVFINGDGETSRDFCFIENTVQA 244
G D + +IP + I G+ D + DG RD+ +E+ + A
Sbjct 173 GASSDGSIGEDHAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVEDLIDA 232
Query 245 NLLAATTQDAAAKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREFRAGDVR 304
++LA K+ V+N+ + ++ L+SA GI + P R GD
Sbjct 233 HILALKHMMKTNKSDVFNLGTAHGYSNLEI---LESAKKVTGI--DIPYTMGPRRGGDPD 287
Query 305 HSQADIGKISQLLGYQPEY 323
AD K +LG++P++
Sbjct 288 SLVADSTKARTVLGWKPKH 306
>Q9STI6 UDP-glucuronate 4-epimerase 5 [Arabidopsis thaliana]
Length=436
Score = 113 bits (282), Expect = 2e-31
Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 29/339 (9%)
Query 17 TWLITGVAGFIGSNLLETLLKLDQRVIGLDNFATGHQHNLDEV-QGLVSREQWNNFKFIR 75
T L+TG +GF+G+++ L + V+GLDNF + L QGL+ R + +
Sbjct 97 TVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLER---SGVFVVE 153
Query 76 GDICQLQDCQAACEGV--DYVLHQAALGSVPRSLVDPITTNSVNIGGFLNMLVAARDAQV 133
GDI + + V +V+H AA V ++ +P + + NI GF+N+L ++ A
Sbjct 154 GDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANP 213
Query 134 K-SFTYAASSSTYGDHPALPKLE-DHIGKPLSPYAVTKYVNELYADVFARSYGFYCIGLR 191
+ + +A+SSS YG + +P E D +P S YA TK E A + YG GLR
Sbjct 214 QPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLR 273
Query 192 YFNVFGQRQDPNGAYAAVIPKWTAAMIQGE--DVFINGD-GETSRDFCFIENTVQANLLA 248
+F V+G P+ AY +T +++G+ VF + D G +RDF +I++ V+ L A
Sbjct 274 FFTVYGPWGRPDMAYFF----FTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGA 329
Query 249 ATTQDAA----------AKNQVYNVAVGDRTTLNQLFATLQSALAENGIHYNKPAVYREF 298
T + + A ++YN+ + +L L+ L K +
Sbjct 330 LDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKA----KKKIMPLP 385
Query 299 RAGDVRHSQADIGKISQLLGYQPEYRFAQGVHKAMHWYV 337
R GDV + A+I LGY+P G+ K + WY+
Sbjct 386 RNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYM 424
Lambda K H a alpha
0.322 0.136 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1563768
Database: a08f9c85c1e781a55d4592dbb1e7d809.SwissProt.fasta
Posted date: May 31, 2024 10:36 AM
Number of letters in database: 6,099
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
