BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eb9542f1e871ddbc61756b936b352f22.SwissProt.fasta
15 sequences; 4,575 total letters
Query= ACIAD0457
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 102 1e-28
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 101 2e-28
Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli ... 97.4 7e-27
P20668 Transcriptional dual regulator GltC [Bacillus subtilis (st... 92.4 5e-25
P37499 Uncharacterized HTH-type transcriptional regulator YybE [B... 81.3 5e-21
P25544 RuBisCO operon transcriptional regulator [Allochromatium v... 81.3 5e-21
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 78.6 4e-20
P51205 Probable RuBisCO transcriptional regulator [Porphyra purpu... 78.2 7e-20
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat... 77.8 1e-19
Q1XDT2 Probable RuBisCO transcriptional regulator [Neopyropia yez... 77.0 2e-19
P52693 Probable nitrogen assimilation transcriptional activator [... 75.5 6e-19
P03030 Transcriptional activator protein LysR [Escherichia coli (... 74.3 1e-18
Q55459 HTH-type transcriptional activator CmpR [Synechocystis sp.... 71.6 1e-17
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 71.2 2e-17
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 66.6 6e-16
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 102 bits (254), Expect = 1e-28
Identities = 75/281 (27%), Positives = 128/281 (46%), Gaps = 2/281 (1%)
Query 7 RFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEM 66
R YF+ VA+ + KA+ L++S + + I EEEL I LF R ++LT AG
Sbjct 4 RHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDAGHS 63
Query 67 LYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLN 126
+Y K ++ ++I +K+G + +GL + GF VL + +P +T
Sbjct 64 MYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNVTFQ 123
Query 127 ILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTL 186
++ D S + + +D+G+++ P + V+ + V+ P H LA L
Sbjct 124 LVEDGSIKVQEGVGDGSLDIGVVVLPANEDIFHSFTIVKETLMLVVHPSHRLADEKECQL 183
Query 187 SQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLSYL 246
+ D I + V+H+R+M K P I ++ I M+ N+GI LL
Sbjct 184 RELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVSANLGIGLLPE- 242
Query 247 DVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQ 287
+ ++ +++ IPL D I P LA+ R LS A+
Sbjct 243 RICRGLDPEKVKVIPLVDPVI-PWHLAIIWRKDRYLSFAAR 282
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 101 bits (252), Expect = 2e-28
Identities = 60/238 (25%), Positives = 117/238 (49%), Gaps = 0/238 (0%)
Query 6 SRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGE 65
SR +YF+ VA+ G+ +AA LH+S A+ +QI EE L + LF+R ++LT AGE
Sbjct 3 SRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGE 62
Query 66 MLYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITL 125
+ R +E ++ L RG++ + + + F+ ++A + +P ITL
Sbjct 63 VWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITL 122
Query 126 NILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLT 185
+ + + + + +E+DVG+ PV S +L+ + + + V+ HPLA H +
Sbjct 123 QLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPLAVHEQVA 182
Query 186 LSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALL 243
LS+ D + ++ +++ +K +P + +N I + ++++ LL
Sbjct 183 LSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLL 240
>Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli
O157:H7]
Length=299
Score = 97.4 bits (241), Expect = 7e-27
Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 3/299 (1%)
Query 6 SRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGE 65
SR +YF+ VA+ G+ +AA LH+S A+ +QI EE L + LF+R + LT AGE
Sbjct 3 SRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGE 62
Query 66 MLYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITL 125
+ R +E ++ L RG++ + + + F+ ++A + +P ITL
Sbjct 63 VWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPGITL 122
Query 126 NILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLT 185
+ + + + + +E+DVG+ PV +L+ + + + V+ HPLA +
Sbjct 123 QLQEMSQEKIEDLLCRDELDVGIAFAPVHLPELEAIPLLTESLALVVAQHHPLAACEQVA 182
Query 186 LSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLSY 245
LS+ D + ++ +++ +K +P + +N I + ++++ +L +
Sbjct 183 LSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT---SLSTL 239
Query 246 LDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIKFNHA 304
L A + L IPL ++ + L + Q + L L E ++ N +
Sbjct 240 LPAAIATQHDGLKAIPLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALEECADVGENES 298
>P20668 Transcriptional dual regulator GltC [Bacillus subtilis
(strain 168)]
Length=300
Score = 92.4 bits (228), Expect = 5e-25
Identities = 72/276 (26%), Positives = 132/276 (48%), Gaps = 7/276 (3%)
Query 11 YFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSD 70
YFM VA+ ++ +AAD LH++ SA+ RQIA EEEL++ LFER +KLT G+
Sbjct 8 YFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPIGKEFLIH 67
Query 71 VLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTD 130
V K + DE RG +++G +L+ + V++ + E+P + +
Sbjct 68 VKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHVEFLLRQG 127
Query 131 DSDVLINKIITNEIDVGLILDPVVSAQLDV---MSFVEIPIGFVMCPDHPLAQHTHLTLS 187
LI + +ID+ L L PV + D+ + F E I ++ +HPLA+ + L
Sbjct 128 SYKFLIEAVRNRDIDLAL-LGPVPTNFSDITGKILFTE-KIYALVPLNHPLAKQKTVHLI 185
Query 188 QTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLSYLD 247
+ + ++ + V+ + + K+ P T D+ I+ ++ MG+ LL
Sbjct 186 DLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGVTLLPE-S 244
Query 248 VYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLS 283
++ + + IP+E ++ T+ + R+L+
Sbjct 245 TFAETTPRFTVKIPIEFPQVK-RTVGIIKPKNRELA 279
>P37499 Uncharacterized HTH-type transcriptional regulator YybE
[Bacillus subtilis (strain 168)]
Length=292
Score = 81.3 bits (199), Expect = 5e-21
Identities = 59/237 (25%), Positives = 109/237 (46%), Gaps = 6/237 (3%)
Query 10 DYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYS 69
+YF T+A+ ++ KAA L I+ A+ R IA E L + LF+R + L G +
Sbjct 7 EYFQTLARMQHVTKAAKSLSITQPALSRSIARLENHLGVPLFDRQGRSISLNQYGHIFLR 66
Query 70 DVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILT 129
V KEY + + +G + LG + L V D++ + Q E+P I+ +
Sbjct 67 RVQAMMKEYTEGKEEIQALLKPDQGVVSLGFLHTLGTTLVPDLIGSFQQEYPNISFQLKQ 126
Query 130 DDSDVLINKIITNEIDVGLI--LDPVVSAQLDVMSFVEIPIGFVMCP-DHPLAQHTHLTL 186
+ S L+ ++ + ++D+ L+ + P Q + E+ FV P DHPLA +TL
Sbjct 127 NHSYWLLERLKSGDLDLCLLASIKPENPIQWIKLWSEEL---FVFVPNDHPLASRESITL 183
Query 187 SQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALL 243
++ R I+ + + V +++K + P + + + +GI++L
Sbjct 184 NEIAGERFILLKKGYALRMTVDELFEKANIQPNIMFEGEEATTAAGFVAAGLGISIL 240
>P25544 RuBisCO operon transcriptional regulator [Allochromatium
vinosum]
Length=302
Score = 81.3 bits (199), Expect = 5e-21
Identities = 53/256 (21%), Positives = 126/256 (49%), Gaps = 9/256 (4%)
Query 12 FMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDV 71
F VA+ + +AA++LH+S AV Q+ E+E+ ++LFERL + LT AG +V
Sbjct 11 FEAVARHNSYTRAAEELHLSQPAVSMQVRQLEDEIGLSLFERLGKQVVLTEAGR----EV 66
Query 72 LRWQKEYKQTCMRFDEI----QGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNI 127
+ + Q+ +E+ +G+ RG++ + +A+ + F ++A Q I L +
Sbjct 67 FHYSRAIGQSLREMEEVLESLKGVSRGSLRIA-VASTVNYFAPRLMAIFQQRHSGIGLRL 125
Query 128 LTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTLS 187
+ + L+ + +N +D+ L+ P + +++ +F++ P+ + PDHPLA ++L+
Sbjct 126 DVTNRESLVQMLDSNSVDLVLMGVPPRNVEVEAEAFMDNPLVVIAPPDHPLAGERAISLA 185
Query 188 QTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLSYLD 247
+ + ++ ++ + + + ++ ++ +G++++S
Sbjct 186 RLAEETFVMREEGSGTRQAMERFFSERGQTIRHGMQMTRNEAVKQAVRSGLGLSVVSLHT 245
Query 248 VYSAVEKQELIFIPLE 263
+ +E + L+ + +E
Sbjct 246 IELELETRRLVTLDVE 261
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 78.6 bits (192), Expect = 4e-20
Identities = 62/256 (24%), Positives = 124/256 (48%), Gaps = 9/256 (4%)
Query 11 YFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSD 70
YF+ VA+ N +AA++LH S ++ QI E + + L R + LT AGE D
Sbjct 8 YFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAAGECFLQD 67
Query 71 VLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTD 130
L ++ + +R +I R + +G + + + VL + P + +++
Sbjct 68 ALAILEQAENAKLRARKIVQEDR-QLTIGFVPSAEVNLLPKVLPMFRLRQPDTLIELVSL 126
Query 131 DSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTLSQTL 190
+ KI E+DVGL+ PV S ++D + + P+ V+ DHPLA +T +Q L
Sbjct 127 ITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKEITAAQ-L 185
Query 191 DTRHIVPDQPLV---IHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALL-SYL 246
D + V P+ + V A + + ++ P + ++ +I + +++ +G+ L+ Y+
Sbjct 186 DGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTLIPGYM 245
Query 247 DVYSAVEKQELIFIPL 262
+ ++ +++F P+
Sbjct 246 NNFNT---GQVVFRPI 258
>P51205 Probable RuBisCO transcriptional regulator [Porphyra purpurea]
Length=317
Score = 78.2 bits (191), Expect = 7e-20
Identities = 56/271 (21%), Positives = 124/271 (46%), Gaps = 6/271 (2%)
Query 15 VAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVLRW 74
+AK G+ +KAA+ L++S A+ QI E +L++ALFER LT AG +L R
Sbjct 17 IAKEGSFKKAANSLYVSQPAISLQIQNLERQLNVALFERGNKKATLTEAGSLLLRYGGRI 76
Query 75 QKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDSDV 134
++TC D++Q L+ G + +G + ++ + +P + + + + +
Sbjct 77 LALCEETCRALDDLQNLQGGTLIIGASQTTGTYLMPRLIGLFRQRYPQVAVQLQVHSTRL 136
Query 135 LINKIITNEIDVGLILDPVVSAQLDVM---SFVEIPIGFVMCPDHPLAQHTHLTLSQTLD 191
+ + ++D+ +I V + DV+ S+ E + ++ HP ++ +
Sbjct 137 ISWSVANGQVDLAIIGGEVPTELQDVLQVTSYAEDELALILPKSHPFSKLGDIQKEDLYR 196
Query 192 TRHIVPDQPLVIHDRVMAMYKKYHANPAQITLS---NDIRLIQSMLKKNMGIALLSYLDV 248
R I D I + + ++ + ++ + N I I++ ++ +G A +S +
Sbjct 197 LRFIALDTQSTIRKVIDKVLSQHGIDSSRFKIEMELNSIEAIKNAVQSGLGAAFVSVSAI 256
Query 249 YSAVEKQELIFIPLEDKTIQPLTLALCSGSR 279
+E + + +E+ TI+ + + + +R
Sbjct 257 AKELELGIVHWAQIENVTIKRMLSIIVNPNR 287
>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442
/ H16 / Stanier 337)]
Length=317
Score = 77.8 bits (190), Expect = 1e-19
Identities = 63/235 (27%), Positives = 107/235 (46%), Gaps = 5/235 (2%)
Query 12 FMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDV 71
F+TVA+ + +AA++LH++ AV Q+ E + +ALFER+ L LT G+ L
Sbjct 16 FVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEPGDRLLHHA 75
Query 72 LRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDD 131
R E K ++ +++G+I +GLI+ S F +LA + P + L I +
Sbjct 76 SRILGEVKDAEEGLQAVKDVEQGSITIGLIST-SKYFAPKLLAGFTALHPGVDLRIAEGN 134
Query 132 SDVLINKIITNEIDVGLILDPVVSAQLDVMS--FVEIPIGFVMCPDHPLAQHTHLTLSQT 189
+ L+ + N ID+ L+ P +LD +S P V P HPL L +
Sbjct 135 RETLLRLLQDNAIDLALMGRP--PRELDAVSEPIAAHPHVLVASPRHPLHDAKGFDLQEL 192
Query 190 LDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLS 244
++ + M++ + PA++ I+ + MGI+LLS
Sbjct 193 RHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMGISLLS 247
>Q1XDT2 Probable RuBisCO transcriptional regulator [Neopyropia
yezoensis]
Length=317
Score = 77.0 bits (188), Expect = 2e-19
Identities = 55/271 (20%), Positives = 124/271 (46%), Gaps = 6/271 (2%)
Query 15 VAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVLRW 74
+AK G+ +KAA+ L++S A+ QI E +L+++LFER LT AG +L R
Sbjct 17 IAKEGSFKKAANSLYVSQPAISLQIQNLERQLNVSLFERGNKKATLTEAGSLLLRYGGRI 76
Query 75 QKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDSDV 134
++TC D++Q L+ G + +G + ++ + +P + + + + +
Sbjct 77 LALCEETCRALDDLQNLQGGTLIIGASQTTGTYLMPRLIGLFRQRYPQVAVQLQVHSTRL 136
Query 135 LINKIITNEIDVGLILDPVVSAQLDVM---SFVEIPIGFVMCPDHPLAQHTHLTLSQTLD 191
+ + ++D+ +I V + DV+ S+ E + ++ HP ++ +
Sbjct 137 ISWSVANGQVDLAIIGGEVPTELQDVLQVTSYAEDELALILPKSHPFSKLGDIQKEDLYR 196
Query 192 TRHIVPDQPLVIHDRVMAMYKKYHANPAQITLS---NDIRLIQSMLKKNMGIALLSYLDV 248
R I D I + + ++ + ++ + N I I++ ++ +G A +S +
Sbjct 197 LRFIALDTQSTIRKVIDKVLSQHGIDSSRFKIEMELNSIEAIKNAVQSGLGAAFVSVSAI 256
Query 249 YSAVEKQELIFIPLEDKTIQPLTLALCSGSR 279
+E + + +E+ TI+ + + + +R
Sbjct 257 AKELELGIVHWAQIENVTIKRMLSIIVNPNR 287
>P52693 Probable nitrogen assimilation transcriptional activator
[Synechococcus elongatus (strain ATCC 33912 / PCC 7942 /
FACHB-805)]
Length=309
Score = 75.5 bits (184), Expect = 6e-19
Identities = 60/252 (24%), Positives = 115/252 (46%), Gaps = 4/252 (2%)
Query 13 MTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVL 72
+ VA+TG+ ++AA ++ + S + RQ+ E+EL IALF R +KLT AGE L +
Sbjct 10 LRVAETGSFQEAAQKVGCNQSTISRQVKGLEDELGIALFRR-QGRMKLTAAGERLLPRLR 68
Query 73 RWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDS 132
R +E++ C +E+ ++ + + + ++ ++ VL Q ++P I L + T S
Sbjct 69 RICQEWQTACTEIEELLTGRQTELCMAIADSIGGCYLPAVLNRFQQQWPSIHLRVSTLGS 128
Query 133 DVLINKIITNEIDVGLILDP---VVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTLSQT 189
D + + ID+ +++D SA L V +E + ++ DHPLA + Q
Sbjct 129 DRALKVLRDGLIDLAIVMDSPTLTTSAGLVVDLLLEEEVQVLLSVDHPLADQKAIAWEQL 188
Query 190 LDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALLSYLDVY 249
+V + V +++ N + + ++++ +ALL +
Sbjct 189 SHVPQVVFKDGYGMQRLVEQRFRELGLELNSCLELNSLDSFRGVVREGYWLALLPQAALV 248
Query 250 SAVEKQELIFIP 261
A L+ P
Sbjct 249 DARHDPRLVIRP 260
>P03030 Transcriptional activator protein LysR [Escherichia coli
(strain K12)]
Length=311
Score = 74.3 bits (181), Expect = 1e-18
Identities = 62/272 (23%), Positives = 125/272 (46%), Gaps = 11/272 (4%)
Query 7 RFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEM 66
R + F V G+L +AA LH S V R++A E+ + + LFER+ L T+ G
Sbjct 7 RHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHPTVQGLR 66
Query 67 LYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLN 126
L+ +V R + + ++ ++G + + + S F+ +L + +P ++LN
Sbjct 67 LFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARYPDVSLN 126
Query 127 ILTDDSDVLINKIITNEIDVGL---ILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTH 183
I+ +S +L + D+GL + P + + +++S E+ V+ P HPLA
Sbjct 127 IVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSLDEV---CVLPPGHPLAVKKV 183
Query 184 LTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIALL 243
LT +I + + ++ ++ I ++ + +M++ +GI+++
Sbjct 184 LTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGISVV 243
Query 244 SYLDV--YSA---VEKQELIFIPLEDKTIQPL 270
+ L Y+A V ++ I +P I+PL
Sbjct 244 NPLTALDYAASGLVVRRFSIAVPFTVSLIRPL 275
>Q55459 HTH-type transcriptional activator CmpR [Synechocystis
sp. (strain PCC 6803 / Kazusa)]
Length=304
Score = 71.6 bits (174), Expect = 1e-17
Identities = 59/288 (20%), Positives = 134/288 (47%), Gaps = 16/288 (6%)
Query 10 DYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYS 69
+ F +A+TG+ KAA++L ++ V +Q+ + + + L+E++ + LT AG+ +
Sbjct 10 EVFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIYLTEAGQAVLD 69
Query 70 DVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILT 129
Q ++QGLK+G + L I FV +L + ++P I++++
Sbjct 70 ASKNITSCLDQLQEVIADLQGLKKGNLRLATITT-GKYFVPRLLGEFRQQYPGISISLQI 128
Query 130 DDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTLSQT 189
+ ++ ++ N D+ + P + +++ F+E P+ + HPL + ++L +
Sbjct 129 GNRQQILERLANNLDDLYFLGKPPSNLDINIRHFLENPLVVIASRQHPLVKEKKISLERL 188
Query 190 LDTRHIVPDQPLVIHD----RVMAMYKKYHANPAQITLSNDI---RLIQSMLKKNMGIAL 242
+ ++PL++ + MA+ + + N ++ + +I I+ + +GI++
Sbjct 189 V-------NEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGISI 241
Query 243 LSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLI 290
LS + L + +E +Q + S +QLS +AQ +
Sbjct 242 LSLYSLALEGINGPLAVLDVEGFPLQKHWYIIYQKS-KQLSIVAQTFL 288
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 71.2 bits (173), Expect = 2e-17
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 1/184 (1%)
Query 12 FMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDV 71
F T+ K G+ KAA+ L+ S + ++ E++L + LFER L+LT AG++ Y
Sbjct 9 FHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFER-GKSLQLTKAGKLFYERT 67
Query 72 LRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDD 131
+Y+ +++ + G I +G+ + ++L ++P IT+NI DD
Sbjct 68 GDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDD 127
Query 132 SDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTLSQTLD 191
++ K++ ID + +P + + F + ++ HPLA+ + LS +
Sbjct 128 ANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAVHLSDLAE 187
Query 192 TRHI 195
R I
Sbjct 188 ERFI 191
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 66.6 bits (161), Expect = 6e-16
Identities = 67/283 (24%), Positives = 135/283 (48%), Gaps = 36/283 (13%)
Query 11 YFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSD 70
YF+TV + ++ KAA++L I+ + RQI EEEL I LFER K+T AG Y
Sbjct 8 YFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEAGMFFYQH 67
Query 71 VLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTD 130
++ Q I + + + +G +++L G + +++ + + P I + ++
Sbjct 68 AVQILTHTAQASSMAKRIATVSQ-TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIEC 126
Query 131 DSDVLINKIITNEIDVGL----ILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQHTHLTL 186
+ IN + +ID+G I DP + + V+ ++ LA H H L
Sbjct 127 GTKDQINALKQGKIDLGFGRLKITDPAI--RRIVLHKEQL----------KLAIHKHHHL 174
Query 187 SQTLDTR-HI--VPDQPLVIH---------DRVMAMYKKYHANPAQITLSNDIRLIQSML 234
+Q T H+ + D+P++++ + +++ + P+++T +I+L ++
Sbjct 175 NQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLV 234
Query 235 KKNMGIALL--SYLDVYSAVEKQELIFIP-LEDKTIQPLTLAL 274
G+ ++ S +D + + L++IP L+D P++LA+
Sbjct 235 AAGEGVCIVPASAMD----IGVKNLLYIPILDDDAYSPISLAV 273
Lambda K H a alpha
0.326 0.139 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1033500
Database: eb9542f1e871ddbc61756b936b352f22.SwissProt.fasta
Posted date: Jun 1, 2024 6:25 PM
Number of letters in database: 4,575
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
