BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 8ff4d7ca085fc2e71b3ce75e3758f14a.SwissProt.fasta
16 sequences; 3,203 total letters
Query= ACIAD0196
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
P75952 HTH-type transcriptional repressor ComR [Escherichia coli ... 132 6e-42
P39334 HTH-type transcriptional repressor BdcR [Escherichia coli ... 79.3 9e-22
Q7WY76 Uncharacterized HTH-type transcriptional regulator YezE [B... 67.0 3e-17
Q8NQ97 HTH-type transcriptional repressor AcnR [Corynebacterium g... 54.3 1e-12
Q8FTA6 HTH-type transcriptional repressor AcnR [Corynebacterium e... 45.1 2e-09
Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional r... 38.1 4e-07
Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional r... 38.1 4e-07
Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional r... 37.0 1e-06
Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional r... 37.0 1e-06
Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional r... 37.0 1e-06
A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional r... 37.0 1e-06
Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional r... 37.0 1e-06
P40950 Uncharacterized HTH-type transcriptional regulator YuxN [B... 35.8 4e-06
P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrh... 34.3 9e-06
P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli (s... 34.3 1e-05
>P75952 HTH-type transcriptional repressor ComR [Escherichia coli
(strain K12)]
Length=210
Score = 132 bits (332), Expect = 6e-42
Identities = 72/203 (35%), Positives = 111/203 (55%), Gaps = 9/203 (4%)
Query 25 QAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATL 84
Q VKK RGRPK FD AAL++AM LFW+HGYEATS+ DL + G AP+LY+ F +K L
Sbjct 7 QCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGL 66
Query 85 FYKSIDYYL-----AHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVA 139
F +D Y+ HEA ++F + K+ A Y N + P+GC ++
Sbjct 67 FRAVLDRYIDRFAAKHEA----QLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINN 122
Query 140 TMNCSESTQDVQQNLLAKRLKTKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLT 199
S + D+ L ++ + L Q L + + G++P H + + +F +IQG++
Sbjct 123 CTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCIIQGMS 182
Query 200 MQARDGASLAQLTKVVEHAMRAW 222
+ AR+GASL +L ++ +R W
Sbjct 183 ISAREGASLEKLMQIAGTTLRLW 205
>P39334 HTH-type transcriptional repressor BdcR [Escherichia coli
(strain K12)]
Length=197
Score = 79.3 bits (194), Expect = 9e-22
Identities = 51/180 (28%), Positives = 86/180 (48%), Gaps = 10/180 (6%)
Query 32 GRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDY 91
GRP+ F + A+ A +LF + G++A S+ ++T LGI PSLY+ FG KA LF + ++
Sbjct 11 GRPRRFAPEQAISAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNE 70
Query 92 YLAHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDVQ 151
Y+ EA P+ + + + + R Q +GCM++ + +D+
Sbjct 71 YVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIA 130
Query 152 QNLLAKRLKTKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQL 211
T + R P+ + +TDF TV+ GL+ +AR+G S+ QL
Sbjct 131 VQYYHAAETTIYDYIARRH--------PQR--AQCVTDFMSTVMSGLSAKAREGHSIEQL 180
>Q7WY76 Uncharacterized HTH-type transcriptional regulator YezE
[Bacillus subtilis (strain 168)]
Length=194
Score = 67.0 bits (162), Expect = 3e-17
Identities = 46/186 (25%), Positives = 82/186 (44%), Gaps = 1/186 (1%)
Query 32 GRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDY 91
GR K FD L +A+ +F E+GYE TS+ DL LGI SLY T+G K LF ++
Sbjct 2 GRNKEFDTALVLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSLYDTYGTKRDLFLSAVKS 61
Query 92 YLAHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDVQ 151
YL + + E + + A + +N L P + C ++ + + ++
Sbjct 62 YLEGKNAAVMERLEAPGSVKEAIRDIFQEGVNALRDPERAKACYIINSAIEQIPHDPELA 121
Query 152 QNLLAKRLKTKEKLMQRLQKGISEGDL-PEHIPLEAMTDFYCTVIQGLTMQARDGASLAQ 210
+ + + ++ L + +G+L E + A+ + LT A+ A + +
Sbjct 122 RYFERQSKQLEDAFYHGLLRAKDQGELNGEDTDISALARYLNQSRLSLTFIAKVTADMDR 181
Query 211 LTKVVE 216
L V+
Sbjct 182 LQDHVD 187
>Q8NQ97 HTH-type transcriptional repressor AcnR [Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 /
JCM 1318 / LMG 3730 / NCIMB 10025)]
Length=188
Score = 54.3 bits (129), Expect = 1e-12
Identities = 44/178 (25%), Positives = 79/178 (44%), Gaps = 14/178 (8%)
Query 40 QAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEACP 99
Q LE A F EHGYE ++ L + G + +++ FGDK LF LA E
Sbjct 14 QEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLA-----LARE--- 65
Query 100 IDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDV-QQNLLAKR 158
+ A+ A + E + + + +L+ + M V ++ T V + + +
Sbjct 66 -----DAARMAEVVSENGLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQ 120
Query 159 LKTKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVE 216
E + RL + + +G + +P+E + F TV+ G + GAS L++V++
Sbjct 121 SVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLDGFISRLATGASTEGLSEVLD 178
>Q8FTA6 HTH-type transcriptional repressor AcnR [Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189
/ NBRC 100395)]
Length=188
Score = 45.1 bits (105), Expect = 2e-09
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 14/178 (8%)
Query 40 QAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEACP 99
Q LE A F EHGYE ++ L + G + +++ FGDK LF LA E
Sbjct 14 QEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKEKLFLA-----LARE--- 65
Query 100 IDRMFEQAKTARIAFELYMYDNLNRLLQ-PNKPSGCMLVVATMNCSESTQDVQQNLLAKR 158
+ A+ A E + + + +L+ P + + + + + + +
Sbjct 66 -----DAARMAETVSENGLVEVMRGMLEDPERYDWLSIRLEISKQLRTDPEFRAKWTDHQ 120
Query 159 LKTKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVE 216
E + RL + +G + +P+E + + TV+ G + GAS L++V++
Sbjct 121 SVLDEAVRVRLARNADKGRMRTDVPIEVLHLYLETVMDGFISRLATGASTEGLSEVLD 178
>Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)]
Length=185
Score = 38.1 bits (87), Expect = 4e-07
Identities = 15/48 (31%), Positives = 32/48 (67%), Gaps = 0/48 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSID 90
++ A+ LF E GY+ T+++D+++ + I SLY + +K ++ KS++
Sbjct 6 IDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVE 53
>Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis]
Length=185
Score = 38.1 bits (87), Expect = 4e-07
Identities = 15/48 (31%), Positives = 32/48 (67%), Gaps = 0/48 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSID 90
++ A+ LF E GY+ T+++D+++ + I SLY + +K ++ KS++
Sbjct 6 IDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVE 53
>Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain MRSA252)]
Length=186
Score = 37.0 bits (84), Expect = 1e-06
Identities = 15/47 (32%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSI 89
++ A+ LF E GY+ T+++D+ + + I SLY F K +++ +S+
Sbjct 6 IDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 52
>Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain N315)]
Length=186
Score = 37.0 bits (84), Expect = 1e-06
Identities = 15/47 (32%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSI 89
++ A+ LF E GY+ T+++D+ + + I SLY F K +++ +S+
Sbjct 6 IDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 52
>Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Mu50 / ATCC
700699)]
Length=186
Score = 37.0 bits (84), Expect = 1e-06
Identities = 15/47 (32%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSI 89
++ A+ LF E GY+ T+++D+ + + I SLY F K +++ +S+
Sbjct 6 IDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 52
>A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Newman)]
Length=186
Score = 37.0 bits (84), Expect = 1e-06
Identities = 15/47 (32%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSI 89
++ A+ LF E GY+ T+++D+ + + I SLY F K +++ +S+
Sbjct 6 IDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 52
>Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain NCTC 8325 /
PS 47)]
Length=186
Score = 37.0 bits (84), Expect = 1e-06
Identities = 15/47 (32%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 43 LEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSI 89
++ A+ LF E GY+ T+++D+ + + I SLY F K +++ +S+
Sbjct 6 IDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 52
>P40950 Uncharacterized HTH-type transcriptional regulator YuxN
[Bacillus subtilis (strain 168)]
Length=291
Score = 35.8 bits (81), Expect = 4e-06
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query 39 EQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEAC 98
E+ +E A+ LF + GY +TS+ ++ + I+ + Y F K L ++YY
Sbjct 5 EKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYDKTFT 64
Query 99 PIDRMFEQAKTARIAFE---LYMYDNL 122
I + + + R A+ +Y+N+
Sbjct 65 RILNIKTKGDSPRTAYRKQLTVLYENI 91
>P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrhoeae]
Length=210
Score = 34.3 bits (77), Expect = 9e-06
Identities = 35/159 (22%), Positives = 66/159 (42%), Gaps = 10/159 (6%)
Query 46 AMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEACPIDRMFE 105
A+ F+ G TS+N++ Q G+T +LY F +K LF D I+
Sbjct 19 ALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLF----DALFQRICDDIENCIA 74
Query 106 Q--AKTARIAFELYMYDNLN--RLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLKT 161
Q A ++ ++ + L+ LQ N + + C + Q+ +A++ +
Sbjct 75 QDAADAEGGSWTVFRHTLLHFFERLQSNDIHYKFHNILFLKCEHTEQNAAVIAIARKHQA 134
Query 162 --KEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGL 198
+EK+ L + + DL + + E F + + GL
Sbjct 135 IWREKITAVLTEAVENQDLADDLDKETAVIFIKSTLDGL 173
Score = 17.3 bits (33), Expect = 3.3
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 180 EHIPLEAMTDFY 191
EH+ L A+ FY
Sbjct 13 EHLMLAALETFY 24
>P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli
(strain K12)]
Length=220
Score = 34.3 bits (77), Expect = 1e-05
Identities = 15/46 (33%), Positives = 25/46 (54%), Gaps = 0/46 (0%)
Query 40 QAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGDKATLF 85
Q +E A+ F +HG T++ND+ +T ++Y F +K LF
Sbjct 14 QELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLF 59
Lambda K H a alpha
0.323 0.134 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 499785
Database: 8ff4d7ca085fc2e71b3ce75e3758f14a.SwissProt.fasta
Posted date: Jun 2, 2024 11:45 AM
Number of letters in database: 3,203
Number of sequences in database: 16
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
