BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 58bf7e7de26005fcfc9ee09ae0f2e209.SwissProt.fasta
20 sequences; 2,632 total letters
Query= ACIAD0370
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
Q6FF39 Ribosome-binding factor A [Acinetobacter baylyi (strain AT... 259 9e-95
B2I2M8 Ribosome-binding factor A [Acinetobacter baumannii (strain... 232 6e-84
B0VE80 Ribosome-binding factor A [Acinetobacter baumannii (strain... 230 3e-83
A3M1K4 Ribosome-binding factor A [Acinetobacter baumannii (strain... 230 3e-83
B0VLU1 Ribosome-binding factor A [Acinetobacter baumannii (strain... 230 3e-83
B7I3S0 Ribosome-binding factor A [Acinetobacter baumannii (strain... 230 3e-83
B7H114 Ribosome-binding factor A [Acinetobacter baumannii (strain... 230 3e-83
A5WBS6 Ribosome-binding factor A [Psychrobacter sp. (strain PRwf-1)] 154 5e-53
Q4FVL4 Ribosome-binding factor A [Psychrobacter arcticus (strain ... 150 2e-51
Q1QEP4 Ribosome-binding factor A [Psychrobacter cryohalolentis (s... 149 3e-51
Q2SML2 Ribosome-binding factor A [Hahella chejuensis (strain KCTC... 112 1e-36
Q4ZNR3 Ribosome-binding factor A [Pseudomonas syringae pv. syring... 112 2e-36
Q4KIF5 Ribosome-binding factor A [Pseudomonas fluorescens (strain... 112 2e-36
Q48E78 Ribosome-binding factor A [Pseudomonas savastanoi pv. phas... 112 2e-36
P0A7G2 30S ribosome-binding factor [Escherichia coli (strain K12)] 87.4 9e-27
P32731 Ribosome-binding factor A [Bacillus subtilis (strain 168)] 85.9 2e-26
O34272 Ribosome-binding factor A [Yersinia enterocolitica] 74.7 8e-22
Q9WZV9 Ribosome-binding factor A [Thermotoga maritima (strain ATC... 64.7 6e-18
O05340 Ribosome-binding factor A [Stigmatella aurantiaca] 63.5 1e-17
Q9K333 Ribosome-binding factor A [Streptococcus agalactiae] 54.7 3e-14
>Q6FF39 Ribosome-binding factor A [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=133
Score = 259 bits (662), Expect = 9e-95
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL
Sbjct 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDKS 133
VQDLPEQSSEDKS
Sbjct 121 VQDLPEQSSEDKS 133
>B2I2M8 Ribosome-binding factor A [Acinetobacter baumannii (strain
ACICU)]
Length=133
Score = 232 bits (591), Expect = 6e-84
Identities = 115/132 (87%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+DK
Sbjct 121 VQDLPKRESDDK 132
>B0VE80 Ribosome-binding factor A [Acinetobacter baumannii (strain
AYE)]
Length=133
Score = 230 bits (587), Expect = 3e-83
Identities = 114/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+D+
Sbjct 121 VQDLPKRESDDE 132
>A3M1K4 Ribosome-binding factor A [Acinetobacter baumannii (strain
ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)]
Length=133
Score = 230 bits (587), Expect = 3e-83
Identities = 114/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+D+
Sbjct 121 VQDLPKRESDDE 132
>B0VLU1 Ribosome-binding factor A [Acinetobacter baumannii (strain
SDF)]
Length=133
Score = 230 bits (587), Expect = 3e-83
Identities = 114/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+D+
Sbjct 121 VQDLPKRESDDE 132
>B7I3S0 Ribosome-binding factor A [Acinetobacter baumannii (strain
AB0057)]
Length=133
Score = 230 bits (587), Expect = 3e-83
Identities = 114/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+D+
Sbjct 121 VQDLPKRESDDE 132
>B7H114 Ribosome-binding factor A [Acinetobacter baumannii (strain
AB307-0294)]
Length=133
Score = 230 bits (587), Expect = 3e-83
Identities = 114/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL 60
MAG QRLKRMADSVQRELSELIRQELKDPRLGGLVTIS VKVS D+GYA+VYVTVMGREL
Sbjct 1 MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGREL 60
Query 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
D+Q+E A++ETLD+LNKASGFLR ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
Sbjct 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA 120
Query 121 VQDLPEQSSEDK 132
VQDLP++ S+D+
Sbjct 121 VQDLPKRESDDE 132
>A5WBS6 Ribosome-binding factor A [Psychrobacter sp. (strain PRwf-1)]
Length=140
Score = 154 bits (389), Expect = 5e-53
Identities = 76/128 (59%), Positives = 99/128 (77%), Gaps = 0/128 (0%)
Query 4 SQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDE 63
+QRL+R+ D +QREL+ LIR ++ DPRL G VTIS+VKVS+D+GYA+VYVT+M EL D
Sbjct 2 NQRLQRLGDQIQRELAVLIRDDVNDPRLTGFVTISSVKVSSDLGYADVYVTIMEPELNDA 61
Query 64 QSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
S+ +++E+L VLNKA+GFLR ELS +KTR TPRLRFHYD+ A GNYM LI KAV
Sbjct 62 MSKHSHEESLKVLNKAAGFLRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLINKAVTK 121
Query 124 LPEQSSED 131
+ S++D
Sbjct 122 TEQTSADD 129
>Q4FVL4 Ribosome-binding factor A [Psychrobacter arcticus (strain
DSM 17307 / VKM B-2377 / 273-4)]
Length=134
Score = 150 bits (378), Expect = 2e-51
Identities = 75/129 (58%), Positives = 97/129 (75%), Gaps = 0/129 (0%)
Query 4 SQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDE 63
+QRL+R+AD +QREL+ LIR + DPRL G VTIS+VKVS D+GYA+VYVT+M EL D
Sbjct 2 NQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSVKVSPDLGYADVYVTIMEPELNDA 61
Query 64 QSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
+ + ++E++ VLNKA+GFLR ELS +KTR TPRLRFHYD+ A GNYM LI KAV
Sbjct 62 MTMSNHEESIKVLNKAAGFLRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVIK 121
Query 124 LPEQSSEDK 132
E S+++
Sbjct 122 TEENESDEQ 130
>Q1QEP4 Ribosome-binding factor A [Psychrobacter cryohalolentis
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)]
Length=134
Score = 149 bits (377), Expect = 3e-51
Identities = 74/129 (57%), Positives = 97/129 (75%), Gaps = 0/129 (0%)
Query 4 SQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDE 63
+QRL+R+AD +QREL+ LIR + DPRL G VTIS++KVS D+GYA+VYVT+M EL D
Sbjct 2 NQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELNDA 61
Query 64 QSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
+ + ++E++ VLNKA+GFLR ELS +KTR TPRLRFHYD+ A GNYM LI KAV
Sbjct 62 MTMSNHEESIKVLNKAAGFLRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVIK 121
Query 124 LPEQSSEDK 132
E S+++
Sbjct 122 TEENESDEQ 130
>Q2SML2 Ribosome-binding factor A [Hahella chejuensis (strain
KCTC 2396)]
Length=135
Score = 112 bits (281), Expect = 1e-36
Identities = 62/129 (48%), Positives = 91/129 (71%), Gaps = 3/129 (2%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
RL R+A+ +Q+EL++LI++ELKDPRLG +VT+++VKVS D+ YA+VYVTV+ + ++
Sbjct 7 RLDRVAEQIQKELAQLIQRELKDPRLG-MVTVNSVKVSKDLSYADVYVTVLNLKDVEDDG 65
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA-VQDL 124
+A+ K +L VL A+GFLR EL R IK R+ P+LRFHYD + + + LI+KA +D
Sbjct 66 DAS-KASLKVLESAAGFLRSELGRAIKLRVMPQLRFHYDASVSNAQRLGALIQKARAKDS 124
Query 125 PEQSSEDKS 133
S D S
Sbjct 125 SASDSSDDS 133
>Q4ZNR3 Ribosome-binding factor A [Pseudomonas syringae pv. syringae
(strain B728a)]
Length=138
Score = 112 bits (280), Expect = 2e-36
Identities = 57/118 (48%), Positives = 89/118 (75%), Gaps = 6/118 (5%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
R +R+ D +QREL++LIR+E+KDPR+G LVTI+AV VS D+G+A++++TVMG++ +E +
Sbjct 7 RTQRIGDQMQRELAQLIRREIKDPRVG-LVTITAVDVSRDVGHAKIFMTVMGQDSAEEIA 65
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
+ T+ VLN A+GFLR +L+R +K R P+L FHYD++ G ++ LIE+AV +
Sbjct 66 Q-----TIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAE 118
>Q4KIF5 Ribosome-binding factor A [Pseudomonas fluorescens (strain
ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=133
Score = 112 bits (279), Expect = 2e-36
Identities = 56/118 (47%), Positives = 91/118 (77%), Gaps = 6/118 (5%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
R +R+ D +QREL++LIR+E+KDPR+G LVTI+AV+VS D+G+A++++TVMG+E ++ +
Sbjct 7 RTQRIGDQMQRELAQLIRREVKDPRVG-LVTITAVEVSRDVGHAKIFITVMGQENAEQIA 65
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
++ + VLN A+GFLR +L++ +K R P+L FHYD++ A G ++ LIE+AV +
Sbjct 66 QS-----IKVLNSAAGFLRMQLAKEMKLRSVPQLHFHYDESVARGAHLSALIERAVAE 118
>Q48E78 Ribosome-binding factor A [Pseudomonas savastanoi pv.
phaseolicola (strain 1448A / Race 6)]
Length=138
Score = 112 bits (279), Expect = 2e-36
Identities = 57/116 (49%), Positives = 88/116 (76%), Gaps = 6/116 (5%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
R +R+ D +QREL++LIR+E+KDPR+G LVTI+AV VS D+G+A++++TVMG++ +E +
Sbjct 7 RTQRIGDQMQRELAQLIRREIKDPRVG-LVTITAVDVSRDVGHAKIFMTVMGQDSAEEIA 65
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAV 121
+ T+ VLN A+GFLR +L+R +K R P+L FHYD++ G ++ LIE+AV
Sbjct 66 Q-----TIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAV 116
>P0A7G2 30S ribosome-binding factor [Escherichia coli (strain
K12)]
Length=133
Score = 87.4 bits (215), Expect = 9e-27
Identities = 48/132 (36%), Positives = 79/132 (60%), Gaps = 11/132 (8%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
R +R+A +Q+E++ ++++E+KDPRLG + T+S V++S D+ YA+VYVT + +++
Sbjct 7 RPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFL-----NDKD 61
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD-- 123
E A K + L +ASGF+R L + ++ RI P L F YD + G M L+ V+
Sbjct 62 EDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDE 121
Query 124 ----LPEQSSED 131
P+ S ED
Sbjct 122 ERRVNPDDSKED 133
>P32731 Ribosome-binding factor A [Bacillus subtilis (strain 168)]
Length=117
Score = 85.9 bits (211), Expect = 2e-26
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query 4 SQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDE 63
S R R+ + +++EL ++I ++LKDPR+G L T++ V+VS D+ A+VY++V+G
Sbjct 2 SMRANRVGEQMKKELGDIISRKLKDPRIGFL-TVTDVRVSGDLQIAKVYISVLG------ 54
Query 64 QSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
E +E L L KA GF+R E+ RI+ R TP + F +D++ YGN + LI + +
Sbjct 55 -DEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETLIHELHSE 113
Query 124 LPEQ 127
P +
Sbjct 114 KPSE 117
>O34272 Ribosome-binding factor A [Yersinia enterocolitica]
Length=133
Score = 74.7 bits (182), Expect = 8e-22
Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 2/118 (2%)
Query 6 RLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQS 65
R +R++ +Q+E++ ++++E+KDPR+G + T+S +++S D+ YA+V+VT + L D
Sbjct 4 RSQRVSQEMQKEIALILQREIKDPRVG-MATVSGIELSRDLAYAKVFVTFLN-VLTDNAD 61
Query 66 EAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQD 123
K + L ASG++R L + ++ RI P L F YD + G M L+ +++
Sbjct 62 PDTAKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVTNVIKN 119
>Q9WZV9 Ribosome-binding factor A [Thermotoga maritima (strain
ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=131
Score = 64.7 bits (156), Expect = 6e-18
Identities = 37/106 (35%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query 1 MAGSQRLKRMADSVQRELSELIRQELKDPRLG-GLVTISAVKVSADMGYAEVYVTVMGRE 59
M + R + +Q+ L E + Q+L+DPRL VT S V++S D YA+VYV+ +G
Sbjct 1 MNPAYRKAMLESEIQKLLMEAL-QQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLG-- 57
Query 60 LGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDK 105
+ KET+++LN+A GF R +++ ++ + P +RF+ DK
Sbjct 58 -----TPEERKETVEILNRAKGFFRTFIAKNLRLYVAPEIRFYEDK 98
>O05340 Ribosome-binding factor A [Stigmatella aurantiaca]
Length=119
Score = 63.5 bits (153), Expect = 1e-17
Identities = 39/123 (32%), Positives = 70/123 (57%), Gaps = 9/123 (7%)
Query 1 MAGSQRLKRMADSVQRELSELI-RQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRE 59
M R +R+ +Q + +L+ R EL+DPR+G +TI+ VKVS D+ A+V+ ++MG
Sbjct 1 MTTHSRPERVGQEIQAAIGQLLTRGELRDPRIG-FITITGVKVSPDLRVAQVFYSMMGTA 59
Query 60 LGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEK 119
Q A ++ LD A GF+R E++ + R++P + F +D++ G+ + L+ +
Sbjct 60 ----QERAETQKGLDA---AKGFVRREVTAAVNLRVSPEVFFTFDESVGEGDKIDRLLRE 112
Query 120 AVQ 122
Q
Sbjct 113 VKQ 115
>Q9K333 Ribosome-binding factor A [Streptococcus agalactiae]
Length=116
Score = 54.7 bits (130), Expect = 3e-14
Identities = 32/108 (30%), Positives = 58/108 (54%), Gaps = 7/108 (6%)
Query 4 SQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDE 63
+ R+ R+ ++RE++E++R + DPR+ VTI+ V++ D+ A+V+ T+ D
Sbjct 3 NHRIDRVGMEIKREVNEILRLRVNDPRVQD-VTITDVQMLGDLSMAKVFYTIHSTLASDN 61
Query 64 QSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGN 111
Q L KA+G ++ EL + + P L+F D++ YGN
Sbjct 62 QKAQIG------LEKATGTIKRELGKNLTMYKIPDLQFVKDESIEYGN 103
Lambda K H a alpha
0.319 0.134 0.365 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 199172
Database: 58bf7e7de26005fcfc9ee09ae0f2e209.SwissProt.fasta
Posted date: Jun 1, 2024 2:27 PM
Number of letters in database: 2,632
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
