BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eebdf67c89d1528edbeb0bda04ea1538.SwissProt.fasta
6 sequences; 6,633 total letters
Query= ACIAD0397
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
P07648 RecBCD enzyme subunit RecC [Escherichia coli (strain K12)] 270 6e-78
P44945 RecBCD enzyme subunit RecC [Haemophilus influenzae (strain... 207 1e-57
A0QS30 RecBCD enzyme subunit RecC [Mycolicibacterium smegmatis (s... 136 2e-35
P9WIQ5 RecBCD enzyme subunit RecC [Mycobacterium tuberculosis (st... 119 2e-30
P9WIQ4 RecBCD enzyme subunit RecC [Mycobacterium tuberculosis (st... 117 1e-29
Q89AB4 RecBCD enzyme subunit RecC [Buchnera aphidicola subsp. Bai... 82.4 6e-19
>P07648 RecBCD enzyme subunit RecC [Escherichia coli (strain K12)]
Length=1122
Score = 270 bits (690), Expect = 6e-78
Identities = 275/1157 (24%), Positives = 507/1157 (44%), Gaps = 152/1157 (13%)
Query 3 IHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQGITAN 62
+ V S R+DVL + + + + + R D + +V S + QWL LS+ GI AN
Sbjct 2 LRVYHSNRLDVL-EALMEFIVERERLD-DPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59
Query 63 YLFHQRIRGFQWYAYQQVLSEHKDDVRKANIPRLILKWRVYQALYDFIQPDQILITQDHP 122
F F W + +VL E +++ + + W++ L ++ + + + +
Sbjct 60 IDFPLPA-SFIWDMFVRVLPEIP---KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY- 114
Query 123 AYSIIARIYDSADRLENGFEKQLKKQKMLYWVAEQVSQLFSNYMIYRGHCQKNCAGNCGC 182
+ D +D+ + L+ ++ + + LF Y++YR
Sbjct 115 -------LTDDSDK------------RKLFQLSSKAADLFDQYLVYR------------- 142
Query 183 ASNWLSAWGENRELDIEQLIVQGNKEISAFQLQQAQELEAWQRWLWH---RYFHQDFLDI 239
+WL+ W +V+G E +AWQ LW Y HQ
Sbjct 143 -PDWLAQWETGH-------LVEG-----------LGEAQAWQAPLWKALVEYTHQLGQPR 183
Query 240 QNIDDLFWQVLEQPQTRDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYNP 299
+ +L+ + +E ++ LP ++ + + LPP LQ L+ LG+++++ +L NP
Sbjct 184 WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNP 243
Query 300 SQEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARES-RHPL 358
+ YW D DP + + R ++ E ++ + + E FN++ + +PL
Sbjct 244 CRYYWGDIKDPAYLAKLLTRQRRHSFEDR----ELPLFRDSENAGQLFNSDGEQDVGNPL 299
Query 359 LTRLGKQARDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLAEPQAG----- 413
L GK RD+ LL++L + +E +DAFVD PD LL +QSDIL L
Sbjct 300 LASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356
Query 414 -------RYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPNDILVVVP 466
+ L+P D SI FHVCHS R++EVL D+L+ L ++ + P DI+V+V
Sbjct 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT---PRDIIVMVA 413
Query 467 NIKEIEPLIRSVFPATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFA 526
+I P I++VF + P+D +LP IS A + ++L R +D
Sbjct 414 DIDSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471
Query 527 DWLSLPATQVCYDLEDSQIKRMLALLAGAGFKRGFDIHHLQQ-SLSAEDHDDRYSFKFAL 585
L +P +D+ + ++ + + +G + G D ++++ L A +++++F L
Sbjct 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG---QHTWRFGL 528
Query 586 DRLALGIAIPE-HTLFQGVLSYSGVTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHS 644
R+ LG A+ +Q VL Y + EL+G L + ++ R LA E+
Sbjct 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG-LAQER----P 583
Query 645 VEDWLKILMQDVIEFEQAGVVALKTAREIIKKQERMVT---LASFYADKDAHTLRQIALP 701
+E+WL + +D++ + A +I++Q + + L + Y D A+P
Sbjct 584 LEEWLPVC-RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD---------AVP 633
Query 702 LPYILDEIQRTLEHQS-AQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIP 760
L + DE+ + L+ + +Q G + + +R +P+++V +L ++ G +P + + +
Sbjct 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693
Query 761 FDLMDALRQQLGDRSRLEDDQGAFLDAVLLAQQALWLFYNGFDLNDGEVREPSSILQEFR 820
FDLM + + GDRSR +DD+ FL+A++ AQQ L++ Y G + D R PS ++QE
Sbjct 694 FDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752
Query 821 DHLALI-VAPAEQIAKHEDSNLTIQMQQQQFKLLDIPNQLWPLYCVHPLQPFDPLGFGNL 879
D++ P ++ ++S ++ L C+H PFDP +
Sbjct 753 DYIGQSHYLPGDEALNCDESEARVKAH---------------LTCLHTRMPFDPQNY-QP 796
Query 880 PVAKRYQDQWYQVAQSIQEA-SAILQPWVNMVYTQPQQELRVLDSQQWMADVTFPARLYL 938
+ Y +W A +A S +QP + +T P+ + W P R +
Sbjct 797 GERQSYAREWLPAASQAGKAHSEFVQP---LPFTLPETVPLETLQRFW----AHPVRAFF 849
Query 939 K-NLGVENLAMTTLLDQNEPLFLDGLGRYAIR----NFLQKQ---EQTTTPDTLLDQLPV 990
+ L V + + EP L+GL RY I N L +Q E+ LP
Sbjct 850 QMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPY 909
Query 991 GKIKHSAWQQSLAEQERLLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQDWVSL 1050
G W+ E ++L +R+ + + + + + +P+ +
Sbjct 910 GAFGEIFWETQCQEMQQLADRV--IACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRW 967
Query 1051 EASSARAKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQARDYLTQ 1110
S + ++WLE+L++ + G R+ + D +++ QA YL+Q
Sbjct 968 RPSLLSVAQGMQLWLEHLVYCA-----SGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022
Query 1111 WLKMWQVASTQP-VVLP 1126
++ ++ + P +VLP
Sbjct 1023 LIEGYREGMSAPLLVLP 1039
>P44945 RecBCD enzyme subunit RecC [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=1121
Score = 207 bits (526), Expect = 1e-57
Identities = 231/964 (24%), Positives = 416/964 (43%), Gaps = 127/964 (13%)
Query 29 PFDVLATQHFIVPSPAVEQWLTEKLSELQGITANYLFHQRIRGFQWYAYQQVLSEHKDDV 88
P D +V SP + QWL +L++ GI+AN F F W Y Q L
Sbjct 26 PEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMPA-SFIWQLYAQNLPA---TA 81
Query 89 RKANIPRLILKWRVYQALYDFIQPDQILITQDHPAYSIIARIYDSADRLENGFEKQLKKQ 148
+ + + WR+ + + F++ + +S + S+ E Q
Sbjct 82 LENPFDKDSMMWRLMRLIPIFLEKEN---------FSPLRNYLSSSPHSE---------Q 123
Query 149 KMLYWVAEQVSQLFSNYMIYRGHCQKNCAGNCGCASNWLSAWGENRELDIEQLIVQGNKE 208
LY ++ +++ LF Y++YR W+ AW + + I I +
Sbjct 124 YKLYQLSSKIADLFDQYLVYR--------------PEWIFAWEKGEDEQITDQIQKQQPN 169
Query 209 ISAFQLQQAQELEAWQRWLWHRYFHQDFLDIQN------IDDLFWQVLEQPQTRDIALKR 262
++A Q Q WQ LW D+ + + F +L + A K+
Sbjct 170 LNATLFAQIQGNTKWQGELWRALVVDVKSDVNEATHRAALHNQFLALLADKK----APKK 225
Query 263 LPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYNPSQEYWADSVDPLWKQRYD-VRVK 321
LP +I +F + LP + L L+ + +D+ + NP QEYW D D R D +R +
Sbjct 226 LPSRIFIFGIPALPTAYLNILQAISSEVDIHLFFNNPCQEYWGDISD----LRLDYLRSR 281
Query 322 QRFI-----EKNPAATDVDIAQFFE-QFTLHFNAEARESRHPLLTRLGKQARDHFSLLAN 375
QR+ E P ++ ++Q QF + + E + +PLL GK RD +L
Sbjct 282 QRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQKENLQLGNPLLAAWGKMGRDFLYILVR 341
Query 376 LSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLAEPQAGRYTLEPSDESIRFHVCHSSLRQ 435
V+A+ + ++LLGQ+QS IL+L + +D ++ H CHS++R+
Sbjct 342 DEEHIPTYPVNAYQEIESNSLLGQLQSQILHLENKPLN---IAKNDRTLTLHSCHSAMRE 398
Query 436 LEVLRDQLIHWLSQNDDASVRRPNDILVVVPNIKEIEPLIRSVFPATPSDDGVFLPIKIS 495
+EVL D L+ +Q+ + P D++V+V +I + P I++VF + D +P +S
Sbjct 399 VEVLHDYLLDLFNQDPSLT---PKDVVVMVADINQYTPYIQAVF-GQKNGDVPQIPFSLS 454
Query 496 G--VVQLDVMNAWRAVLGRMTLLQGRLSYDDFADWLSLPATQVCYDLEDSQIKRMLALLA 553
+ + DV+ + + L + L + S +D L +PA + +++ + + + +
Sbjct 455 DNKLSESDVLVS--SYLTLLRLKESNFSAEDVLVLLDIPAMRERFNISLADLPLVREWVT 512
Query 554 GAGFKRGFDIHHLQQSLSAEDHDDRYSFKFALDRLALGIAIPEHT-LFQGVLSYSGVTPD 612
+G + G LQ++ +D + S++ L+R+ LG A+ E ++Q L +
Sbjct 513 DSGIRFG-----LQKN---QDGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGL 564
Query 613 DFELIGKLIQIYQDIDARRNWVLAHEQGTQ-HSVEDWLKILMQDVIEFEQAGVVALKTAR 671
EL G L + + A HE Q HS+E W +IL + +F V T+
Sbjct 565 KGELAGNLSHFFTALSA------LHETLQQAHSIEKWQEILTALLSDFF---VRNEDTSD 615
Query 672 EIIKKQERMVTLASFYADKDAHTLRQIALPLPYILDEIQRTLEHQSAQAE-PTGQITFSQ 730
I QE++ LA K H ++ + I D I LE + G++ F
Sbjct 616 MIFYIQEKINELAEHL--KTLHFNEELQAEV--IADVITMQLEDAPNSLKFLAGKVNFCT 671
Query 731 IGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLMDALRQQLGDRSRLEDDQGAFLDAVLL 790
+ +R +P+++V +L ++ +P + FDLM Q GDR R +DD+ FL+A+L
Sbjct 672 LLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQ-YHYQKGDRVRRDDDRYLFLEALLA 730
Query 791 AQQALWLFYNGFDLNDGEVREPSSILQEFRDHLALIVAPAEQIAKHEDSNLTIQMQQQQF 850
A+ ++ Y G + D + +EPS ++ + D++ Q Q+
Sbjct 731 ARDYCYISYVGRSITDNQPKEPSVLVSQLLDYI---------------------NQGQKE 769
Query 851 KLLDIPNQLWPLYCVHPLQPFDPLGF-GNLPVAKRYQDQWYQVAQSIQEASAILQPWVNM 909
+L + HP+ F P F N + + +W +AQ +AS+ + +
Sbjct 770 NVLTV--------IEHPMTAFSPDNFKNNEKFTRSFATKWLPIAQF--DASSNNSEFA-V 818
Query 910 VYTQPQQELRVLDSQQWMADVTFPARLYL-KNLGVENLAMTTLLDQNEPLFLDGLGRYAI 968
T+ +++ ++ ++ V P + + K LGV + +E L GL Y++
Sbjct 819 TMTENLEKIEEVELDALVSFVENPVKFFFEKQLGVYFRDKDERIADSENFTLSGLDNYSL 878
Query 969 RNFL 972
N L
Sbjct 879 NNDL 882
>A0QS30 RecBCD enzyme subunit RecC [Mycolicibacterium smegmatis
(strain ATCC 700084 / mc(2)155)]
Length=1085
Score = 136 bits (342), Expect = 2e-35
Identities = 175/672 (26%), Positives = 272/672 (40%), Gaps = 117/672 (17%)
Query 222 AWQRWLWHRYFHQDFLDIQNIDDLFWQVLEQPQTRDIALKRLPKQIVMFTLLDLPPSQLQ 281
AWQ+ LW + D +I V D LP+++ +F LP ++++
Sbjct 159 AWQKALWQALCERIDADPPHIRHAKTLVQLHESPTD-----LPQRLSLFGHTRLPATEVE 213
Query 282 FLRRLGQYLDVLILHYNPSQEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFE 341
L L + D+ + +PS W Q R K P D +
Sbjct 214 LLTALATHHDLHLWLPHPSDTLW---------QALSTR-------KGPLPRREDTSH--- 254
Query 342 QFTLHFNAEARESRHPLLTRLGKQARDHFSLLANLSTGE-EGRWVDAFVDDFPDTLLGQV 400
R+ HPLL LG+ R+ LL T E GR ++PDTLLG +
Sbjct 255 ----------RDVGHPLLATLGRDLREMQRLLPEPDTDEFRGR------SEYPDTLLGWL 298
Query 401 QSDILNLAEPQAGRYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPND 460
QSDI A GR+ D SI+ H CH RQ++VLR+ L+ L+ DD ++ P D
Sbjct 299 QSDIAADAVRPQGRHHRR-EDRSIQVHSCHGPSRQIDVLREVLLGLLA--DDPTLE-PRD 354
Query 461 ILVVVPNIKEIEPLIRSVF---PATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQ 517
ILV+ P+I+ PLI + F P G + + +L V A RA++ LL
Sbjct 355 ILVMCPDIETYAPLITAGFGLGDVVPRTRGAHINLSAHPAHKLRVRLADRALVQTNPLLA 414
Query 518 ----------GRLSYDDFADWLSLPATQVCYDLEDSQIKRMLALLAGAGFKRGFDIHHLQ 567
GR + + + + + D + + A A + GFD H +
Sbjct 415 VAAQLLALAGGRATASEVLNLAESAPVRARFGFTDDDLDAITAWTREANIRWGFDQEHRR 474
Query 568 QSLSAEDHDDRYSFKFALDRLALGIAIPE--HTLFQGVLSYSGVTPDDFELIGKLIQIYQ 625
H+ +++F +DR+ G+A+ + H L V+ + EL G+ +
Sbjct 475 PYGVEFLHN---TWRFGIDRVLAGVAMSDDSHAWLGTTLPLDDVSSNRVELAGR----FA 527
Query 626 DIDARRNWVLAHEQGTQHSVEDWLKILMQDVIEFEQAGVVALKTAREI--IKKQERMVTL 683
D + + GT+ + +WL L AG+ AL A E + +R
Sbjct 528 DFVEKLRRTVDQLSGTR-PLHEWLDALT--------AGIDALALADEDWPAAQMQREFAE 578
Query 684 ASFYADKDAHTLRQIALPLPYILDEIQRTLEHQSAQAE-PTGQITFSQIGQIRPLPYRLV 742
+ A A +LR L + + R L + +A TG +T + +R +P+R+V
Sbjct 579 ITARAGDTATSLR-----LADVRALLDRHLAGRPTRANFRTGTLTVCTMVPMRSVPHRVV 633
Query 743 VMLNLDTGRFPNRDSHIPFDLMDALRQQ--LGDRSRLEDDQGAFLDAVLLAQQALWLFYN 800
++ LD G FP + D DAL + G+R +D+ LDA+L A Q L + Y
Sbjct 634 CLVGLDDGVFPRLGA---VDGDDALARDPMTGERDIRSEDRQLLLDAILAATQTLVITYT 690
Query 801 GFDLNDGEVREPSSILQEFRDHLALIVAPAEQIAKHEDSNLTIQMQQQQFKLLDIPNQLW 860
G + G+ R P+ L E D L + EDS L + +
Sbjct 691 GANEYSGQARPPAVPLAELIDTLKITT---------EDSALDVLTR-------------- 727
Query 861 PLYCVHPLQPFD 872
HPLQPFD
Sbjct 728 -----HPLQPFD 734
Score = 45.1 bits (105), Expect = 2e-07
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 3/61 (5%)
Query 1 MAIHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQGIT 60
MA+H+ +++R D+L G+ + P PF AT+ +VP+ VE+WL+++LS G+
Sbjct 1 MALHLHRAERTDLLADGLAALLSDPLPDPF---ATELVLVPAKGVERWLSQRLSNRLGVC 57
Query 61 A 61
A
Sbjct 58 A 58
>P9WIQ5 RecBCD enzyme subunit RecC [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=1097
Score = 119 bits (299), Expect = 2e-30
Identities = 149/624 (24%), Positives = 242/624 (39%), Gaps = 100/624 (16%)
Query 263 LPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYNPSQEYWA-----DSVDPLWKQRYD 317
LP ++ +F L + +Q L L + D+ + +PS E W D L +R D
Sbjct 209 LPARLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHPSDELWRALAGFQGADGLLPRRQD 268
Query 318 VRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARESRHPLLTRLGKQARDHFSLLANLS 377
R ++HPLL LG+ R+ L
Sbjct 269 T-------------------------------SRRAAQHPLLETLGRDVRELQRALP--- 294
Query 378 TGEEGRWVDAFVDDF--PDTLLGQVQSDILNLAEPQAGRYTLEPSDESIRFHVCHSSLRQ 435
R D F+ PDTLLG +Q+DI A AGR +L +D S++ H CH RQ
Sbjct 295 ---AARATDEFLGATTKPDTLLGWLQADIAGNAPRPAGR-SLSDADRSVQVHACHGPARQ 350
Query 436 LEVLRDQLIHWLSQNDDASVRRPNDILVVVPNIKEIEPLIRSVFP----ATPSDDGVFLP 491
++VLR+ L+ L +D +P DI+V+ P+I PLI + F A L
Sbjct 351 IDVLREVLLGLL---EDDPTLQPRDIVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLR 407
Query 492 IKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFADWLSLPATQVCYDLEDSQIKRMLAL 551
++++ +T+ + R + + + + D + +
Sbjct 408 VRLADRALTQTNPLLSVAAELLTIAETRATASQLLNLAQAAPVRAKFGFADDDLDTITTW 467
Query 552 LAGAGFKRGFD-IHHLQQSLSAEDHDDRYSFKFALDRLALGIAIPEHTL--FQGVLSYSG 608
+ + + GFD H + L H+ +++F LDR+ G+A+ E + L
Sbjct 468 VRESNIRWGFDPTHRRRYGLDTVVHN---TWRFGLDRILTGVAMSEDSQAWLDTALPLDD 524
Query 609 VTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHSVEDWLKILMQDVIEFEQAGVVALK 668
V + EL G+L + + R + V+ G + V WL L G+ L
Sbjct 525 VGSNRVELAGRLAEFVE----RLHHVVGGLSGARPLVA-WLDALA--------TGIDLLT 571
Query 669 TAREIIKKQERMVTLASFYADKDAHTLRQIALPLPYILDEIQRTLEHQSAQAEPTGQITF 728
+ ++ + A A + + LP L + Q A TG +T
Sbjct 572 ACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDAQLAGRPTRANFR-TGTLTV 630
Query 729 SQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLMDALRQQLGDRSRLEDDQGAFLDAV 788
+ +R +P+R+V ++ LD G FP R SH D + A G+R +D+ LDA+
Sbjct 631 CTMVPMRSVPHRVVCLVGLDDGVFP-RLSHPDGDDVLAREPMTGERDIRSEDRQLLLDAI 689
Query 789 LLAQQALWLFYNGFDLNDGEVREPSSILQEFRDHLALIVAPAEQIAKHEDSNLTIQMQQQ 848
A Q L + Y G D G+ R P+ L E D L D + ++++
Sbjct 690 GAATQTLVITYTGADERTGQPRPPAVPLAELLDAL--------------DQTTSAPVRER 735
Query 849 QFKLLDIPNQLWPLYCVHPLQPFD 872
+ HPLQPFD
Sbjct 736 -------------ILVTHPLQPFD 746
Score = 37.0 bits (84), Expect = 5e-05
Identities = 19/58 (33%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query 1 MAIHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQG 58
MA+H+ +++R D+L G+ + P PF A + +V + VE+WL+++LS + G
Sbjct 1 MALHLHRAERTDLLADGLGALLADPQPDPF---AQELVLVAARGVERWLSQRLSLVLG 55
>P9WIQ4 RecBCD enzyme subunit RecC [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=1097
Score = 117 bits (293), Expect = 1e-29
Identities = 148/624 (24%), Positives = 241/624 (39%), Gaps = 100/624 (16%)
Query 263 LPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYNPSQEYWA-----DSVDPLWKQRYD 317
LP ++ +F L + +Q L L + D+ + +PS E W D L +R D
Sbjct 209 LPARLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHPSDELWRALAGFQGADGLLPRRQD 268
Query 318 VRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARESRHPLLTRLGKQARDHFSLLANLS 377
R ++HPLL LG+ R+ L
Sbjct 269 T-------------------------------SRRAAQHPLLETLGRDVRELQRALP--- 294
Query 378 TGEEGRWVDAFVDDF--PDTLLGQVQSDILNLAEPQAGRYTLEPSDESIRFHVCHSSLRQ 435
R D F+ PDTLLG +Q+DI A AGR +L +D S++ H CH RQ
Sbjct 295 ---AARATDEFLGATTKPDTLLGWLQADIAGNAPRPAGR-SLSDADRSVQVHACHGPARQ 350
Query 436 LEVLRDQLIHWLSQNDDASVRRPNDILVVVPNIKEIEPLIRSVFP----ATPSDDGVFLP 491
++VLR+ L+ L +D +P DI+V+ P+I PLI + F A L
Sbjct 351 IDVLREVLLGLL---EDDPTLQPRDIVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLR 407
Query 492 IKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFADWLSLPATQVCYDLEDSQIKRMLAL 551
++++ +T+ + R + + + + D + +
Sbjct 408 VRLADRALTQTNPLLSVAAELLTIAETRATASQLLNLAQAAPVRAKFGFADDDLDTITTW 467
Query 552 LAGAGFKRGFD-IHHLQQSLSAEDHDDRYSFKFALDRLALGIAIPEHTL--FQGVLSYSG 608
+ + + GFD H + L H+ +++ LDR+ G+A+ E + L
Sbjct 468 VRESNIRWGFDPTHRRRYGLDTVVHN---TWRLGLDRILTGVAMSEDSQAWLDTALPLDD 524
Query 609 VTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHSVEDWLKILMQDVIEFEQAGVVALK 668
V + EL G+L + + R + V+ G + V WL L G+ L
Sbjct 525 VGSNRVELAGRLAEFVE----RLHHVVGGLSGARPLVA-WLDALA--------TGIDLLT 571
Query 669 TAREIIKKQERMVTLASFYADKDAHTLRQIALPLPYILDEIQRTLEHQSAQAEPTGQITF 728
+ ++ + A A + + LP L + Q A TG +T
Sbjct 572 ACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDAQLAGRPTRANFR-TGTLTV 630
Query 729 SQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLMDALRQQLGDRSRLEDDQGAFLDAV 788
+ +R +P+R+V ++ LD G FP R SH D + A G+R +D+ LDA+
Sbjct 631 CTMVPMRSVPHRVVCLVGLDDGVFP-RLSHPDGDDVLAREPMTGERDIRSEDRQLLLDAI 689
Query 789 LLAQQALWLFYNGFDLNDGEVREPSSILQEFRDHLALIVAPAEQIAKHEDSNLTIQMQQQ 848
A Q L + Y G D G+ R P+ L E D L D + ++++
Sbjct 690 GAATQTLVITYTGADERTGQPRPPAVPLAELLDAL--------------DQTTSAPVRER 735
Query 849 QFKLLDIPNQLWPLYCVHPLQPFD 872
+ HPLQPFD
Sbjct 736 -------------ILVTHPLQPFD 746
Score = 37.0 bits (84), Expect = 5e-05
Identities = 19/58 (33%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query 1 MAIHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQG 58
MA+H+ +++R D+L G+ + P PF A + +V + VE+WL+++LS + G
Sbjct 1 MALHLHRAERTDLLADGLGALLADPQPDPF---AQELVLVAARGVERWLSQRLSLVLG 55
Score = 19.6 bits (39), Expect = 9.2
Identities = 24/102 (24%), Positives = 40/102 (39%), Gaps = 14/102 (14%)
Query 1024 HHVWRVSKTLHLNIIMPEHDVQDWVS----LEASSARAKRIAKVWLEYLLWLSYLNEGDA 1079
H+ WR+ L + D Q W+ L+ + +A E++ L ++ G +
Sbjct 492 HNTWRLGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLS 551
Query 1080 GQRRRRIVVFSDQTVICEGVSSIQARDYLTQWLKMWQVASTQ 1121
G R +V + D + G+ D LT WQ A Q
Sbjct 552 G--ARPLVAWLD--ALATGI------DLLTACNDGWQRAQVQ 583
>Q89AB4 RecBCD enzyme subunit RecC [Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp)]
Length=1111
Score = 82.4 bits (202), Expect = 6e-19
Identities = 145/777 (19%), Positives = 309/777 (40%), Gaps = 147/777 (19%)
Query 22 VHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQGITANYLFHQRIRGFQWYAYQQVL 81
+++P P L + FIV + EQW+ +++ + N F + L
Sbjct 22 LNEPLLNP---LTKEIFIVNNKETEQWIKIFIAKKYKVCTNIKFFK-------------L 65
Query 82 SEHKDDVRKANIPRLILKWRVYQALYDFIQPDQILITQDHPAYSIIARIYDSADRLENGF 141
++ K N P+L K + YSI+ +I + D +++
Sbjct 66 KHFILNILKQNTPKLYSK-------------------SEFSKYSIMWKIINIPD-IQHLL 105
Query 142 EKQLKKQKM---LYWVAEQVSQLFSNYMIYRGHCQKNCAGNCGCASNWLSAWGENRELDI 198
K + K L+ +A +S LF Y+ YR +++ W + +
Sbjct 106 TKIVSKNNTYSTLFKIASSISNLFQLYLKYR--------------PDYIKKWEQKSNIPK 151
Query 199 EQLIVQGNKEISAFQLQQAQELEAWQRWLWHR---YFHQDFLDIQNIDDLFWQVLEQPQT 255
+L + WQ+ +W R Y I + +L + +++ Q
Sbjct 152 TRL------------------KQKWQQIIWMRIIKYTKDANKPILHFSNLLYDSIKKMQR 193
Query 256 RDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILH----YNPSQEYWADSVDPL 311
+ +LP +I +F + + P FL+ + +Y V + YN Q + +
Sbjct 194 NNFINTKLPVRIFIFNITPITPQYAIFLKSISKYCSVHFFYATASYNDKQMFSTSFIK-- 251
Query 312 WKQRYDVRVKQRFI-----EKNPAATDVDIAQFFEQFTLHFNAEARESRHPLLTRLGKQA 366
+KQ ++ Q KN +++ Q +F ++ E L K
Sbjct 252 FKQTQEISNNQLLSLLHSKNKNIIYHEIENFQKNTKFQSYWITYEYEQMLFLSLIKDKTI 311
Query 367 RDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLA-------EPQAGRYTLEP 419
+F + N +LL +Q+ ILNL E + + +
Sbjct 312 NLNFKIKQN-------------------SLLQYLQNKILNLHSIQKKNNEQENNKILILK 352
Query 420 SDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPNDILVVVPNIKEIEPLIRSVF 479
+D+S+ H CH+ +R++EVL + L++ L+ N+D + D+LV+ N+ P I +F
Sbjct 353 TDKSLSIHSCHTLIREIEVLHNNLLNILNDNNDILFQ---DVLVISKNLDTYIPYINQIF 409
Query 480 PATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFADWLSLPATQVCYD 539
+ S + F+P I+ + + ++ +L + L L+ + + L++P
Sbjct 410 NSASSKN--FIPFSIN-YKNIKNIEFYKTILELIDLPNIELNINKITNLLNIPTLLKKVQ 466
Query 540 LEDSQIKRMLALLAGAGFKRGFDIHHLQQSLSAED---HDDRYSFKFALDRLALGIAIP- 595
+ + +I +L ++ +I ++ + D +D ++ L R+ LG I
Sbjct 467 INEQEIPILLQII------NQTEIQWENDNILSNDWLSNDITKCWEHGLQRIFLGQIINN 520
Query 596 -EHTLFQGVLSYSGVTPDDFELIGKLIQIYQDIDARRNW--VLAHEQGTQHSVEDWLKIL 652
++ ++ ++ Y+ + + + KLI + I W +L+ + H + K+L
Sbjct 521 IDYKFWENIVPYNEFSTLYYNIFNKLISL---ISLLNKWKKILSKPKFLSHWDITFKKLL 577
Query 653 MQDVIEFEQAGVVALKTAREIIKKQERMVTLASFYADKDAHTLRQIALPLPYILDEIQRT 712
+ EQ A+ IIKK ++ ++ ++I++ L + +E+ +
Sbjct 578 NDFFTDHEQ----KQPEAKLIIKKWTEII-----HSGMQEKYTKKISITL--LKNELCNS 626
Query 713 LEHQS-AQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLMDALR 768
+ + S + +G+ITF + +P++++ ++ L+ N +H FD+ + L+
Sbjct 627 VSYISQSNYLFSGKITFCNNFTLTNIPFKIIYLIGLNDNISSN--THESFDIYNLLK 681
Score = 24.3 bits (51), Expect = 0.36
Identities = 23/101 (23%), Positives = 39/101 (39%), Gaps = 16/101 (16%)
Query 1008 LLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQDWVSLEASSARAKRIAKVWLEY 1067
LL + ++P +H W ++ LN +H E AK I K W E
Sbjct 552 LLNKWKKILSKPKFLSH--WDITFKKLLNDFFTDH--------EQKQPEAKLIIKKWTEI 601
Query 1068 LLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQARDYL 1108
+ + G + ++I + + +C VS I +YL
Sbjct 602 I------HSGMQEKYTKKISITLLKNELCNSVSYISQSNYL 636
Score = 23.5 bits (49), Expect = 0.62
Identities = 19/53 (36%), Positives = 29/53 (55%), Gaps = 7/53 (13%)
Query 1137 AKQYHWVQQSDQFQLVEKDLLNILKEWQDPKAYMQIDTSQLESSQYHLDWSFI 1189
AK+Y V + +F ++ +LNILK+ PK Y S+ E S+Y + W I
Sbjct 51 AKKYK-VCTNIKFFKLKHFILNILKQ-NTPKLY-----SKSEFSKYSIMWKII 96
Score = 21.9 bits (45), Expect = 1.8
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 5/75 (7%)
Query 1051 EASSARAKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQARDYLTQ 1110
+A+ + I WLE+LL+ S + ++ ++ + Q + + + A+ YL +
Sbjct 954 KATKLSFQDIISCWLEHLLYCSLYKKHNS-----ILIGTNHQIITFYKLENKTAKYYLKK 1008
Query 1111 WLKMWQVASTQPVVL 1125
++ + QP++L
Sbjct 1009 YISGYFDGMEQPILL 1023
Lambda K H a alpha
0.323 0.137 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7302477
Database: eebdf67c89d1528edbeb0bda04ea1538.SwissProt.fasta
Posted date: May 20, 2024 6:59 AM
Number of letters in database: 6,633
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
