BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: cd67a053a2c20954161a71a4e44d28c2.SwissProt.fasta
16 sequences; 1,046 total letters
Query= ACIAD0419
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
Q6FEZ6 DNA gyrase inhibitor YacG [Acinetobacter baylyi (strain AT... 153 3e-55
Q74DU7 DNA gyrase inhibitor YacG [Geobacter sulfurreducens (strai... 71.2 1e-22
B5EEE7 DNA gyrase inhibitor YacG [Citrifermentans bemidjiense (st... 66.6 8e-21
C6E808 DNA gyrase inhibitor YacG [Geobacter sp. (strain M21)] 66.2 1e-20
Q88Q66 DNA gyrase inhibitor YacG [Pseudomonas putida (strain ATCC... 66.2 1e-20
A5VY79 DNA gyrase inhibitor YacG [Pseudomonas putida (strain ATCC... 66.2 1e-20
B1JF64 DNA gyrase inhibitor YacG [Pseudomonas putida (strain W619)] 65.9 2e-20
C3KE92 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain... 65.5 2e-20
Q4K5X0 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain... 65.1 4e-20
Q1I4U6 DNA gyrase inhibitor YacG [Pseudomonas entomophila (strain... 64.7 5e-20
Q9HVP7 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ... 63.9 1e-19
Q02GQ9 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ... 63.9 1e-19
B7V073 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ... 63.9 1e-19
A6VBR6 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ... 63.9 1e-19
P0A8H8 DNA gyrase inhibitor YacG [Escherichia coli (strain K12)] 61.2 1e-18
Q50961 DNA gyrase inhibitor YacG [Neisseria gonorrhoeae] 52.0 6e-15
>Q6FEZ6 DNA gyrase inhibitor YacG [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=68
Score = 153 bits (387), Expect = 3e-55
Identities = 68/68 (100%), Positives = 68/68 (100%), Gaps = 0/68 (0%)
Query 1 MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG 60
MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG
Sbjct 1 MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG 60
Query 61 QHSDDYED 68
QHSDDYED
Sbjct 61 QHSDDYED 68
>Q74DU7 DNA gyrase inhibitor YacG [Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA)]
Length=59
Score = 71.2 bits (173), Expect = 1e-22
Identities = 29/51 (57%), Positives = 35/51 (69%), Gaps = 0/51 (0%)
Query 6 MPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPT 56
M T CPRC +VWEGN RPFCS RCK +DL AWA EEY++ +AP+
Sbjct 1 MITTLTCPRCRAETVWEGNPHRPFCSARCKTVDLAAWADEEYRIAGPEAPS 51
>B5EEE7 DNA gyrase inhibitor YacG [Citrifermentans bemidjiense
(strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)]
Length=62
Score = 66.6 bits (161), Expect = 8e-21
Identities = 27/57 (47%), Positives = 37/57 (65%), Gaps = 0/57 (0%)
Query 9 TFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD 65
T CP+C + + GN RPFCS+RCK+IDLG WA E Y++ + AP SG + D+
Sbjct 6 TIKCPQCRKETTLAGNPYRPFCSQRCKMIDLGTWADEGYRIPGEKAPESGDEEPGDE 62
>C6E808 DNA gyrase inhibitor YacG [Geobacter sp. (strain M21)]
Length=62
Score = 66.2 bits (160), Expect = 1e-20
Identities = 27/57 (47%), Positives = 37/57 (65%), Gaps = 0/57 (0%)
Query 9 TFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD 65
T CP+C + + GN RPFCS+RCK+IDLG WA E Y++ + AP SG + D+
Sbjct 6 TIKCPQCRKETTLAGNPYRPFCSQRCKMIDLGTWADEGYRIPGEKAPESGGEEPGDE 62
>Q88Q66 DNA gyrase inhibitor YacG [Pseudomonas putida (strain
ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=66
Score = 66.2 bits (160), Expect = 1e-20
Identities = 29/44 (66%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W E N RPFCS+RCKLIDLGAWA+EE+K+
Sbjct 4 PLTVDCPTCGAPVEWSEKNAFRPFCSDRCKLIDLGAWAAEEHKI 47
>A5VY79 DNA gyrase inhibitor YacG [Pseudomonas putida (strain
ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=66
Score = 66.2 bits (160), Expect = 1e-20
Identities = 29/44 (66%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W E N RPFCS+RCKLIDLGAWA+EE+K+
Sbjct 4 PLTVDCPTCGAPVEWSEKNAFRPFCSDRCKLIDLGAWAAEEHKI 47
>B1JF64 DNA gyrase inhibitor YacG [Pseudomonas putida (strain
W619)]
Length=66
Score = 65.9 bits (159), Expect = 2e-20
Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W+ N RPFCS+RCKLIDLGAWA+EE+K+
Sbjct 4 PLTVDCPTCGAPVEWDAKNAFRPFCSDRCKLIDLGAWAAEEHKI 47
>C3KE92 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain
SBW25)]
Length=66
Score = 65.5 bits (158), Expect = 2e-20
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD 65
P T CP CG P W N +RPFCS+RCKLIDLGAWA+EE+K+ AP + S+D
Sbjct 4 PLTVDCPTCGAPVEWTAANLNRPFCSDRCKLIDLGAWAAEEHKIPV--APDAEDELFSED 61
>Q4K5X0 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain
ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=67
Score = 65.1 bits (157), Expect = 4e-20
Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W N +RPFCS+RCKLIDLGAWA+EE+K+
Sbjct 4 PLTVECPTCGAPVEWTAANINRPFCSDRCKLIDLGAWAAEEHKI 47
>Q1I4U6 DNA gyrase inhibitor YacG [Pseudomonas entomophila (strain
L48)]
Length=66
Score = 64.7 bits (156), Expect = 5e-20
Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W E + RPFCS+RCKLIDLGAWA+EE+K+
Sbjct 4 PMTVDCPTCGAPVEWGEKSPFRPFCSDRCKLIDLGAWAAEEHKI 47
>Q9HVP7 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=66
Score = 63.9 bits (154), Expect = 1e-19
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W+ N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct 4 PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI 47
>Q02GQ9 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain
UCBPP-PA14)]
Length=66
Score = 63.9 bits (154), Expect = 1e-19
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W+ N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct 4 PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI 47
>B7V073 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain
LESB58)]
Length=66
Score = 63.9 bits (154), Expect = 1e-19
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W+ N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct 4 PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI 47
>A6VBR6 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain
PA7)]
Length=66
Score = 63.9 bits (154), Expect = 1e-19
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query 7 PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL 49
P T CP CG P W+ N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct 4 PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI 47
>P0A8H8 DNA gyrase inhibitor YacG [Escherichia coli (strain K12)]
Length=65
Score = 61.2 bits (147), Expect = 1e-18
Identities = 30/61 (49%), Positives = 40/61 (66%), Gaps = 6/61 (10%)
Query 9 TFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDDYE 67
T CP CG+ VW E + RPFCS+RC+LIDLG WA+EE ++ P+SG SDD+
Sbjct 6 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI-----PSSGDLSESDDWS 60
Query 68 D 68
+
Sbjct 61 E 61
>Q50961 DNA gyrase inhibitor YacG [Neisseria gonorrhoeae]
Length=69
Score = 52.0 bits (123), Expect = 6e-15
Identities = 23/42 (55%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query 12 CPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKLKTQ 52
CP C VW+ N RPFCS+RCKLIDLG WA +Y + Q
Sbjct 13 CPTCQTAVVWKPENAFRPFCSQRCKLIDLGGWADGKYTVSGQ 54
Lambda K H a alpha
0.324 0.140 0.484 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 34080
Database: cd67a053a2c20954161a71a4e44d28c2.SwissProt.fasta
Posted date: May 20, 2024 12:37 PM
Number of letters in database: 1,046
Number of sequences in database: 16
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40