BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1d91f0c519e9ebc09dca9ce259f2ffff.SwissProt.fasta
10 sequences; 1,246 total letters
Query= ACIAD0222
Length=118
Score E
Sequences producing significant alignments: (Bits) Value
O30825 RutC family protein HD_0322 [Haemophilus ducreyi (strain 3... 94.4 3e-30
P71394 RutC family protein HI_1627 [Haemophilus influenzae (strai... 81.3 4e-25
P0AEB9 RutC family protein YoaB [Shigella flexneri] 69.3 2e-20
P0AEB7 RutC family protein YoaB [Escherichia coli (strain K12)] 69.3 2e-20
P0AEB8 RutC family protein YoaB [Escherichia coli O6:H1 (strain C... 69.3 2e-20
B7LFC0 3-aminoacrylate deaminase RutC [Escherichia coli (strain 5... 43.1 3e-10
C8TNC0 3-aminoacrylate deaminase RutC [Escherichia coli O26:H11 (... 43.1 3e-10
C8UMM6 3-aminoacrylate deaminase RutC [Escherichia coli O111:H- (... 43.1 3e-10
O66689 RutC family protein aq_364 [Aquifex aeolicus (strain VF5)] 40.8 2e-09
O43003 Protein mmf1, mitochondrial [Schizosaccharomyces pombe (st... 35.4 3e-07
>O30825 RutC family protein HD_0322 [Haemophilus ducreyi (strain
35000HP / ATCC 700724)]
Length=117
Score = 94.4 bits (233), Expect = 3e-30
Identities = 48/112 (43%), Positives = 67/112 (60%), Gaps = 1/112 (1%)
Query 3 VQRIHVEKRFSEIAISGNLVHLAGQLASDTQLDIKGQTQQTLDIIDRFLADAGTDKSHIL 62
+ RI V RFSE+AI + + AGQ+ +D D QTQQ L ID++LA + TDKS IL
Sbjct 2 ITRIDVTNRFSEVAIYNGIAYFAGQVPTDESKDAYQQTQQVLSEIDKYLAKSNTDKSRIL 61
Query 63 SVMIFLKDIEHDYDAMNEIWDAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
++L ++ DY MN WD W A A PR +EA++ P+ VE+ +TA
Sbjct 62 MATVYLANMA-DYTEMNRAWDEWVAPNNAPPRAAIEARLANPNWKVEIVITA 112
>P71394 RutC family protein HI_1627 [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=116
Score = 81.3 bits (199), Expect = 4e-25
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 2/115 (2%)
Query 1 MSVQRIHVEKRFSEIAISGNLVHLAGQLASDT-QLDIKGQTQQTLDIIDRFLADAGTDKS 59
M++QRI R SE++I NL + AGQ+ T + + QT++ L +ID+ LA G++KS
Sbjct 1 MTIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAKIGSNKS 60
Query 60 HILSVMIFLKDIEHDYDAMNEIWDAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
+IL+ IFL D++ DY +N+ WD W + R VEAK+ P VE+ + A
Sbjct 61 NILTAQIFLADMK-DYAQLNQAWDEWVDHVSPPSRATVEAKLADPHWKVEIVIIA 114
>P0AEB9 RutC family protein YoaB [Shigella flexneri]
Length=114
Score = 69.3 bits (168), Expect = 2e-20
Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 2/114 (2%)
Query 1 MSVQRIHVEKRFSEIAISGNLVHLAGQLASDTQLDIKGQTQQTLDIIDRFLADAGTDKSH 60
M++ RI E R+S++ I N ++ G + + D QT TL ID L G++KS
Sbjct 1 MTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKSS 59
Query 61 ILSVMIFLKDIEHDYDAMNEIWDAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
IL IFL D ++D+ AMN+ WDAW A R V+A + P VE+ + A
Sbjct 60 ILDATIFLAD-KNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVA 112
>P0AEB7 RutC family protein YoaB [Escherichia coli (strain K12)]
Length=114
Score = 69.3 bits (168), Expect = 2e-20
Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 2/114 (2%)
Query 1 MSVQRIHVEKRFSEIAISGNLVHLAGQLASDTQLDIKGQTQQTLDIIDRFLADAGTDKSH 60
M++ RI E R+S++ I N ++ G + + D QT TL ID L G++KS
Sbjct 1 MTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKSS 59
Query 61 ILSVMIFLKDIEHDYDAMNEIWDAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
IL IFL D ++D+ AMN+ WDAW A R V+A + P VE+ + A
Sbjct 60 ILDATIFLAD-KNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVA 112
>P0AEB8 RutC family protein YoaB [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=114
Score = 69.3 bits (168), Expect = 2e-20
Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 2/114 (2%)
Query 1 MSVQRIHVEKRFSEIAISGNLVHLAGQLASDTQLDIKGQTQQTLDIIDRFLADAGTDKSH 60
M++ RI E R+S++ I N ++ G + + D QT TL ID L G++KS
Sbjct 1 MTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKSS 59
Query 61 ILSVMIFLKDIEHDYDAMNEIWDAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
IL IFL D ++D+ AMN+ WDAW A R V+A + P VE+ + A
Sbjct 60 ILDATIFLAD-KNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVA 112
>B7LFC0 3-aminoacrylate deaminase RutC [Escherichia coli (strain
55989 / EAEC)]
Length=128
Score = 43.1 bits (100), Expect = 3e-10
Identities = 31/105 (30%), Positives = 57/105 (54%), Gaps = 10/105 (10%)
Query 17 ISGNLVHLAGQLASDTQLDI------KGQTQQTLDIIDRFLADAGTDKSHILSVMIFLKD 70
++ +V+++G LA D ++ K QT+ L+II + + AG + + IF+ D
Sbjct 23 LADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFITD 82
Query 71 IEHDYDAMNEIW-DAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
+ +Y A+NEI+ + + D A R C++ + +PD LVE+ A
Sbjct 83 WK-NYAAINEIYAEFFPGDKPA--RFCIQCGLVKPDALVEIATIA 124
>C8TNC0 3-aminoacrylate deaminase RutC [Escherichia coli O26:H11
(strain 11368 / EHEC)]
Length=128
Score = 43.1 bits (100), Expect = 3e-10
Identities = 31/105 (30%), Positives = 57/105 (54%), Gaps = 10/105 (10%)
Query 17 ISGNLVHLAGQLASDTQLDI------KGQTQQTLDIIDRFLADAGTDKSHILSVMIFLKD 70
++ +V+++G LA D ++ K QT+ L+II + + AG + + IF+ D
Sbjct 23 LADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFITD 82
Query 71 IEHDYDAMNEIW-DAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
+ +Y A+NEI+ + + D A R C++ + +PD LVE+ A
Sbjct 83 WK-NYAAINEIYAEFFPGDKPA--RFCIQCGLVKPDALVEIATIA 124
>C8UMM6 3-aminoacrylate deaminase RutC [Escherichia coli O111:H-
(strain 11128 / EHEC)]
Length=128
Score = 43.1 bits (100), Expect = 3e-10
Identities = 31/105 (30%), Positives = 57/105 (54%), Gaps = 10/105 (10%)
Query 17 ISGNLVHLAGQLASDTQLDI------KGQTQQTLDIIDRFLADAGTDKSHILSVMIFLKD 70
++ +V+++G LA D ++ K QT+ L+II + + AG + + IF+ D
Sbjct 23 LADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFITD 82
Query 71 IEHDYDAMNEIW-DAWCADIQALPRTCVEAKMYRPDVLVEMTVTA 114
+ +Y A+NEI+ + + D A R C++ + +PD LVE+ A
Sbjct 83 WK-NYAAINEIYAEFFPGDKPA--RFCIQCGLVKPDALVEIATIA 124
>O66689 RutC family protein aq_364 [Aquifex aeolicus (strain VF5)]
Length=125
Score = 40.8 bits (94), Expect = 2e-09
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query 12 FSEIAISGNLVHLAGQLASDTQLD--IKGQTQQTLDI---IDRFLADAGTDKSHILSVMI 66
+S+ + ++GQ+ + + ++G +Q + I +D L +AG + +I+ V I
Sbjct 16 YSQAVEVNGFLFISGQIGINPETGKLVEGFKEQVIQIFKNVDAILEEAGLKRENIVKVTI 75
Query 67 FLKDIEHDYDAMNEIWDAWCADIQALP-RTCVEAKMYRPDVLVEMTVTAVK 116
++ DI+ + +NEI++ + D+ P R V K + VE+ + AVK
Sbjct 76 YITDIK-KFKELNEIYEDYFKDVSVKPARVTVGVKELPLNAEVEIEIVAVK 125
>O43003 Protein mmf1, mitochondrial [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=162
Score = 35.4 bits (80), Expect = 3e-07
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (8%)
Query 16 AISGN-LVHLAGQLASDTQLDIKG----QTQQTLDIIDRFLADAGTDKSHILSVMIFLKD 70
AI N +++ +GQ+ I+G QT+Q L + L +AG+ + I+ V IFL D
Sbjct 56 AIKANGVIYCSGQIPVANGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLAD 115
Query 71 IEHDYDAMNEIWDAWCADIQALPRTCVEAK 100
++ D+ A+N+++ D + R+CV K
Sbjct 116 MD-DFAAVNKVYTEVLPDPKP-ARSCVAVK 143
Score = 14.6 bits (26), Expect = 4.1
Identities = 8/23 (35%), Positives = 12/23 (52%), Gaps = 0/23 (0%)
Query 41 QQTLDIIDRFLADAGTDKSHILS 63
QQ+L + RF + K+ I S
Sbjct 22 QQSLRPVPRFFIHKMSTKTPINS 44
Lambda K H a alpha
0.327 0.138 0.413 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 86940
Database: 1d91f0c519e9ebc09dca9ce259f2ffff.SwissProt.fasta
Posted date: Jun 2, 2024 11:20 PM
Number of letters in database: 1,246
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
