BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 60b3e9093a45c0db194bbbe63053555a.SwissProt.fasta
           1 sequences; 1,401 total letters



Query= ACIAD0212

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q8RA32 DNA polymerase III PolC-type [Caldanaerobacter subterraneu...  35.8    9e-07


>Q8RA32 DNA polymerase III PolC-type [Caldanaerobacter subterraneus 
subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 
100824 / MB4)]
Length=1401

 Score = 35.8 bits (81),  Expect = 9e-07
 Identities = 22/94 (23%), Positives = 46/94 (49%), Gaps = 10/94 (11%)

Query  53   ETIAQTFDLSALQHHKAMSHADSHMQHMPNMLEKAKSASSHDHHDLNHQCQYCTVYGHLI  112
            +T+A+ F++  L HH+A+  A +  +    MLEK +        ++N           ++
Sbjct  516  DTLAEFFEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSEIN----------SVL  565

Query  113  LPPELDVQEILVRIQVRLLAFQQAFRHVYYALQR  146
            +  E+DV+++ V     L+  Q+  R++Y  + R
Sbjct  566  MEREVDVKKLPVYHVTILVKDQKGLRNLYEIISR  599


 Score = 17.3 bits (33),  Expect = 1.0
 Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)

Query  130   LLAFQQAFRHVYY  142
             ++AF+ A+  VYY
Sbjct  1238  IMAFRIAYFKVYY  1250


 Score = 16.9 bits (32),  Expect = 1.4
 Identities = 5/9 (56%), Positives = 7/9 (78%), Gaps = 0/9 (0%)

Query  150  LPQGRAPPV  158
            +P+G  PPV
Sbjct  774  IPEGTFPPV  782


 Score = 15.8 bits (29),  Expect = 3.2
 Identities = 5/17 (29%), Positives = 9/17 (53%), Gaps = 0/17 (0%)

Query  94    DHHDLNHQCQYCTVYGH  110
             D+H L+ +     + GH
Sbjct  1043  DYHSLSGKLLKLDILGH  1059



Lambda      K        H        a         alpha
   0.333    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175104


  Database: 60b3e9093a45c0db194bbbe63053555a.SwissProt.fasta
    Posted date:  May 20, 2024  11:32 PM
  Number of letters in database: 1,401
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40