BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 3d0eb30c3ef82432b7e4e8ed302a119e.SwissProt.fasta
26 sequences; 7,573 total letters
Query= ACIAD0160
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
Q51872 Probable transcriptional regulator LumQ [Photobacterium le... 81.6 2e-21
B5XZ49 HTH-type transcriptional activator RhaS [Klebsiella pneumo... 77.0 1e-19
A7ZUB7 HTH-type transcriptional activator RhaS [Escherichia coli ... 76.6 2e-19
A6TGA9 HTH-type transcriptional activator RhaS [Klebsiella pneumo... 76.6 2e-19
B7LVD8 HTH-type transcriptional activator RhaS [Escherichia fergu... 76.3 3e-19
B6I4P8 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.5 5e-19
B7NUA1 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.1 7e-19
B7L9G1 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.1 7e-19
B7MI37 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.1 7e-19
B7UNM6 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.1 7e-19
P09377 HTH-type transcriptional activator RhaS [Escherichia coli ... 75.1 7e-19
B4TPQ9 HTH-type transcriptional activator RhaS [Salmonella schwar... 75.1 7e-19
B5YZ43 HTH-type transcriptional activator RhaS [Escherichia coli ... 74.7 1e-18
Q8X897 HTH-type transcriptional activator RhaS [Escherichia coli ... 74.7 1e-18
P0A2T0 HTH-type transcriptional activator RhaS [Salmonella typhi] 73.9 2e-18
B5BJG8 HTH-type transcriptional activator RhaS [Salmonella paraty... 73.9 2e-18
C0Q3L4 HTH-type transcriptional activator RhaS [Salmonella paraty... 73.9 2e-18
A9MZC8 HTH-type transcriptional activator RhaS [Salmonella paraty... 73.9 2e-18
P0A2S9 HTH-type transcriptional activator RhaS [Salmonella typhim... 73.9 2e-18
Q00753 Msm operon regulatory protein [Streptococcus mutans seroty... 63.9 6e-15
P40408 HTH-type transcriptional activator Btr [Bacillus subtilis ... 64.3 9e-15
G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aerug... 63.5 1e-14
Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholde... 58.9 4e-13
P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa (s... 58.5 5e-13
P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aerug... 57.4 9e-13
P09378 HTH-type transcriptional activator RhaR [Escherichia coli ... 54.3 1e-11
>Q51872 Probable transcriptional regulator LumQ [Photobacterium
leiognathi]
Length=248
Score = 81.6 bits (200), Expect = 2e-21
Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query 146 DSSNHLQLSSAADLLLNH-----LLQSYSNVQWQLPRVRGGLAPFLLKRVKA-------- 192
D+ H +S A L H L QS SN L ++ L F K+V+
Sbjct 95 DARTHQLISLLATELKEHADDSLLSQSISNTLQCL--IKRSLMLFDEKKVERLNMVLIDN 152
Query 193 WINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCD 252
+I +HL I++A+L++ L++ F +FK G++PHQYVL++RL+ A LI
Sbjct 153 YIEQHLQKKISVAELSSVAFLAQSQFYALFKSQMGITPHQYVLRKRLDLAKQLIAERQKP 212
Query 253 LTQIALQCGFSSASHFSTRFKHHYGYSPS 281
L+Q+A CGFSS S FS F+ YG SP+
Sbjct 213 LSQVAQLCGFSSQSSFSQAFRRLYGMSPT 241
>B5XZ49 HTH-type transcriptional activator RhaS [Klebsiella pneumoniae
(strain 342)]
Length=278
Score = 77.0 bits (188), Expect = 1e-19
Identities = 36/99 (36%), Positives = 58/99 (59%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H I ++AAQ LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDESVTDIAFRCGFGDSNHFSTLFRREFDWSPRDIRQ 271
>A7ZUB7 HTH-type transcriptional activator RhaS [Escherichia coli
O139:H28 (strain E24377A / ETEC)]
Length=278
Score = 76.6 bits (187), Expect = 2e-19
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TGV+P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVAEQFSLSLRTLHRQLKQQTGVTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>A6TGA9 HTH-type transcriptional activator RhaS [Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=278
Score = 76.6 bits (187), Expect = 2e-19
Identities = 36/99 (36%), Positives = 58/99 (59%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H I ++AAQ LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDESVTDIAYRCGFGDSNHFSTLFRREFDWSPRDIRQ 271
>B7LVD8 HTH-type transcriptional activator RhaS [Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM
14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC
0568-73)]
Length=278
Score = 76.3 bits (186), Expect = 3e-19
Identities = 35/99 (35%), Positives = 58/99 (59%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L + AW+ +H A++ +A + LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNHLIAWLEDHFAEAVSWEAIADRFALSLRTLHRQLKQHTGLTPQRYLNRLRLVKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T IA CGF+ ++HFST F+ +G+SP +R+
Sbjct 233 RHSDDSVTHIAFSCGFADSNHFSTLFRREFGWSPREIRQ 271
>B6I4P8 HTH-type transcriptional activator RhaS [Escherichia coli
(strain SE11)]
Length=278
Score = 75.5 bits (184), Expect = 5e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVAEQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>B7NUA1 HTH-type transcriptional activator RhaS [Escherichia coli
O7:K1 (strain IAI39 / ExPEC)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEEENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQKTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>B7L9G1 HTH-type transcriptional activator RhaS [Escherichia coli
(strain 55989 / EAEC)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>B7MI37 HTH-type transcriptional activator RhaS [Escherichia coli
O45:K1 (strain S88 / ExPEC)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEEENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQKTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>B7UNM6 HTH-type transcriptional activator RhaS [Escherichia coli
O127:H6 (strain E2348/69 / EPEC)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>P09377 HTH-type transcriptional activator RhaS [Escherichia coli
(strain K12)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 45/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA +CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>B4TPQ9 HTH-type transcriptional activator RhaS [Salmonella schwarzengrund
(strain CVM19633)]
Length=278
Score = 75.1 bits (183), Expect = 7e-19
Identities = 35/99 (35%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ EH + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEEHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>B5YZ43 HTH-type transcriptional activator RhaS [Escherichia coli
O157:H7 (strain EC4115 / EHEC)]
Length=278
Score = 74.7 bits (182), Expect = 1e-18
Identities = 45/152 (30%), Positives = 75/152 (49%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYHCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>Q8X897 HTH-type transcriptional activator RhaS [Escherichia coli
O157:H7]
Length=278
Score = 74.7 bits (182), Expect = 1e-18
Identities = 45/152 (30%), Positives = 75/152 (49%), Gaps = 7/152 (5%)
Query 136 RHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSY--SNVQWQLPRVRGGLAPFLLKRVKAW 193
R + + ++ N L +++ ++L LL S++Q L L L AW
Sbjct 125 RQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLL-----AW 179
Query 194 INEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDL 253
+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+ H +
Sbjct 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
Query 254 TQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
T IA CGFS ++HFST F+ + +SP +R+
Sbjct 240 TDIAYHCGFSDSNHFSTLFRREFNWSPRDIRQ 271
>P0A2T0 HTH-type transcriptional activator RhaS [Salmonella typhi]
Length=278
Score = 73.9 bits (180), Expect = 2e-18
Identities = 34/99 (34%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>B5BJG8 HTH-type transcriptional activator RhaS [Salmonella paratyphi
A (strain AKU_12601)]
Length=278
Score = 73.9 bits (180), Expect = 2e-18
Identities = 34/99 (34%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>C0Q3L4 HTH-type transcriptional activator RhaS [Salmonella paratyphi
C (strain RKS4594)]
Length=278
Score = 73.9 bits (180), Expect = 2e-18
Identities = 34/99 (34%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>A9MZC8 HTH-type transcriptional activator RhaS [Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7)]
Length=278
Score = 73.9 bits (180), Expect = 2e-18
Identities = 34/99 (34%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>P0A2S9 HTH-type transcriptional activator RhaS [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=278
Score = 73.9 bits (180), Expect = 2e-18
Identities = 34/99 (34%), Positives = 57/99 (58%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L ++ AW+ +H + +A Q LS KQ TG++P +Y+ + RL +A HL+
Sbjct 173 LNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLL 232
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
H +T+IA +CGF ++HFST F+ + +SP +R+
Sbjct 233 RHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQ 271
>Q00753 Msm operon regulatory protein [Streptococcus mutans serotype
c (strain ATCC 700610 / UA159)]
Length=278
Score = 63.9 bits (154), Expect = 6e-15
Identities = 30/100 (30%), Positives = 61/100 (61%), Gaps = 0/100 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
+ +VK I+ +++ + D+A + LS + +F++ST +S +Y+LQ R++R+ +L+
Sbjct 175 VNQVKKIIHSQYGSSLRVNDIAKKLNLSRSYLYKIFRKSTNLSIKEYILQVRMKRSQYLL 234
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQ 286
+ + +I+ GFS + FS FK+++G SPS R++
Sbjct 235 ENPKLSIAEISNSVGFSDSLAFSKAFKNYFGKSPSKFRKE 274
>P40408 HTH-type transcriptional activator Btr [Bacillus subtilis
(strain 168)]
Length=529
Score = 64.3 bits (155), Expect = 9e-15
Identities = 31/95 (33%), Positives = 54/95 (57%), Gaps = 0/95 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
+++ K +I H T IT+A L+ +S H++ FK+ TG S +++ + R+ +A L+
Sbjct 165 IEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLM 224
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPS 281
+C L +IA Q G+ +FS FK + G SP+
Sbjct 225 AKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPT 259
Score = 31.6 bits (70), Expect = 4e-04
Identities = 27/107 (25%), Positives = 50/107 (47%), Gaps = 14/107 (13%)
Query 152 QLSSAADLLLNHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITIADLAAQT 211
QLS A + H +S+ +W V + + + K + + + + ++A QT
Sbjct 184 QLSQMAGISAKHYSESFK--KWTGQSVTEFITKTRITKAKRLMAK---SNCKLKEIAHQT 238
Query 212 QLS-EYHFAHMFKQSTGVSPHQYVLQQRLERA--------HHLILHH 249
E++F+ +FK+ TG SP Y+ ++R + A H + LHH
Sbjct 239 GYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHH 285
>G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=329
Score = 63.5 bits (153), Expect = 1e-14
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 1/142 (1%)
Query 145 RDSSNHLQLSSAADLLLNHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITI 204
RD L + + +L++ + + + L G P L + V + ++ +T
Sbjct 172 RDHGAELAGAVSEELVVERIREGNERQRIPLKNRLGSSHPKLTQAVLL-MEANIEEPLTT 230
Query 205 ADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDLTQIALQCGFSS 264
++A +S +FKQ P QY L+ RL RA +++ S + QI L CGFSS
Sbjct 231 DEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNRARQMLMQTSKSIIQIGLSCGFSS 290
Query 265 ASHFSTRFKHHYGYSPSVLRRQ 286
HFS+ +++ +G +P R Q
Sbjct 291 GPHFSSAYRNFFGVTPREDRNQ 312
Score = 18.5 bits (36), Expect = 4.5
Identities = 7/22 (32%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 217 HFAHMFKQSTGVSPHQYVLQQR 238
HF+ ++ GV+P + Q+R
Sbjct 293 HFSSAYRNFFGVTPREDRNQRR 314
Score = 18.1 bits (35), Expect = 6.0
Identities = 17/61 (28%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query 97 YYTDQHLRTLACKIWDKEPAQIQLQEQ-SFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSS 155
YY + L + + IQ+ F S SS YR+F G R+ N + S
Sbjct 259 YYLELRLNRARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNF-FGVTPREDRNQRRGGS 317
Query 156 A 156
A
Sbjct 318 A 318
>Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholderia
cepacia]
Length=318
Score = 58.9 bits (141), Expect = 4e-13
Identities = 31/101 (31%), Positives = 49/101 (49%), Gaps = 2/101 (2%)
Query 183 APFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERA 242
AP L R + ++N H + +AD+ + E F Q G+SP QY+ RLE A
Sbjct 211 APGFLLRAQEFVNAHYAQPLQLADIVVAANVPERTLRDAFLQFRGMSPMQYLRATRLEHA 270
Query 243 HHLILHHSCD--LTQIALQCGFSSASHFSTRFKHHYGYSPS 281
L+ + + +AL CGF+ F+ ++ +G SPS
Sbjct 271 RELLRRSQPERRIADVALDCGFTHLGRFAIAYREKFGESPS 311
>P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=307
Score = 58.5 bits (140), Expect = 5e-13
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 0/100 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
L + A++ EHLH + + LAA LS++HF +K TG +P Q+ L ++E A L+
Sbjct 200 LDGLHAYMREHLHARLELERLAAFCNLSKFHFVSRYKAITGRTPIQHFLHLKIEYACQLL 259
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQ 286
+ ++ G+ + +FS F G SPS R++
Sbjct 260 DSSDQSVARVGQAVGYDDSYYFSRLFSKVMGLSPSAYRQR 299
>P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=278
Score = 57.4 bits (137), Expect = 9e-13
Identities = 26/99 (26%), Positives = 56/99 (57%), Gaps = 0/99 (0%)
Query 187 LKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLI 246
++R++ ++ +H ++D + + + F +F GVSP ++ ++R+ AH L+
Sbjct 170 VERLQLFMEKHYLNEWKLSDFSREFGMGLTTFKELFGSVYGVSPRAWISERRILYAHQLL 229
Query 247 LHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRR 285
L+ + IA++ GFSS S+F+ ++ +G +PS R+
Sbjct 230 LNSDMSIVDIAMEAGFSSQSYFTQSYRRRFGCTPSRSRQ 268
>P09378 HTH-type transcriptional activator RhaR [Escherichia coli
(strain K12)]
Length=282
Score = 54.3 bits (129), Expect = 1e-11
Identities = 34/140 (24%), Positives = 67/140 (48%), Gaps = 1/140 (1%)
Query 146 DSSNHLQLSSA-ADLLLNHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITI 204
+SS H+ ++ A+LL L+ + ++ + + LL ++ + L + +
Sbjct 136 ESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFAL 195
Query 205 ADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLERAHHLILHHSCDLTQIALQCGFSS 264
+ SE F+Q TG++ +QY+ Q R+ A +L+ H ++ I+ +CGF
Sbjct 196 DKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFED 255
Query 265 ASHFSTRFKHHYGYSPSVLR 284
+++FS F G +PS R
Sbjct 256 SNYFSVVFTRETGMTPSQWR 275
Lambda K H a alpha
0.325 0.134 0.429 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1524325
Database: 3d0eb30c3ef82432b7e4e8ed302a119e.SwissProt.fasta
Posted date: Jun 3, 2024 5:23 PM
Number of letters in database: 7,573
Number of sequences in database: 26
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
