BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4501f3679ff1afb3eb0b6a8fcb86027c.SwissProt.fasta
6 sequences; 1,541 total letters
Query= ACIAD0176
Length=163
Score E
Sequences producing significant alignments: (Bits) Value
P0AC52 Zinc uptake regulation protein [Shigella flexneri] 112 4e-36
P0AC51 Zinc uptake regulation protein [Escherichia coli (strain K... 112 4e-36
P0A3E5 Ferric uptake regulation protein [Bordetella parapertussis... 34.7 1e-06
P0A3E4 Ferric uptake regulation protein [Bordetella bronchiseptic... 34.7 1e-06
P0A3E3 Ferric uptake regulation protein [Bordetella pertussis (st... 34.7 1e-06
Q03653 Protein EFR3 [Saccharomyces cerevisiae (strain ATCC 204508... 34.3 3e-06
>P0AC52 Zinc uptake regulation protein [Shigella flexneri]
Length=171
Score = 112 bits (281), Expect = 4e-36
Identities = 59/138 (43%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query 25 LAEAESLCAATGARLTPLRKEVLGLILNASGPVGAYDLLAKIKSDTDRPAAPPTVYRTLD 84
LA+AE +CA RLTP R EVL L+ G + AYDLL ++ + + A PPTVYR LD
Sbjct 10 LAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLR-EAEPQAKPPTVYRALD 68
Query 85 FLLEKGLIHRLTSINAYIPC-CHPREGHQAAFLICTECHVVKEASSEGLMNQLNQLAKSD 143
FLLE+G +H++ S N+Y+ C + H +A IC C VKE +EG+ + ++ LA
Sbjct 69 FLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKM 128
Query 144 QFIAQHTIIEISGKCQQC 161
F +H +IE G C C
Sbjct 129 GFALRHNVIEAHGLCAAC 146
>P0AC51 Zinc uptake regulation protein [Escherichia coli (strain
K12)]
Length=171
Score = 112 bits (281), Expect = 4e-36
Identities = 59/138 (43%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query 25 LAEAESLCAATGARLTPLRKEVLGLILNASGPVGAYDLLAKIKSDTDRPAAPPTVYRTLD 84
LA+AE +CA RLTP R EVL L+ G + AYDLL ++ + + A PPTVYR LD
Sbjct 10 LAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLR-EAEPQAKPPTVYRALD 68
Query 85 FLLEKGLIHRLTSINAYIPC-CHPREGHQAAFLICTECHVVKEASSEGLMNQLNQLAKSD 143
FLLE+G +H++ S N+Y+ C + H +A IC C VKE +EG+ + ++ LA
Sbjct 69 FLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKM 128
Query 144 QFIAQHTIIEISGKCQQC 161
F +H +IE G C C
Sbjct 129 GFALRHNVIEAHGLCAAC 146
>P0A3E5 Ferric uptake regulation protein [Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253)]
Length=139
Score = 34.7 bits (78), Expect = 1e-06
Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)
Query 78 TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN 137
TVYR L + G++ R + + +G LICT C V E S + +
Sbjct 53 TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY 111
Query 138 QLAKSDQFIAQHTIIEISGKCQQCK 162
++AK + F+ + + + G C C+
Sbjct 112 KVAKDNGFVLESHAMVLYGICGNCQ 136
>P0A3E4 Ferric uptake regulation protein [Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50)]
Length=139
Score = 34.7 bits (78), Expect = 1e-06
Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)
Query 78 TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN 137
TVYR L + G++ R + + +G LICT C V E S + +
Sbjct 53 TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY 111
Query 138 QLAKSDQFIAQHTIIEISGKCQQCK 162
++AK + F+ + + + G C C+
Sbjct 112 KVAKDNGFVLESHAMVLYGICGNCQ 136
>P0A3E3 Ferric uptake regulation protein [Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=139
Score = 34.7 bits (78), Expect = 1e-06
Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)
Query 78 TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN 137
TVYR L + G++ R + + +G LICT C V E S + +
Sbjct 53 TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY 111
Query 138 QLAKSDQFIAQHTIIEISGKCQQCK 162
++AK + F+ + + + G C C+
Sbjct 112 KVAKDNGFVLESHAMVLYGICGNCQ 136
>Q03653 Protein EFR3 [Saccharomyces cerevisiae (strain ATCC 204508
/ S288c)]
Length=782
Score = 34.3 bits (77), Expect = 3e-06
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query 60 YDLLAKIKSDTDRPAAPPTVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICT 119
Y+LL K+KSDT + V +DFL+E + S+ +I H + H +IC
Sbjct 383 YELLLKLKSDTVKDVEKNAVVEDIDFLVEH-ITQPSISLELFIDLAHYMKNH----IICL 437
Query 120 ECHVVKEASSEGLMNQLNQLAK 141
V E S L ++L L +
Sbjct 438 FNIVETEVPSSILFSKLYSLLR 459
Lambda K H a alpha
0.324 0.135 0.417 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 174590
Database: 4501f3679ff1afb3eb0b6a8fcb86027c.SwissProt.fasta
Posted date: May 10, 2024 12:24 AM
Number of letters in database: 1,541
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40