Comparative Genomics

ACIAD0362 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 71266f5522f51644614846815edb3716.SwissProt.fasta
           10 sequences; 5,339 total letters



Query= ACIAD0362

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FF45 Type IV pilus assembly ATPase PilB [Acinetobacter baylyi (...  1129    0.0   
P22608 Type IV pilus assembly ATPase PilB [Pseudomonas aeruginosa...  638     0.0   
P45792 Type IV pilus assembly protein TapB [Aeromonas hydrophila]     624     0.0   
P37094 Type IV pilus assembly protein PilF [Neisseria gonorrhoeae]    521     0.0   
Q1D098 Type IV pilus assembly ATPase PilB [Myxococcus xanthus (st...  484     2e-169
P31741 Type II secretion system protein E [Aeromonas hydrophila]      366     3e-124
P31703 Type II secretion system protein E [Pectobacterium carotov...  362     9e-123
Q00512 Type II secretion system protein E [Pseudomonas aeruginosa...  355     5e-120
Q01566 Type II secretion system protein E [Dickeya dadantii (stra...  351     2e-118
P37093 Type II secretion system ATPase E [Vibrio cholerae serotyp...  349     1e-117


>Q6FF45 Type IV pilus assembly ATPase PilB [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=579

 Score = 1129 bits (2919),  Expect = 0.0
 Identities = 579/579 (100%), Positives = 579/579 (100%), Gaps = 0/579 (0%)

Query  1    MISESQGGLMSAFTTPPKFSGFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFS  60
            MISESQGGLMSAFTTPPKFSGFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFS
Sbjct  1    MISESQGGLMSAFTTPPKFSGFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFS  60

Query  61   ISPLTIAEIISLEFGEPLLDLGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSN  120
            ISPLTIAEIISLEFGEPLLDLGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSN
Sbjct  61   ISPLTIAEIISLEFGEPLLDLGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSN  120

Query  121  PTNIEAMDAIRFNSKLKVEPIIVEHDKLERLLSEHFVEETHFNFDTEELDLDVEVDPHTT  180
            PTNIEAMDAIRFNSKLKVEPIIVEHDKLERLLSEHFVEETHFNFDTEELDLDVEVDPHTT
Sbjct  121  PTNIEAMDAIRFNSKLKVEPIIVEHDKLERLLSEHFVEETHFNFDTEELDLDVEVDPHTT  180

Query  181  DDDDEDDKLKDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPP  240
            DDDDEDDKLKDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPP
Sbjct  181  DDDDEDDKLKDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPP  240

Query  241  LQLATRLASRLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRIL  300
            LQLATRLASRLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRIL
Sbjct  241  LQLATRLASRLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRIL  300

Query  301  DPASAMLGIDALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHAN  360
            DPASAMLGIDALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHAN
Sbjct  301  DPASAMLGIDALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHAN  360

Query  361  ISTAEDPVEINLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA  420
            ISTAEDPVEINLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA
Sbjct  361  ISTAEDPVEINLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA  420

Query  421  AQTGHLVMSTLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVP  480
            AQTGHLVMSTLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVP
Sbjct  421  AQTGHLVMSTLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVP  480

Query  481  ERSLLEMGFTPEDLAQPEFQIFEPVGCHDCREGYKGRVGIYEVMKITPEISKIIMEDGNA  540
            ERSLLEMGFTPEDLAQPEFQIFEPVGCHDCREGYKGRVGIYEVMKITPEISKIIMEDGNA
Sbjct  481  ERSLLEMGFTPEDLAQPEFQIFEPVGCHDCREGYKGRVGIYEVMKITPEISKIIMEDGNA  540

Query  541  LEIAATAETLGFNNLRRSGLKKVMQGVTSLQEINRVTSE  579
            LEIAATAETLGFNNLRRSGLKKVMQGVTSLQEINRVTSE
Sbjct  541  LEIAATAETLGFNNLRRSGLKKVMQGVTSLQEINRVTSE  579


>P22608 Type IV pilus assembly ATPase PilB [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=566

 Score = 638 bits (1646),  Expect = 0.0
 Identities = 324/564 (57%), Positives = 436/564 (77%), Gaps = 5/564 (1%)

Query  18   KFSGFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFSISPLTIAEIISLEFGEP  77
            + SG  R+LV+   ++ +   QA  +A++ K  +V +L+ +  +S L +AE+ + +FG  
Sbjct  6    QLSGLSRQLVQANLLDEKTAVQAQAQAQRNKLSLVTHLVQSKLVSGLALAELSAEQFGIA  65

Query  78   LLDLGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSNPTNIEAMDAIRFNSKLK  137
              DL   D   F +D I EKL++++R++PL  RG+ L+V  S+P N +A++ ++F++ L 
Sbjct  66   YCDLNSLDKESFPRDAISEKLVRQHRVIPLWRRGNKLFVGISDPANHQAINDVQFSTGLT  125

Query  138  VEPIIVEHDKLERLLSEHFVEETHFNFDTEELDLDVEVDPHTTDDDDEDDKLK--DEAPI  195
             E I+VE DKL   + + F   T      +++DL+  +D  + D   ++D     D+AP+
Sbjct  126  TEAILVEDDKLGLAIDKLFESATDGLAGLDDVDLE-GLDIGSADKSTQEDASAEADDAPV  184

Query  196  VKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRLKVMS  255
            V+++NK+L+DAI+  +SDLHFEPYEK YRVR+R DG+L  +A PP+QLA+R+++RLKVM+
Sbjct  185  VRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRFRTDGMLHEVAKPPIQLASRISARLKVMA  244

Query  256  QMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYE  315
             +DISE+R PQDGRIK+++SK+K+IDFRVN+LPTL+GEKIV+RILD +SA +GIDALGYE
Sbjct  245  GLDISERRKPQDGRIKMRVSKTKSIDFRVNTLPTLWGEKIVMRILDSSSAQMGIDALGYE  304

Query  316  PEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEINLEGV  375
             +QK L++ AL +PQGM+L+TGPTGSGKTVSLYTGLNILNT   NISTAEDPVEINLEG+
Sbjct  305  EDQKELYLAALKQPQGMILVTGPTGSGKTVSLYTGLNILNTTDINISTAEDPVEINLEGI  364

Query  376  NQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNN  435
            NQVNVNP+ G+ F+ ALR+FLRQDPD+IMVGEIRDLETAEIAIKAAQTGH+VMSTLHTN+
Sbjct  365  NQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNS  424

Query  436  AAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLLEMGFTPEDLA  495
            AAETLTRL NMGV +FN+ATSVNL+IAQRLAR+LCS CK+  +VP  +LL  GF PED  
Sbjct  425  AAETLTRLLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHEVPRETLLHEGF-PEDKI  483

Query  496  QPEFQIFEPVGCHDCREGYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETLGFNNL  555
               F+++ PVGC  C+ GYKGRVGIYEV+K TP + +IIME+GN++EIA  A   GFN+L
Sbjct  484  -GTFKLYSPVGCDHCKNGYKGRVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDL  542

Query  556  RRSGLKKVMQGVTSLQEINRVTSE  579
            R SGL K MQG+TSL+E+NRVT +
Sbjct  543  RTSGLLKAMQGITSLEEVNRVTKD  566


>P45792 Type IV pilus assembly protein TapB [Aeromonas hydrophila]
Length=568

 Score = 624 bits (1608),  Expect = 0.0
 Identities = 315/563 (56%), Positives = 422/563 (75%), Gaps = 6/563 (1%)

Query  20   SGFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFSISPLTIAEIISLEFGEPLL  79
            SG    L     ++  + Q+ L +AK  ++  V +LI+N  +    +A+   LE+G PLL
Sbjct  7    SGLALSLAASSLLSESDSQRYLSQAKAQRKPFVTFLIENEILDSKALADFCELEYGVPLL  66

Query  80   DLGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSNPTNIEAMDAIRFNSKLKVE  139
            DL  FD A   +  +++KLI+K+ ++P+  +GH LY+A S+PTN+ A++   F+  L  E
Sbjct  67   DLAAFDLAEIPQKYLNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTE  126

Query  140  PIIVEHDKLERLLSEHFVEETHFNFDTEELD----LDVEVDPHTTDDDDEDDKLKDEAPI  195
             ++VE +KL   + +  +E        E++D     ++EV    +  D+  +   D+API
Sbjct  127  ALLVEENKLTTAIGK-LLESDQDALGMEDIDESEISELEVSDENSRLDESVNTTDDDAPI  185

Query  196  VKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRLKVMS  255
            VKYINK+++DAI+  ASDLHFEPYE  YR+R+R+DG+L  IATPP+ LA R ++RLKVM+
Sbjct  186  VKYINKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFSARLKVMA  245

Query  256  QMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYE  315
            ++DI+E+R+PQDGRIKLK+S++K++D RVN+LPT++GEKIV+R+LD ++A L I+ LG++
Sbjct  246  RLDIAERRLPQDGRIKLKLSRNKSMDMRVNTLPTMWGEKIVIRLLDSSAARLNIEQLGFD  305

Query  316  PEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEINLEGV  375
              QKA ++ AL+KPQGM+L+TGPTGSGKTVSLYTGLNILNT   NISTAEDPVEINL GV
Sbjct  306  DRQKAQYLRALSKPQGMILVTGPTGSGKTVSLYTGLNILNTTEVNISTAEDPVEINLPGV  365

Query  376  NQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNN  435
            NQV VNPK GLTFA+ALRSFLRQDPD++MVGEIRDLETAEIAIKAAQTGHLV+STLHTN+
Sbjct  366  NQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNS  425

Query  436  AAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLLEMGFTPEDLA  495
            AAETLTR+ NMGV +FNIA+SV L++AQRLAR+LC  CK P  VPE  LLE+GFT + LA
Sbjct  426  AAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFTQQQLA  485

Query  496  QPEFQIFEPVGCHDCREGYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETLGFNNL  555
                ++F+PVGC DC  GYKGRVGIYE+M ++  I+K+IM+  N+L+IAA A+  G   L
Sbjct  486  -AGLRLFKPVGCKDCSGGYKGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTL  544

Query  556  RRSGLKKVMQGVTSLQEINRVTS  578
            R SGL+K   GVTSL EINRVT+
Sbjct  545  RISGLEKARIGVTSLAEINRVTT  567


>P37094 Type IV pilus assembly protein PilF [Neisseria gonorrhoeae]
Length=558

 Score = 521 bits (1342),  Expect = 0.0
 Identities = 283/562 (50%), Positives = 395/562 (70%), Gaps = 10/562 (2%)

Query  21   GFIRRLVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFSISPLTIAEIISLEFGEPLLD  80
            G +R LV+   V  +  +    +++  K+ ++P L  +  ISP ++A +I+  F   +LD
Sbjct  4    GLLRILVQNQVVTVEQAEHYYNESQAGKE-VLPMLFSDGVISPKSLAALIARVFSYSILD  62

Query  81   LGVFDPALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSNPTNIEAMDAIRFNSKLKVEP  140
            L  +     L   + E+ + ++  +P+  RG  ++ A S+PT +  +      + + VE 
Sbjct  63   LRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSDPTQMPQIQKTVSAAGIAVEL  122

Query  141  IIVEHDKLERLLSEHFVEETHFNFDTEELDLDVEVDPHTTDDDDEDDKLKDEAPIVKYIN  200
            +IVE D+L  LL   +V     +   E  +   E + HT   D+E+    ++ P+ ++I+
Sbjct  123  VIVEDDQLAGLLD--WVGSRSTSLLQELGEGQEEEESHTLYIDNEE---AEDGPVPRFIH  177

Query  201  KLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRLKVMSQMDIS  260
            K L DA+R  ASD+HFE YE + R+R+RVDG LR +  PP+ +  +LASR+KVMS++DIS
Sbjct  178  KTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPIAVRGQLASRIKVMSRLDIS  237

Query  261  EKRVPQDGRIKLKMSKS-KTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYEPEQK  319
            EKR+PQDGR++L   K  K +DFRV++LPTLFGEK+V+RIL+  +A L ID LG+EP QK
Sbjct  238  EKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMRILNSDAASLNIDQLGFEPFQK  297

Query  320  ALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEINLEGVNQVN  379
             L +EA+++P GM+L+TGPTGSGKTVSLYT LNILNTE  NI+TAEDP EINL G+NQVN
Sbjct  298  KLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNTESVNIATAEDPAEINLPGINQVN  357

Query  380  VNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNNAAET  439
            VN K GLTFAAAL+SFLRQDPDIIMVGEIRDLETA+IAIKAAQTGH+V STLHTNNA  T
Sbjct  358  VNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETADIAIKAAQTGHMVFSTLHTNNAPAT  417

Query  440  LTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLL-EMGFTPEDLAQPE  498
            L+R+ NMGVA FNIA+SV+L++AQRL RRLCS CK+ ++ P  S L E+GFT EDLA+ +
Sbjct  418  LSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSSCKQEVERPSASALKEVGFTDEDLAK-D  476

Query  499  FQIFEPVGCHDCR-EGYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETLGFNNLRR  557
            ++++  VGC  CR +GYKGR G+YEVM I+ E+ ++IM +G  + I   A   G  +LRR
Sbjct  477  WKLYGAVGCDRCRGQGYKGRAGVYEVMPISEEMQRVIMNNGTEVGILDVAYKEGMVDLRR  536

Query  558  SGLKKVMQGVTSLQEINRVTSE  579
            +G+ K+MQG+TSL+E+   T++
Sbjct  537  AGILKIMQGITSLEEVTANTND  558


>Q1D098 Type IV pilus assembly ATPase PilB [Myxococcus xanthus 
(strain DK1622)]
Length=566

 Score = 484 bits (1246),  Expect = 2e-169
 Identities = 245/551 (44%), Positives = 371/551 (67%), Gaps = 5/551 (1%)

Query  26   LVEEGYVNAQNMQQALEKAKKFKQDIVPYLIDNFSISPLTIAEIISLEFGEPLLDLGVFD  85
            LV E  ++ Q +++A E+ +K    I   L+   +I    + + +S ++G P ++L  FD
Sbjct  9    LVRENLISVQQLRKAQEEQQKNGTRIGTALVKTGAIEESKLTDFLSKQYGVPAINLKDFD  68

Query  86   PALFLKDKIDEKLIQKYRIMPLVHRGHVLYVATSNPTNIEAMDAIRFNSKLKVEPIIVEH  145
                +   + +++ +K+ ++P+   G  L VA  +P+NI A+D ++F +   +E ++   
Sbjct  69   VEPDIIKLVPKEVAEKHLVVPVNRAGPSLIVAMCDPSNIFAVDDLKFLTGYNIETVVASE  128

Query  146  DKLERLLSEHFVEETHFNFD-TEELDLDVEVDPHTTDDDDEDDKLKDEAPIVKYINKLLI  204
              +   +  ++ E+     D   ++  D+EV    T++ DE  K  D+AP+VK +N +L+
Sbjct  129  VSIREAIERYYAEKGPSLEDIVGDVGDDIEVTKEETENIDEMAKAADDAPVVKLVNLILM  188

Query  205  DAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRLKVMSQMDISEKRV  264
            DAI+  ASD+H EPYEK +RVR+R+DGV+  +  PP++L   + SRLK+M+ +DISE+R+
Sbjct  189  DAIKKRASDIHVEPYEKDFRVRFRIDGVMYEVMRPPMKLRNAITSRLKIMASLDISERRL  248

Query  265  PQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYEPEQKALFME  324
            PQDGRIK+KM   K +DFRV+  PTLFGEK+V+R+LD ++  L +  LG++ +  A F E
Sbjct  249  PQDGRIKIKMGGGKEMDFRVSVCPTLFGEKVVMRLLDKSNLQLDMTKLGFDAQPLAWFKE  308

Query  325  ALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEINLEGVNQVNVNPKV  384
            A+++P GM+L+TGPTGSGKT +LY+ L+ LN    NI TAEDPVE N  G+NQV ++  +
Sbjct  309  AIDRPYGMVLVTGPTGSGKTTTLYSALSSLNGLDTNICTAEDPVEFNFAGINQVQMHDDI  368

Query  385  GLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNNAAETLTRLR  444
            GL FAAALRSFLRQDPDIIM+GEIRD ETAEI +KAA TGHLV+STLHTN+A  T++RL 
Sbjct  369  GLNFAAALRSFLRQDPDIIMIGEIRDFETAEIGVKAALTGHLVLSTLHTNDAPGTVSRLL  428

Query  445  NMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQ-VPERSLLEMGFTPEDLAQPEFQIFE  503
            NMG+  F +  S+NL++AQRLARRLC  CK+P + V E++L++ G  P+ +    F ++E
Sbjct  429  NMGIEPFLVTASLNLILAQRLARRLCPACKKPAENVDEQALIDAGVPPDKIG--TFTMYE  486

Query  504  PVGCHDCRE-GYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETLGFNNLRRSGLKK  562
             VGC DC + GY+GRV IYEVM     + ++++   +A E+   A  LG ++LR SGL+K
Sbjct  487  KVGCRDCNDRGYRGRVAIYEVMPFWDGLKELVINGASAAELKQEAIRLGMSSLRMSGLRK  546

Query  563  VMQGVTSLQEI  573
            +M G T+L+E+
Sbjct  547  MMDGATTLEEV  557


>P31741 Type II secretion system protein E [Aeromonas hydrophila]
Length=501

 Score = 366 bits (939),  Expect = 3e-124
 Identities = 203/449 (45%), Positives = 292/449 (65%), Gaps = 26/449 (6%)

Query  147  KLERLLSEHFVE--ETHFNFDTEEL-----DLDVEVD--------PHTTDDDDEDDKLKD  191
            ++E+L S+ F E    H+  D+ E      DL  E+D        P + D  D DD    
Sbjct  62   EVEQLGSDEFEELLMAHYQRDSSEARQLMEDLGNEMDFFALAEELPQSEDLLDADD----  117

Query  192  EAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRL  251
            +API++ IN +L +AI+  ASD+H E +E+   +R+R+DGVLR I  P  +LA+ L SR+
Sbjct  118  DAPIIRLINAMLSEAIKEEASDIHIETFERVLVIRFRIDGVLREILRPHRKLASLLVSRI  177

Query  252  KVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDA  311
            KVMS+MDI+EKRVPQDGRI L++   + +D RV+++P+ +GE++VLR+LD  +  L +  
Sbjct  178  KVMSRMDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQ  236

Query  312  LGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEIN  371
            LG     + +  E + KP G++L+TGPTGSGK+ +LY  L+ +N+   NI T EDP+E +
Sbjct  237  LGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYD  296

Query  372  LEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTL  431
            LEGV Q  VN KV +TFA  LR+ LRQDPD++MVGEIRDLETA+IA++A+ TGHLVMSTL
Sbjct  297  LEGVGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL  356

Query  432  HTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLLEMGFTP  491
            HTN A   +TR+R+MG+  F +++S+  V+AQRL R LC  C+ P  + E+  L MG   
Sbjct  357  HTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPRPITEQERLAMGM--  414

Query  492  EDLAQPEFQIFEPVGCHDCRE-GYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETL  550
             +LA P+ Q++ PVGC  C   GY+GR GI+E++ I   + + I      L I       
Sbjct  415  -ELA-PDQQVWRPVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRD-  471

Query  551  GFNNLRRSGLKKVMQGVTSLQEINRVTSE  579
               ++RR G+ KV++G TSL+E+ RVT E
Sbjct  472  HTPSIRRDGIDKVLKGQTSLEEVLRVTRE  500


>P31703 Type II secretion system protein E [Pectobacterium carotovorum 
subsp. carotovorum]
Length=498

 Score = 362 bits (929),  Expect = 9e-123
 Identities = 200/447 (45%), Positives = 292/447 (65%), Gaps = 24/447 (5%)

Query  147  KLERLLSEHFVEETHFNF--DTEEL-----DLDVEVDPHTTDDD--DEDDKLK--DEAPI  195
            ++ER+  E F  +   ++  D+EE      D+  E+D +T  ++  D DD L   D+API
Sbjct  61   RIERVTDEEFERQLVISYQRDSEEARRMMEDIGNEMDFYTLVEELPDSDDLLDADDDAPI  120

Query  196  VKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLASRLKVMS  255
            ++ IN +L +AI+  ASD+H E YE+   +R+RVDGVLR I  P  +LA+ L SR+KVM+
Sbjct  121  IRLINAMLTEAIKNKASDIHIETYERYLLIRFRVDGVLREILRPQRKLASLLVSRIKVMA  180

Query  256  QMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYE  315
            ++DI+EKRVPQDGR+ L++   + ID RV++LP+ +GE++VLR+LD  S  L ++ LG  
Sbjct  181  KLDIAEKRVPQDGRMALRVG-GRAIDVRVSTLPSNYGERVVLRLLDKNSVKLDLELLGMS  239

Query  316  PEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVEINLEGV  375
               + L    +++P G++L+TGPTGSGK+ +LY  L+ LN    NI T EDP+E  LEG+
Sbjct  240  ERNRQLLDSLIHRPHGIILVTGPTGSGKSTTLYAALSRLNASERNIMTVEDPIEYELEGI  299

Query  376  NQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNN  435
             Q  VN KV +TFA  LR+ LRQDPD+++VGEIRD ETA+IA++A+ TGHLV+STLHTN+
Sbjct  300  GQTQVNTKVDMTFARGLRAILRQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNS  359

Query  436  AAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLLEMGFTPEDLA  495
            A   L+RL++MGV  F ++TS+  V+AQRL R LCS C +P  V      +MG  P  L 
Sbjct  360  ALGALSRLQDMGVEPFLLSTSLLGVLAQRLVRTLCSDCSQPQPVDPVQAEQMGIAPGTL-  418

Query  496  QPEFQIFEPVGCHDCR-EGYKGRVGIYEVMKITPEISKIIMEDGNALEIAATAETLGFN-  553
                 +  PVGC  C   GY+GR+GI+E++ I  ++   I      +   A A+ LG + 
Sbjct  419  -----LHNPVGCPQCSFTGYRGRIGIHELVLINDDVRAAIHRSDGEM---AIAQILGGSR  470

Query  554  -NLRRSGLKKVMQGVTSLQEINRVTSE  579
              +R+ GL KV+ G+T+ +E+ RVT E
Sbjct  471  TTIRQDGLNKVLAGLTTWEEVIRVTKE  497


>Q00512 Type II secretion system protein E [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=502

 Score = 355 bits (911),  Expect = 5e-120
 Identities = 193/414 (47%), Positives = 272/414 (66%), Gaps = 13/414 (3%)

Query  169  LDLDVEVD--PHTTDDDDEDDKLKDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVR  226
            LDL    D  P T D  +++D    +API++ IN +L +AIR +ASD+H E +EK   VR
Sbjct  98   LDLAALADQVPETEDLMEQED----DAPIIRLINAILGEAIRENASDIHLETFEKRLVVR  153

Query  227  YRVDGVLRLIATPPLQLATRLASRLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNS  286
            +RVDGVLR +  P  +LA  L SR+KVM+++DI+EKR+PQDGRI L++   + +D RV++
Sbjct  154  FRVDGVLREVLEPKRELAALLVSRIKVMARLDIAEKRIPQDGRISLRVG-GREVDIRVST  212

Query  287  LPTLFGEKIVLRILDPASAMLGIDALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVS  346
            LP+  GE++VLR+LD  +  L +  LG     + L  E + KP G+LL+TGPTGSGKT +
Sbjct  213  LPSANGERVVLRLLDKQAGRLNLQHLGMSERDRKLMDETVRKPHGILLVTGPTGSGKTTT  272

Query  347  LYTGLNILNTEHANISTAEDPVEINLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVG  406
            LY  L  LN    NI T EDP+E +LEG+ Q  VN KV +TFA  LR+ LRQDPD++MVG
Sbjct  273  LYASLTTLNDRTRNILTVEDPIEYHLEGIGQTQVNAKVDMTFARGLRAILRQDPDVVMVG  332

Query  407  EIRDLETAEIAIKAAQTGHLVMSTLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLA  466
            EIRD ETAEIA++A+ TGHLV+STLHTN+A   +TRL +MG+  F +++S+  V+AQRL 
Sbjct  333  EIRDRETAEIAVQASLTGHLVLSTLHTNSAIGAITRLVDMGIEPFLLSSSMLGVLAQRLV  392

Query  467  RRLCSQCKRPIQVPERSLLEMGFTPEDLAQPEFQIFEPVGCHDCRE-GYKGRVGIYEVMK  525
            R LC  CK P +  E     +G  P   A P   +    GC +C + GY+GR GIYE++ 
Sbjct  393  RVLCPACKEPYRADEAECALLGVDP--AAPP--TLHRARGCGECHQHGYRGRTGIYELVV  448

Query  526  ITPEISKIIMEDGNALEIAATAETLGFNNLRRSGLKKVMQGVTSLQEINRVTSE  579
                +  +I  + +  E+   A T G  ++R  G +KV++GVT+++E+ RVT E
Sbjct  449  FDDHMRSLIHNESSEQEMTRHARTSG-PSIRDDGRRKVLEGVTTVEEVLRVTRE  501


>Q01566 Type II secretion system protein E [Dickeya dadantii (strain 
3937)]
Length=498

 Score = 351 bits (900),  Expect = 2e-118
 Identities = 187/417 (45%), Positives = 276/417 (66%), Gaps = 17/417 (4%)

Query  170  DLDVEVDPHTTDDD--DEDDKL--KDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRV  225
            D+  ++D +T  ++  D DD L  +D+API++ IN +L +AI+  ASD+H E +E+   +
Sbjct  91   DIGNDIDFYTLAEELPDSDDLLDGEDDAPIIRLINAMLTEAIKHKASDIHIETFERHLLI  150

Query  226  RYRVDGVLRLIATPPLQLATRLASRLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVN  285
            R+R+DGVLR I  P  QLA+ L SR+KVM+++DI+EKRVPQDGR+ L++   + ID RV+
Sbjct  151  RFRIDGVLREILRPQRQLASLLVSRIKVMAKLDIAEKRVPQDGRMALRIG-GRAIDVRVS  209

Query  286  SLPTLFGEKIVLRILDPASAMLGIDALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTV  345
            +LP+ +GE++VLR+LD  S  L ++ALG     +      +++P G++L+TGPTGSGK+ 
Sbjct  210  TLPSNYGERVVLRLLDKNSVRLDLEALGMAEHNRRQLDTLIHRPHGIILVTGPTGSGKST  269

Query  346  SLYTGLNILNTEHANISTAEDPVEINLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMV  405
            +LY  L+ LN+   NI T EDP+E  LEG+ Q  VNPKV +TFA  LR+ LRQDPD+++V
Sbjct  270  TLYAALSRLNSAERNIMTVEDPIEYELEGIGQTQVNPKVDMTFARGLRAILRQDPDVVLV  329

Query  406  GEIRDLETAEIAIKAAQTGHLVMSTLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRL  465
            GEIRD ETA+IA++A+ TGHLV+STLHTN+A   L+RL++MG+  F ++TS+  V+AQRL
Sbjct  330  GEIRDGETAQIAVQASLTGHLVLSTLHTNSALGALSRLQDMGIEPFLLSTSLLGVLAQRL  389

Query  466  ARRLCSQCKRPIQVPERSLLEMGFTPEDLAQPEFQIFEPVGCHDCR-EGYKGRVGIYEVM  524
             R LC  C++P  + +    + G            ++ P GC  C   GY+GR GI+E++
Sbjct  390  VRTLCPSCRQPYVINDEQAQQTGLAAGT------TLYHPGGCEKCNYSGYRGRTGIHELL  443

Query  525  KITPEISKIIMEDGNALEIAATAETLGFN--NLRRSGLKKVMQGVTSLQEINRVTSE  579
             I   +   I    + L I   A  LG     +R+ GL KV+ GVT+ +E+ RVT E
Sbjct  444  LIDDTVRTAIHHGESELGI---ARMLGDKRITIRQDGLDKVLAGVTTWEEVVRVTKE  497


>P37093 Type II secretion system ATPase E [Vibrio cholerae serotype 
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=503

 Score = 349 bits (895),  Expect = 1e-117
 Identities = 179/393 (46%), Positives = 265/393 (67%), Gaps = 11/393 (3%)

Query  190  KDEAPIVKYINKLLIDAIRMSASDLHFEPYEKSYRVRYRVDGVLRLIATPPLQLATRLAS  249
            +D+API+K IN +L +AI+  ASD+H E +EK+  +R+RVDGVLR +  P  +L++ L S
Sbjct  118  EDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVS  177

Query  250  RLKVMSQMDISEKRVPQDGRIKLKMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGI  309
            R+KVM+++DI+EKRVPQDGRI L++   + +D RV+++P+  GE++V+R+LD  +  L +
Sbjct  178  RVKVMAKLDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSHGERVVMRLLDKNATRLDL  236

Query  310  DALGYEPEQKALFMEALNKPQGMLLITGPTGSGKTVSLYTGLNILNTEHANISTAEDPVE  369
             +LG        F   + +P G++L+TGPTGSGK+ +LY GL  LN+   NI T EDP+E
Sbjct  237  HSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  296

Query  370  INLEGVNQVNVNPKVGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMS  429
             +++G+ Q  VNP+V +TFA  LR+ LRQDPD++MVGEIRDLETA+IA++A+ TGHLVMS
Sbjct  297  FDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS  356

Query  430  TLHTNNAAETLTRLRNMGVASFNIATSVNLVIAQRLARRLCSQCKRPIQVPERSLLEMGF  489
            TLHTN A   +TRLR+MG+  F I++S+  V+AQRL R LC  CK P +  +    E   
Sbjct  357  TLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADK----EQRK  412

Query  490  TPEDLAQPEFQIFEPVGCHDC-REGYKGRVGIYEVMKITPEISKIIMEDG--NALEIAAT  546
              +   +    ++   GC  C  +GY+GR GI+E++ +   + ++I  +    A+E    
Sbjct  413  LFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIR  472

Query  547  AETLGFNNLRRSGLKKVMQGVTSLQEINRVTSE  579
            A T    ++R  GL KV QG+TSL+E+ RVT E
Sbjct  473  ATT---PSIRDDGLDKVRQGITSLEEVMRVTKE  502



Lambda      K        H        a         alpha
   0.319    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2544432


  Database: 71266f5522f51644614846815edb3716.SwissProt.fasta
    Posted date:  Jun 1, 2024  12:07 PM
  Number of letters in database: 5,339
  Number of sequences in database:  10



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40