BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e2aed217d96d3ca6df081638f203791e.SwissProt.fasta
15 sequences; 4,501 total letters
Query= ACIAD0323
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
P39376 HTH-type transcriptional regulator YjiE [Escherichia coli ... 232 9e-79
Q8X487 HTH domain-truncated transcriptional regulator QseD [Esche... 166 1e-53
P39127 HTH-type transcriptional regulator CitR [Bacillus subtilis... 75.5 4e-19
O34827 Uncharacterized HTH-type transcriptional regulator YkuM [B... 68.2 1e-16
A0T0G2 Probable RuBisCO transcriptional regulator [Phaeodactylum ... 67.4 3e-16
A0T0V5 Probable RuBisCO transcriptional regulator [Thalassiosira ... 65.5 1e-15
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 65.1 2e-15
O68014 HTH-type transcriptional regulator BenM [Acinetobacter bay... 63.5 6e-15
P49518 Probable RuBisCO transcriptional regulator [Trieres chinen... 62.8 1e-14
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 61.6 3e-14
P44418 Hydrogen peroxide-inducible genes activator [Haemophilus i... 60.1 9e-14
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 59.7 1e-13
P52686 SDS degradation transcriptional activation protein [Pseudo... 56.2 2e-12
P71318 Hydrogen peroxide-inducible genes activator [Pectobacteriu... 55.8 2e-12
>P39376 HTH-type transcriptional regulator YjiE [Escherichia coli
(strain K12)]
Length=303
Score = 232 bits (592), Expect = 9e-79
Identities = 118/296 (40%), Positives = 191/296 (65%), Gaps = 3/296 (1%)
Query 2 SLIQNIELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPL 61
+++ NIE KWLYD +TLEK RNF+ AA RN+SQ + SRRI+ LE +G E+FNR+++PL
Sbjct 6 AILHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPL 65
Query 62 QLTEKGKLFVLHARSFLDDFEYNIDKIKG-TDNIRSKVTIASAHSLAGYIFPKILGNLKN 120
QL+E+GK+F R L E N+ +++G +D + K+ IA+AHSL+ + P I+ +
Sbjct 66 QLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPP 125
Query 121 YQEKIFHVEAINVNETVDHLRNGKCDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNHL 180
+ +EAI+V+E VD LR G+ D I SF+D++L+ F ++F ++L+ V A +
Sbjct 126 LFT--WAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRLFESQLFPVCASDEH 183
Query 181 GRPKFSLEDRSLPLMNYTDDSYMGKKVNKFLQDSQSEYFNITFVSSMSILLKDMIKGGFG 240
G F+L PL+NY+ +SYMG+ +N+ L F+ FVSSMS LLK + G G
Sbjct 184 GEALFNLAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALDGCG 243
Query 241 IGWLPDYSIQEELKNNELMIIPLKDSVLSVDIYLYRSSSRLNAASEGLWNFIKAID 296
I WLP+Y+IQ+E+++ +L+++ + V+ + Y YR ++R+N +E W ++ ++
Sbjct 244 IAWLPEYAIQQEIRSGKLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELE 299
>Q8X487 HTH domain-truncated transcriptional regulator QseD [Escherichia
coli O157:H7]
Length=242
Score = 166 bits (419), Expect = 1e-53
Identities = 87/240 (36%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query 58 MSPLQLTEKGKLFVLHARSFLDDFEYNIDKIKG-TDNIRSKVTIASAHSLAGYIFPKILG 116
M+PLQL+E+GK+F R L E N+ +++G +D + K+ IA+AHSL+ + P I+
Sbjct 1 MTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIIS 60
Query 117 NLKNYQEKIFHVEAINVNETVDHLRNGKCDFIASFYDDELMNPQFLCHKIFSAKLYLVTA 176
+ + +EAI+V+E VD LR G+ D I SF+D++L+ F ++F ++L+ V A
Sbjct 61 QMPPLFT--WAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRLFESQLFPVCA 118
Query 177 PNHLGRPKFSLEDRSLPLMNYTDDSYMGKKVNKFLQDSQSEYFNITFVSSMSILLKDMIK 236
+ G F L PL+NY+ +SYMG+ +N+ L F+ FVSSMS LLK +
Sbjct 119 SDEHGEALFDLVQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVAL 178
Query 237 GGFGIGWLPDYSIQEELKNNELMIIPLKDSVLSVDIYLYRSSSRLNAASEGLWNFIKAID 296
G GI WLP+Y+IQ+E+++ +L+++ + V+ + Y YR ++R+N +E W ++ ++
Sbjct 179 DGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELE 238
>P39127 HTH-type transcriptional regulator CitR [Bacillus subtilis
(strain 168)]
Length=291
Score = 75.5 bits (184), Expect = 4e-19
Identities = 60/267 (22%), Positives = 125/267 (47%), Gaps = 21/267 (8%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
++ KWL+ +T KY NF A+ +SQ +++ I+ LE + ++F R+ +QLT++
Sbjct 1 MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKQLEKEISCKLFERKGRQIQLTDE 60
Query 67 GKLFVLHARSFLDDFEYNIDKI-KGTDNIRSKVTIASAHSLAGYIFPKILGNLKNYQEKI 125
G+ ++ +A LDD+E ++ ++ + + +A + +A + P + +K Y
Sbjct 61 GRAYLPYALRLLDDYENSMAELHRVRQGYSQTLQLAVSPLIADTVLPSV---MKRYTAMN 117
Query 126 FHVE-AINVNETVD---HLRNGKCDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNHLG 181
E A+ + E+ + ++ G+ D S ++ + CH ++ + LV P+
Sbjct 118 TETEMAVTIFESAEIASLIKAGEADIGLSCL--KVQSSSLSCHCLYKDPVVLVAPPD--- 172
Query 182 RPKFSLEDRSLPLMNYTDDSYMGKKVNKFLQDSQSEYFNIT--FVSSMSI----LLKDMI 235
K +ED + + + + D +T FV +M + + K I
Sbjct 173 --KRFIEDNEIDAKEVLEQYLLLTHNHPDYWDDLLRQVRMTFPFVRTMKVTQTHITKRFI 230
Query 236 KGGFGIGWLPDYSIQEELKNNELMIIP 262
K G G+ +LP +++ EL +++ IP
Sbjct 231 KEGLGVSFLPLSTVKRELAEKQMIRIP 257
>O34827 Uncharacterized HTH-type transcriptional regulator YkuM
[Bacillus subtilis (strain 168)]
Length=293
Score = 68.2 bits (165), Expect = 1e-16
Identities = 67/281 (24%), Positives = 122/281 (43%), Gaps = 30/281 (11%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
++L+ L+ L+ L + N AA+ +SQ +LS+R+QT+E G ++F R L +T
Sbjct 1 MQLQELHMLVVLAEELNMRKAAERLFVSQPALSQRLQTIEKAWGTKIFLRSQKGLTVTPA 60
Query 67 GKLFVLHARSFL---DDFEYNIDKIKGTDNIRSKVTIASAHSLAGYIFPKILGNLKNYQE 123
G+ + A + NID+++G I + +A A + + PK+ LK Y E
Sbjct 61 GEKIIQFANDVTLEQERIRENIDELEG--EIHGTLKLAVASIIGQHWLPKV---LKTYVE 115
Query 124 KIFHVEAINVNETVDHLRNGKCDFIASFYDDELM------NPQFLCHKIFSAKLYLVTAP 177
K N + + + + S Y+D++ NP++ K YL+T
Sbjct 116 KY-------PNAKISLITGWSSEMLKSLYEDQVHIGIIRGNPEWK-----GRKDYLMTDH 163
Query 178 NHLGRPKFS-LED---RSLPLMNYTDDSYMGKKVNKFLQDSQSEYFNITFVSSMSILLKD 233
+L + S +ED P + + DS +++ + T + K
Sbjct 164 LYLVDTEISCIEDIAHTERPFIQFKSDSTYFQEIQHWWHQKFKTSPKQTILVDQIETCKQ 223
Query 234 MIKGGFGIGWLPDYSIQEELKNNELMIIPLKDSVLSVDIYL 274
M G G LP ++Q E K N++ ++ +K + D +L
Sbjct 224 MALHGIGYAILPSVTLQNEDKVNKMPLLDMKGHPIGRDTWL 264
>A0T0G2 Probable RuBisCO transcriptional regulator [Phaeodactylum
tricornutum (strain CCAP 1055/1)]
Length=307
Score = 67.4 bits (163), Expect = 3e-16
Identities = 54/252 (21%), Positives = 119/252 (47%), Gaps = 8/252 (3%)
Query 22 RNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKGKLFVLHARSFLDDF 81
+NFT AA++ +SQ SLS++I+TLE L + NRE + + LTE GK+F+ ++ L
Sbjct 19 KNFTKAAELLYLSQPSLSKQIKTLEKNLDILLVNRENNKISLTENGKIFLQYSERILALC 78
Query 82 EYNIDKIKGTDN-IRSKVTIASAHSLAGYIFPKILGNL-KNYQEKIFHVEAINVNETVDH 139
E + + N R +T+ ++ ++ Y+ P++L +NY + V+ + +
Sbjct 79 EESCRALIDLKNGERGSLTVGASQTIGTYLMPRVLALFAQNYPQIDLKVQVNSTRIVAKN 138
Query 140 LRNGKCDFIASFYDDEL-MNPQFLCHKIFSAKLYLVTAPNHLGRPKFSLEDRSLPLMNY- 197
+ N + D + L + K + L+ +H K + L +N+
Sbjct 139 ILNREIDIAVVGGEIPLDLKKNLTVEKFVEDEFSLIIPKSHPFANKKIVTKEDLYHLNFI 198
Query 198 --TDDSYMGKKVNKFLQDSQSEYFNITFVSSMSIL--LKDMIKGGFGIGWLPDYSIQEEL 253
+S + K ++ L +Q + + + ++ + +K + G G ++ +I++E+
Sbjct 199 SLNSNSTIRKFIDNILIQNQIDTKQLKIIMQLNSIEAIKTAVSLGQGAAFVSSAAIEKEI 258
Query 254 KNNELMIIPLKD 265
+ + I+ +++
Sbjct 259 ELKTIEILKIEN 270
>A0T0V5 Probable RuBisCO transcriptional regulator [Thalassiosira
pseudonana]
Length=307
Score = 65.5 bits (158), Expect = 1e-15
Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 10/254 (4%)
Query 22 RNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKGKLFVLHARSFLDDF 81
++FT AA++ +SQ SLS++I+TLEN LG + NR + + LTE G +F+ ++ L
Sbjct 20 KSFTQAAEILFVSQPSLSKQIKTLENRLGILLLNRTGNKILLTEAGVVFLQYSERILALC 79
Query 82 EYNIDKIKG-TDNIRSKVTIASAHSLAGYIFPKILGNL-KNYQEKIFHVEAINVNETVDH 139
E + + D R + + ++ ++ Y+ P++L ++Y + H++ +
Sbjct 80 EESCRALNDLKDGERGNLKVGASQTIGAYLMPRVLTLFAQSYPQINLHIDIDSTRIIAKK 139
Query 140 LRNGKCDFIASFYDDEL-MNPQFLCHKIFSAKLYLVTAPNH----LGRPKFSLED-RSLP 193
+ + D D + +L L+ + +H + K S ED L
Sbjct 140 VADRSLDIAVVGGDIPTGLKKNLEIEDFVEDELILIISKSHPFAKKKKKKISKEDLYHLN 199
Query 194 LMNYTDDSYMGKKVNKFL--QDSQSEYFNITFVSSMSILLKDMIKGGFGIGWLPDYSIQE 251
+ +S + K +N L + Q+ FN+ + +K + G G ++ +I++
Sbjct 200 FITLNSNSTIHKFINNILIQNNIQTAQFNVIMELNSIEAIKTAVSLGLGAAFVSSSAIEK 259
Query 252 ELKNNELMIIPLKD 265
EL+ + II +++
Sbjct 260 ELELKTVEIITIEN 273
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 65.1 bits (157), Expect = 2e-15
Identities = 64/301 (21%), Positives = 133/301 (44%), Gaps = 18/301 (6%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
++++ L + + + ++FT A+ +SQ ++S+ I+ LE LG E+F R ++LT+
Sbjct 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDA 60
Query 67 GKLFVLHARSFLDDFEYNIDKIKGTDNI-RSKVTIASAHSLAGYIFPKILGNLK-NYQEK 124
G + A+ + F+ ++ + + V I + FP++LG+ + NY
Sbjct 61 GHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNV 120
Query 125 IFHVEAINVNETVDHLRNGKCDF--IASFYDDELMNPQFLCHKIFSAKLYLVTAPNHLGR 182
F + + + + +G D + ++++ F I L LV P+H
Sbjct 121 TFQLVEDGSIKVQEGVGDGSLDIGVVVLPANEDI----FHSFTIVKETLMLVVHPSHRLA 176
Query 183 PKFSLEDRSL---PLMNYTDDSYMGKKVNKFLQDSQSEYF--NITFVSSMSILLKDMIKG 237
+ + R L P + + +D + N+ + + F +I + +S + +M+
Sbjct 177 DEKECQLRELKDEPFIFFREDFVLH---NRIMTECIKAGFRPHIIYETSQWDFISEMVSA 233
Query 238 GFGIGWLPDYSIQEELKNNELMIIPLKDSVLSVDI-YLYRSSSRLNAASEGLWNFIKAID 296
GIG LP+ I L ++ +IPL D V+ + ++R L+ A+ K+
Sbjct 234 NLGIGLLPE-RICRGLDPEKVKVIPLVDPVIPWHLAIIWRKDRYLSFAARAWLEHTKSYL 292
Query 297 W 297
W
Sbjct 293 W 293
>O68014 HTH-type transcriptional regulator BenM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=304
Score = 63.5 bits (153), Expect = 6e-15
Identities = 62/279 (22%), Positives = 116/279 (42%), Gaps = 19/279 (7%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
+EL+ L + + + ++FT AAD I+Q LSR+IQ LE LG ++ R P++ T +
Sbjct 1 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPE 60
Query 67 GKLFVLHARSFLDDFEYNIDKIKGTDNIRSKVTIASAHSLAGYIFPKILGNLKNYQEKI- 125
G F +A L + + + K ++ + I SL + P+I+ + +
Sbjct 61 GHFFYQYAIKLLSNVDQMVSMTKRIASVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLR 120
Query 126 FHVEAINVNETVDHLRNGKCDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNHLGRPKF 185
+ + + L+ G+ D A F ++ +P + + +L + H P
Sbjct 121 IELYEMGTKAQTEALKEGRID--AGFGRLKISDPAIKRTLLRNERLMVAV---HASHPLN 175
Query 186 SLEDRSLPLMNYTDDSYM----------GKKVNKFLQDSQSEYFNITFVSSMSILLKDMI 235
++D+ + L + D+ + V D E I V + + L ++
Sbjct 176 QMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLAL-GLV 234
Query 236 KGGFGIGWLPDYSIQEELKNNELMIIPLKDSVLSVDIYL 274
G GI +P + +L N L +PL D IY+
Sbjct 235 AAGEGISLVPASTQSIQLFN--LSYVPLLDPDAITPIYI 271
>P49518 Probable RuBisCO transcriptional regulator [Trieres chinensis]
Length=309
Score = 62.8 bits (151), Expect = 1e-14
Identities = 58/269 (22%), Positives = 125/269 (46%), Gaps = 14/269 (5%)
Query 9 LKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKGK 68
L+ L L + ++FT AA++ +SQ SLS++I+TLE+ L + NRE + + LT+ GK
Sbjct 7 LQQLRILKAIATEKSFTRAAEVLFVSQPSLSKQIKTLESRLNISLLNRENNIVSLTQAGK 66
Query 69 LFVLHARSFLDDFEYN---IDKIKGTDNIRSKVTIASAHSLAGYIFPKILGNL-KNYQEK 124
LF+ ++ L E + ++ +K D R + + ++ ++ Y+ P++L +N+ +
Sbjct 67 LFLEYSERILALCEESCRVLNDLKTGD--RGNLIVGASQTIGTYLMPRVLALFAQNHPQI 124
Query 125 IFHVEAINVNETVDHLRNGKCDF-IASFYDDELMNPQFLCHKIFSAKLYLVTAPNH---- 179
V + + + G D + E + + +L L+ +H
Sbjct 125 NIEVHVDSTRKIAKRVLEGDIDIAVVGGNIPEEIEKNLKVEDFVNDELILIIPKSHPFAL 184
Query 180 LGRPKFSLED-RSLPLMNYTDDSYMGKKVNKFLQD--SQSEYFNITFVSSMSILLKDMIK 236
+ K + +D L + +S + K ++ L + + FNI + +K +
Sbjct 185 KKKKKINKDDLYHLNFITLNSNSTIRKLIDNILIQIAFEPKQFNIIMQLNSIEAIKTAVS 244
Query 237 GGFGIGWLPDYSIQEELKNNELMIIPLKD 265
G G ++ +I++E++ + I+ ++D
Sbjct 245 LGLGAAFVSSSAIEKEIELKTIEIVTIED 273
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 61.6 bits (148), Expect = 3e-14
Identities = 49/177 (28%), Positives = 86/177 (49%), Gaps = 9/177 (5%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
+EL+ + T+ K+ +F AA++ N SQ ++S R++ LE LG +F R S LQLT+
Sbjct 1 MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKS-LQLTKA 59
Query 67 GKLFVLHARSFLDDFE---YNIDKIKGTDNIRSKVTIASAHSLAGYIFPKILGN-LKNYQ 122
GKLF L +E +N+ +K + + I + A IFP+IL + L +Y
Sbjct 60 GKLFYERTGDLLMQYEALKHNLSDLK--EEEAGIINIGVSEPTASLIFPEILKDFLMDYP 117
Query 123 EKIFHVEAINVNETVDHLRNGKCDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNH 179
+ +++ + N L +G DF + ++ + H F L ++ + H
Sbjct 118 KITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYY--HPFFYDTLNVIVSDQH 172
>P44418 Hydrogen peroxide-inducible genes activator [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=301
Score = 60.1 bits (144), Expect = 9e-14
Identities = 68/284 (24%), Positives = 123/284 (43%), Gaps = 31/284 (11%)
Query 15 LITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKGKLFVLHA 74
L+ L +Y++F AAD N+SQ +LS +I+ LE+ LG + R + T+ G L V A
Sbjct 9 LVALSEYKHFRRAADSCNVSQPTLSGQIRKLEDELGIILLERTSRKVLFTQSGMLLVDQA 68
Query 75 RSFLDDFEYNIDKIKGTDNIRSKVTIASAH-----SLAGYIFPKILGNLKNY--QEKIFH 127
R+ L + + +K + + K H ++ Y+ P I+ LK ++F
Sbjct 69 RTVLRE----VKLLKEMASNQGKEMTGPLHIGLIPTVGPYLLPYIVPMLKAAFPDLEVFL 124
Query 128 VEAINVNETVDHLRNGK--CDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNHLGRPKF 185
EA ++ ++ L G+ C +A+ + E F+ IF+ K+ L + +H
Sbjct 125 YEA-QTHQLLEQLETGRLDCAIVATVPETE----AFIEVPIFNEKMLLAVSEHHPW---- 175
Query 186 SLEDRSLPLMNYTDDSYMGKKVNKFLQDSQSEYF-------NITFVSSMSILLKDMIKGG 238
++ LP+ + L++ +Y N F ++ L++M+
Sbjct 176 -AQESKLPMNQLNGQEMLMLDDGHCLRNQALDYCFTAGAKENSHFQATSLETLRNMVAAN 234
Query 239 FGIGWLPDYSIQEELKNNELMIIPLKDSVLSVDIYL-YRSSSRL 281
GI ++P+ ++ E + IP S I L YR S L
Sbjct 235 AGITFMPELAVLNEGTRKGVKYIPCYSPEPSRTIALVYRPGSPL 278
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 59.7 bits (143), Expect = 1e-13
Identities = 42/142 (30%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query 7 IELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEK 66
+EL+ L +T+ + ++ + AA+ I+Q LSR+IQ LE LG ++F R P ++TE
Sbjct 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEA 60
Query 67 GKLFVLHARSFLDDFEYNIDKIKGTDNIRSKVTIASAHSLAGYIFPKILGNLKNYQEKIF 126
G F HA L K + + I SL + P+I+ L Q
Sbjct 61 GMFFYQHAVQILTHTAQASSMAKRIATVSQTLRIGYVSSLLYGLLPEII-YLFRQQNPEI 119
Query 127 HVEAI--NVNETVDHLRNGKCD 146
H+E I + ++ L+ GK D
Sbjct 120 HIELIECGTKDQINALKQGKID 141
>P52686 SDS degradation transcriptional activation protein [Pseudomonas
sp. (strain ATCC 19151)]
Length=306
Score = 56.2 bits (134), Expect = 2e-12
Identities = 35/110 (32%), Positives = 57/110 (52%), Gaps = 1/110 (1%)
Query 8 ELKWLYDLITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKG 67
+L+ L + L ++ +F AA+ N+SQ +LSR IQ LEN LG + +R + LT G
Sbjct 3 DLRQLRHFVALAEHGHFARAAEAVNLSQPALSRSIQALENGLGCRLLDRGPRQVSLTAHG 62
Query 68 KLFVLHARSFLDDFEYNIDKIKGTDNIRS-KVTIASAHSLAGYIFPKILG 116
+L + HAR LD + DN+ S ++ + + + P+ LG
Sbjct 63 RLVLEHARRLLDGDRALRSAVSQLDNLGSGELRLGAGPYPGARLVPRALG 112
>P71318 Hydrogen peroxide-inducible genes activator [Pectobacterium
carotovorum subsp. carotovorum]
Length=302
Score = 55.8 bits (133), Expect = 2e-12
Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 19/290 (7%)
Query 15 LITLEKYRNFTMAADMRNISQSSLSRRIQTLENTLGFEVFNREMSPLQLTEKGKLFVLHA 74
L+ L ++R+F AAD ++SQ +LS +I+ LE+ LG + R + T+ G L V A
Sbjct 9 LVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVEQA 68
Query 75 RSFLDDFEYNIDKI-KGTDNIRSKVTIASAHSLAGYIFPKILGNL-KNYQEKIFHVEAIN 132
R+ L + + + + + + + I ++ Y+ P+I+ L + + + ++
Sbjct 69 RTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPQIIPMLHRTFPKLEMYLHEAQ 128
Query 133 VNETVDHLRNGK--CDFIASFYDDELMNPQFLCHKIFSAKLYLVTAPNH--LGRPKFSLE 188
++ + L +GK C +A + E F+ +F + L +H R + ++
Sbjct 129 THQLLAQLDSGKLDCAILAMVKESE----AFIEVPLFDEPMKLAIYQDHPWANRERVAMS 184
Query 189 DRSLPLMNYTDDSY--MGKKVNKFLQDSQSE--YFNITFVSSMSILLKDMIKGGFGIGWL 244
D + + +D + + + Q E +F T + + L++M+ G GI L
Sbjct 185 DLAGEKLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLET----LRNMVAAGSGITLL 240
Query 245 PDYSIQEELKNNELMIIP-LKDSVLSVDIYLYRSSSRLNAASEGLWNFIK 293
P S+ E + + + +P K +YR S L E L + I+
Sbjct 241 PALSVPRERERDGVCYLPCYKPEPKRTIALVYRPGSPLRGRYEQLADTIR 290
Lambda K H a alpha
0.323 0.138 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 971804
Database: e2aed217d96d3ca6df081638f203791e.SwissProt.fasta
Posted date: May 20, 2024 11:21 PM
Number of letters in database: 4,501
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
