BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: aef4e0692feae8af7df13dd5b17c246d.SwissProt.fasta
17 sequences; 9,841 total letters
Query= ACIAD0487
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Q57242 ATP-binding protein Uup [Haemophilus influenzae (strain AT... 621 0.0
P43672 ATP-binding protein Uup [Escherichia coli (strain K12)] 601 0.0
P45167 ATP-binding protein Uup-like [Haemophilus influenzae (stra... 459 4e-160
P57445 ATP-binding protein Uup [Buchnera aphidicola subsp. Acyrth... 417 8e-142
Q8K9I3 ATP-binding protein Uup [Buchnera aphidicola subsp. Schiza... 416 2e-141
Q45978 ATP-binding protein Uup [Caulobacter vibrioides (strain AT... 409 1e-138
O06476 Uncharacterized ABC transporter ATP-binding protein YfmR [... 365 2e-121
P9WQK2 Energy-dependent translational throttle protein EttA [Myco... 348 1e-115
P9WQK3 Energy-dependent translational throttle protein EttA [Myco... 348 1e-115
O05519 Putative ATP-binding protein YdiF [Bacillus subtilis (stra... 310 6e-100
P0A9W5 Energy-dependent translational throttle protein EttA [Shig... 299 1e-96
P0A9W4 Energy-dependent translational throttle protein EttA [Esch... 299 1e-96
P0A9W3 Energy-dependent translational throttle protein EttA [Esch... 299 1e-96
A0A0H2VFI8 Energy-dependent translational throttle protein EttA [... 296 9e-96
P0A9U3 Probable ATP-binding protein YbiT [Escherichia coli (strai... 266 2e-84
P0A9U4 Probable ATP-binding protein YbiT [Escherichia coli O6:H1 ... 266 2e-84
P63389 Probable ATP-binding protein YheS [Escherichia coli (strai... 259 1e-80
>Q57242 ATP-binding protein Uup [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=647
Score = 621 bits (1601), Expect = 0.0
Identities = 328/639 (51%), Positives = 445/639 (70%), Gaps = 11/639 (2%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
MA I+L + L+F LLD A +E E VCL+GRNG GKSTLLK+I G +L D G++
Sbjct 1 MALISLTNGYLSFSDAPLLDHAELHIEPNECVCLVGRNGAGKSTLLKIIAGDVLMDDGKI 60
Query 65 SIQNGLTVSMLAQDVPMDS-GKVADIVADGAGEAAIVLRAYHEASDACVLG-DMEACDRM 122
+ L VS L QD P ++ G + D VA+G G +L+ YH+ S + ++
Sbjct 61 QYEKDLVVSRLEQDPPRNAQGNIFDYVAEGVGHLTDLLKEYHQISVQLEENYSDQILSQL 120
Query 123 GHLQHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLL 182
+Q KL+ DGW ENK+N +L K+GL+P+ L+ LSGG R+ LARAL+ PD+LLL
Sbjct 121 EQVQAKLEHADGWRFENKINEVLLKLGLNPNTKLSALSGGWLRKAALARALVCDPDVLLL 180
Query 183 DEPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYS 242
DEPTNHLDVE+IEWLE FLL+ +++FISHDRSF+ ++ATRIV+LDRG L SY GNY
Sbjct 181 DEPTNHLDVEAIEWLENFLLDFQG-SIVFISHDRSFIRKMATRIVDLDRGQLVSYPGNYD 239
Query 243 RYLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARR 302
YL K + L E QN LF+K+LA+EE WIRQGIKARRTRNEGRVRALK +REE + RR
Sbjct 240 LYLTTKEENLRVEALQNELFDKRLAQEEVWIRQGIKARRTRNEGRVRALKVMREERRQRR 299
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
G + + + RSGK+VF++E++S L++DFS +LRGD+I LVG NG GKT
Sbjct 300 DVMGTAKLQLDTSSRSGKIVFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKT 359
Query 363 TLIKAILGEIEHT-GTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
T IK +LGEI+ T G ++ GT+LE+AYFDQ R L+ EK+VM NV++G +++NG +RH
Sbjct 360 TFIKLLLGEIQPTSGKIRCGTKLEIAYFDQYRADLDPEKTVMDNVADGKQDIEINGVKRH 419
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+ YLQDFLF P+RA TPVKALSGGERNR+LLAKLLLKP+NL+++DEPTNDLD+ TLELL
Sbjct 420 VLGYLQDFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLELL 479
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPN---QTVV 538
EE+L +Y+GTLL++SHDR F+DN T ++F+GKG + +YVGG+ D Q+ N V
Sbjct 480 EEILTDYQGTLLIVSHDRQFIDNTATECYLFEGKGHLNKYVGGFFDAKQQQANFWASKAV 539
Query 539 DQKSEVKKAQ-AKAEAA---NTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDEL 594
+++++ KK++ K E+A + + K VKLS+K+QRELEQLP +E+LE + + L E+
Sbjct 540 EEQAKAKKSEPLKEESAVKNDRTSKPKSVKLSYKEQRELEQLPQLLEELETKITVLQAEI 599
Query 595 ADGSWFLKDATAATQASQRLAEIEEALLEKLERWDELEQ 633
AD ++F + + LA+ E L RW+ELE+
Sbjct 600 ADPAFFQQAHDITDAKLKALADTEAELETAFLRWEELEE 638
>P43672 ATP-binding protein Uup [Escherichia coli (strain K12)]
Length=635
Score = 601 bits (1549), Expect = 0.0
Identities = 320/636 (50%), Positives = 429/636 (67%), Gaps = 5/636 (1%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
M+ I++ L+F LLD A +E ERVCL+GRNG GKSTL+K++ D G +
Sbjct 1 MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI 60
Query 65 SIQNGLTVSMLAQDVPMD-SGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEA-CDRM 122
+ L V+ L QD P + G V D VA+G E A L+ YH+ S + E + +
Sbjct 61 IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNEL 120
Query 123 GHLQHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLL 182
+Q +LD + W LEN++N +L ++GLDP+ L+ LSGG R+ L RAL++ P +LLL
Sbjct 121 AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL 180
Query 183 DEPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYS 242
DEPTNHLD+E+I+WLE FL N T++FISHDRSF+ +ATRIV+LDRG L +Y GNY
Sbjct 181 DEPTNHLDIETIDWLEGFLKTFNG-TIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYD 239
Query 243 RYLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARR 302
+YL K + L EE QNA F++KLA+EE WIRQGIKARRTRNEGRVRALK +R E RR
Sbjct 240 QYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERR 299
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
G M V++A RSGK+VF++E++ + L++DFSA VLRGD+I L+G NG GKT
Sbjct 300 EVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKT 359
Query 363 TLIKAILGEIE-HTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
TL+K +LG+++ +G + GT+LEVAYFDQ R +L+ +K+VM N++EG V VNG+ RH
Sbjct 360 TLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRH 419
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+ YLQDFLF P+RA TPV+ALSGGERNR+LLA+L LKPSNL+++DEPTNDLD+ TLELL
Sbjct 420 VLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPNQTVVDQK 541
EE++ Y+GT+LL+SHDR F+DN VT W+F+G G I YVGGY D Q+ Q V ++
Sbjct 480 EELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQ-EQYVALKQ 538
Query 542 SEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELADGSWFL 601
VKK + A A KLS+K QRELEQLP +E LEA+ L ++AD S+F
Sbjct 539 PAVKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFS 598
Query 602 KDATAATQASQRLAEIEEALLEKLERWDELEQMSKG 637
+ + +A E+ L + ERW+ LE + G
Sbjct 599 QPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNG 634
>P45167 ATP-binding protein Uup-like [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=459
Score = 459 bits (1181), Expect = 4e-160
Identities = 237/451 (53%), Positives = 327/451 (73%), Gaps = 9/451 (2%)
Query 191 VESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLKAQ 250
+E+IEWLE FLL+ +++FISHDRS + ++ATRIV+LDRG L+SY GNY YL K +
Sbjct 1 MEAIEWLENFLLDFQG-SIVFISHDRSVIRKMATRIVDLDRGQLQSYLGNYDLYLTTKEE 59
Query 251 QLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQQGKVNM 310
L E QN LF+K+LA+E+ WIRQGIKARRTRNEGRVRALK +REE + RR G +
Sbjct 60 NLRVEALQNELFDKRLAQEDVWIRQGIKARRTRNEGRVRALKAMREERRQRREVMGTAKL 119
Query 311 GVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG 370
+ + RSGK+VF++E++S L++DFS +LRGD+I LVG NG GKTT IK +LG
Sbjct 120 QLDTSSRSGKIVFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLG 179
Query 371 EIEHT-GTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDF 429
EI+ T G ++ GT+LE+AYFDQ R L+ EK VM NV++G +++NG +RH+ YLQ+F
Sbjct 180 EIQPTSGKIRCGTKLEIAYFDQYRADLDPEKIVMDNVADGKQDIEINGVKRHVLGYLQEF 239
Query 430 LFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEMLAEYK 489
LF P+RA TPVKALSGGERNR+LLAKLLLKP+NL+++DEPTNDLD+ TLELLEE+L +Y+
Sbjct 240 LFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLELLEEILTDYQ 299
Query 490 GTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPN---QTVVDQKSEVKK 546
GTLL++SHDR F+DN T ++F+G+G + +YVGG+ D Q+ N V+++++ KK
Sbjct 300 GTLLIVSHDRQFIDNTATECYLFEGEGRLNKYVGGFFDAKQQQANFWASKAVEEQAKAKK 359
Query 547 AQ-AKAEAA---NTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELADGSWFLK 602
++ K E+A + + K VKLS+K+QRELEQLP +E+LE + +TL E+AD ++F +
Sbjct 360 SEPLKEESAVKNDRTSKPKSVKLSYKEQRELEQLPQLLEELETKITTLQAEIADPAFFQQ 419
Query 603 DATAATQASQRLAEIEEALLEKLERWDELEQ 633
+ LA+ E L RW+ELE+
Sbjct 420 AHDITDAKLKALADTEAELETAFLRWEELEE 450
Score = 106 bits (264), Expect = 2e-27
Identities = 94/297 (32%), Positives = 136/297 (46%), Gaps = 51/297 (17%)
Query 10 LRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNG 69
+ DV G LL + + RG+++ L+G NG GK+T +KL+ G + P G++
Sbjct 134 MEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRCGTK 193
Query 70 LTVSMLAQ-DVPMDSGKVA-DIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMGHLQH 127
L ++ Q +D K+ D VADG + I H +G+LQ
Sbjct 194 LEIAYFDQYRADLDPEKIVMDNVADGKQDIEINGVKRHV---------------LGYLQE 238
Query 128 KLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEPTN 187
L K + P + LSGG + R+LLA+ LL ++L+LDEPTN
Sbjct 239 FL--------------FPPKRAMTP---VKALSGGERNRLLLAKLLLKPNNLLILDEPTN 281
Query 188 HLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELD-RGILRSYEGNYSRYLD 246
LDVE++E LE+ L + TLL +SHDR F+D AT + G L Y G + D
Sbjct 282 DLDVETLELLEEILTDYQG-TLLIVSHDRQFIDNTATECYLFEGEGRLNKYVGG---FFD 337
Query 247 LKAQQLE------AEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVR-ALKDLRE 296
K QQ EE+ A + L EE A +K RT V+ + K+ RE
Sbjct 338 AKQQQANFWASKAVEEQAKAKKSEPLKEESA-----VKNDRTSKPKSVKLSYKEQRE 389
>P57445 ATP-binding protein Uup [Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS)]
Length=596
Score = 417 bits (1072), Expect = 8e-142
Identities = 236/632 (37%), Positives = 381/632 (60%), Gaps = 46/632 (7%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
M+ I + + L+F +L+ + F + + ERVCLIG+NG GKSTLLK+I D G++
Sbjct 1 MSLINIHNASLSFSNLQILEKSTFHINKNERVCLIGKNGAGKSTLLKIINKKQDLDEGQI 60
Query 65 SIQNGLTVSMLAQDVPMDSG-KVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMG 123
+ T + L Q+ P + + D +A G E HE +
Sbjct 61 IYKKNTTTAYLEQNNPKNLNISIYDFIALGLKE--------HEKNKK------------- 99
Query 124 HLQHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLD 183
+H + V K+ I+ + L+ + L+ LSGG R+V L R L+ +PDILLLD
Sbjct 100 --KHTNEIV-------KIEKIIELIKLNKNTLLSHLSGGLLRKVALGRVLVREPDILLLD 150
Query 184 EPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSR 243
EPTNHLD+++I+WLE FL + + ++LF+SHDR+F+ ++TRI++LDRG L S+ G+Y
Sbjct 151 EPTNHLDMKTIKWLETFLKKFSG-SILFVSHDRNFIQNVSTRIIDLDRGKLVSWPGDYEN 209
Query 244 YLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRF 303
++ LK + E+ Q LF+K L +EE WIR+GIKAR TRNEGRV+ LK L++E K +
Sbjct 210 FIKLKNESYRIEKIQKQLFDKNLEKEEQWIRKGIKARSTRNEGRVKKLKILQKEQKDYKK 269
Query 304 QQGKVNMGVQDAQRS-GKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
+ N+ + ++ GK++F ++N+ ++ ++I++FS+++ GD++ L+GDNG GK+
Sbjct 270 IEKINNIEINQSKNYLGKIIFKLDNIDFLVNNKIIIKNFSSIIQHGDKLALIGDNGCGKS 329
Query 363 TLIKAILGEIE-HTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
TLIK I+GE + G + G L+++YFDQ R+ L KS++ N+ G + + +N + +H
Sbjct 330 TLIKIIIGENKPQKGKIYIGKGLKISYFDQNRSFLNPNKSIIENIDYGKEKILLNSREQH 389
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
I YL++FLF P + ++ VK LSGGE NR+LLA+L LKPSN++++DEPTNDLD+ TL+LL
Sbjct 390 IIRYLKNFLFKPNQLKSLVKTLSGGECNRLLLAQLFLKPSNVLILDEPTNDLDLDTLQLL 449
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPNQTVVDQK 541
E+++ YKGT++++SHD+ F+ N W F+ G I + Y ++ N K
Sbjct 450 EKIIIAYKGTVIIVSHDKTFIKNTAKKCWFFEKNGFINTHFSQYDSLKKEKNN----FHK 505
Query 542 SEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELADGSWFL 601
+++K ++K A K+K +FK +EL + EIE +E + TL ++ + +F
Sbjct 506 EKIQKNKSKINL------AIKIKNNFK--KELNAILYEIETIELDIKTLQKKVNEPDFFK 557
Query 602 KDATAATQASQRLAEIEEALLEKLERWDELEQ 633
K + LA+ E L +K+ W++LE+
Sbjct 558 KTLEEKLPTLKMLAQKERKLGKKILFWEKLEK 589
>Q8K9I3 ATP-binding protein Uup [Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg)]
Length=592
Score = 416 bits (1069), Expect = 2e-141
Identities = 244/633 (39%), Positives = 379/633 (60%), Gaps = 47/633 (7%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
M I++++ LAF +L A + + ER+ LIG+NG GKSTLLK+I + D G +
Sbjct 1 MPLISIQNAFLAFSDLEILKNAVLYINKKERISLIGKNGAGKSTLLKVINKNQELDHGSI 60
Query 65 SIQNGLTVSMLAQDVPMDSG-KVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMG 123
Q + +S L QD P + + D + +
Sbjct 61 IYQKNIKISYLKQDNPKNLDISIYDFIKN------------------------------- 89
Query 124 HLQHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLD 183
L+ + ++ ++ I+ +D + L++LSGG R+V+L ALL+QPD+LLLD
Sbjct 90 QLKKENNKEININTIVEIKKIIKTFQIDKHSLLSELSGGSLRKVVLGSALLSQPDVLLLD 149
Query 184 EPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSR 243
EPTNHLD+ +I WLEKFL + + TL FISHDRSF+ L TRI++LDRG L S+ G+Y
Sbjct 150 EPTNHLDINTIAWLEKFLKKFSGTTL-FISHDRSFIQNLCTRIIDLDRGKLTSFPGDYKE 208
Query 244 YLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRF 303
++ LK + E+ + LF++ L +EE WIR+GIKAR TRNEGRVR LK LR+E K +
Sbjct 209 FIKLKKENNRIEKTKKKLFDQHLEKEEIWIRKGIKARTTRNEGRVRNLKVLRKEYKNYKK 268
Query 304 QQGKVNMGVQDAQR-SGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
+ N+ + + + SGK++F ++N+S + +I+ FS+++ GD+IGL+G+NG GK+
Sbjct 269 IENFNNVIINEIKNYSGKIIFKLKNISFFIEKKTIIQSFSSIIQYGDKIGLIGNNGSGKS 328
Query 363 TLIKAILGEIE-HTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
T+IK ++GE + G++ GT+L +AYFDQ R+ L+ KS++ NV+ G + + +NG+ +H
Sbjct 329 TMIKILMGEKKIQKGSIHFGTKLNIAYFDQDRSTLDSNKSILENVNNGREKIVLNGKEQH 388
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+ YL+ FLF P + + VK LSGGE NR+LLAKL LKPSN++++DEPTNDLD+ TLELL
Sbjct 389 LIGYLKKFLFKPNQMKCLVKNLSGGECNRLLLAKLFLKPSNVLILDEPTNDLDLDTLELL 448
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPNQTVVDQK 541
E ++ +Y GT+L++SHDR F++N V W+F G G I + + + +++ N+ + QK
Sbjct 449 ENIIIKYSGTVLIVSHDRNFIENTVNKYWIFKGDGLINTHFSSHNN-IIKEKNKKI--QK 505
Query 542 SEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELADGSWFL 601
V K+ + +VK +EL+++ EIEK+E TL ++ + +F
Sbjct 506 KYVLN-PIKSNISFLKTKQNQVK------KELKKVLNEIEKIENSIKTLKIQMNEPDFFK 558
Query 602 KDATAATQASQRLAEIEEALLEK-LERWDELEQ 633
+ ++ IEE LEK L W+ LE+
Sbjct 559 QHIKNQLPIVKQF-NIEEKKLEKILIYWENLEK 590
>Q45978 ATP-binding protein Uup [Caulobacter vibrioides (strain
ATCC 19089 / CB15)]
Length=608
Score = 409 bits (1052), Expect = 1e-138
Identities = 248/640 (39%), Positives = 358/640 (56%), Gaps = 54/640 (8%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGS-LLPDRGEVSI 66
+ L+DV+LA G L DG + LE R CL+GRNG GKSTLLK++ G + D GE ++
Sbjct 10 LALKDVRLADGAKPLFDGVDLALEPRVRACLVGRNGAGKSTLLKILAGQGVEADSGERAV 69
Query 67 QNGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMGHLQ 126
Q G V ++Q+ + + D G + D EA
Sbjct 70 QPGAKVVYVSQEPEITGETLLDYATAGGAQ------------------DYEA-------- 103
Query 127 HKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEPT 186
L GLDPD LSGG RR LARA QPD+LLLDEPT
Sbjct 104 ---------------QAALADFGLDPDKSAKGLSGGETRRAALARAFAEQPDVLLLDEPT 148
Query 187 NHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLD 246
NHLD+ +I+ LE L + L +SHDR+F++R+ R L+ +R + +S +
Sbjct 149 NHLDIFAIQTLEDELAA-SKCAALIVSHDRAFLNRVTERCFWLEHRKIRRLDKGFSEFEA 207
Query 247 LKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQ-Q 305
+ A+ ++ +K L E AW+ +G++ RR RNEGR RAL LR E K R+ + +
Sbjct 208 WAESIMAADAEEARRLDKVLERENAWLARGVQGRRARNEGRRRALLALRAEKKDRQSELR 267
Query 306 GKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLI 365
G + M V+ A SGK V + + ++ + ++ +FS +LRGDR+ LVG NG GKTTL+
Sbjct 268 GTMTMAVESAGTSGKRVVEAKGVTKRFGERTIVENFSTRILRGDRVALVGPNGAGKTTLV 327
Query 366 KAILGEIEH-TGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGS-DFVDVNGQRRHIY 423
K +LGE+E GTV+ GT LEV+Y DQ R L + +V ++ G D + V G +H+
Sbjct 328 KLLLGELERDAGTVQLGTNLEVSYIDQARMALSDKITVWDFLTPGGGDSIIVRGHPKHVA 387
Query 424 SYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEE 483
Y ++FLF+ + R PV +LSGGERNR+LLA+ L P+NL+V+DEPTNDLDM TL+LLE+
Sbjct 388 GYAKEFLFTDAQLRQPVTSLSGGERNRLLLARALANPTNLMVLDEPTNDLDMDTLDLLED 447
Query 484 MLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPNQTVVDQK-- 541
+LA++ GTL+L+SHDR F+D + +ST DGKG + E GG+ D + Q P+ +
Sbjct 448 LLADFDGTLILVSHDRDFIDRLASSTIALDGKGGVVETPGGWTDLMDQNPDFFKASKGGT 507
Query 542 --SEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELADGSW 599
+ V KA K A AP K KLS+KDQR LE+ I K A + L + LAD +
Sbjct 508 AFAPVSKAATKPAPAAPAAPKKSAKLSYKDQRRLEECEALIAKSPAIIAKLEEALADPNL 567
Query 600 FLKDATAATQASQRL----AEIEEALLEKLERWDELEQMS 635
+ +D + + L A++E+A +E LE ++ E ++
Sbjct 568 YTRDPATFDKTMKALDKARADLEQAEMEWLELEEKKENLA 607
>O06476 Uncharacterized ABC transporter ATP-binding protein YfmR
[Bacillus subtilis (strain 168)]
Length=629
Score = 365 bits (938), Expect = 2e-121
Identities = 226/645 (35%), Positives = 363/645 (56%), Gaps = 37/645 (6%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
M+ + ++ +G L D +F +E ER+ LIG NG GKSTLLK+I G + GE+
Sbjct 1 MSILKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKSTLLKVIAGLESIEEGEI 60
Query 65 SIQNGLTVSMLAQDVPMDSGK-VADIVADGAGEAAIVLRAYHEASDACVLG-DMEACDRM 122
+ + V L QD + +G+ V + + G LR Y +A LG D E R
Sbjct 61 TKSGSVQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYEKA--LYELGKDPENEQRQ 118
Query 123 GHL---QHKLDQVDGWALENKVNTILGKMGL-DPDADLADLSGGRKRRVLLARALLTQPD 178
HL Q K+D + W T+L K+G+ D + +LSGG+K+RV +A+ L+ D
Sbjct 119 KHLLAAQAKMDANNAWDANTLAKTVLSKLGVNDVTKPVNELSGGQKKRVAIAKNLIQPAD 178
Query 179 ILLLDEPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYE 238
+L+LDEPTNHLD E+IEWLE +L + +L ++HDR F++R+ RI EL+RG L +Y+
Sbjct 179 LLILDEPTNHLDNETIEWLEGYLSQYPGAVML-VTHDRYFLNRVTNRIYELERGSLYTYK 237
Query 239 GNYSRYLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREES 298
GNY +L+ +A++ E++ + L E AW+R+G KAR T+ + R+ ++ L+E++
Sbjct 238 GNYEVFLEKRAEREAQAEQKETKRQNLLRRELAWLRRGAKARSTKQKARIDRVETLKEQT 297
Query 299 KARRFQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNG 358
+ G ++ + + R GK V + EN+ ++YD +L+ F+ +V+ G+RIG++G NG
Sbjct 298 GPQ--SSGSLDFAI-GSHRLGKQVIEAENVMIAYDGRMLVDRFNELVIPGERIGIIGPNG 354
Query 359 VGKTTLIKAILGEIEHT---GTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDV 415
+GKTTL+ A+ G HT G + G + + Y+ Q +++ E V+ + E ++ V
Sbjct 355 IGKTTLLNALAGR--HTPDGGDITIGQTVRIGYYTQDHSEMNGELKVIDYIKETAEVVKT 412
Query 416 -NGQRRHIYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLD 474
+G L+ FLF +T ++ LSGGE+ R+ L ++L++ N++ +DEPTNDLD
Sbjct 413 ADGDMITAEQMLERFLFPRSMQQTYIRKLSGGEKRRLYLLQVLMQEPNVLFLDEPTNDLD 472
Query 475 MVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRPN 534
TL +LE+ + ++ G ++ +SHDR F+D VV VF+G G I + G Y DY+
Sbjct 473 TETLSVLEDYIDQFPGVVITVSHDRYFLDRVVDRLIVFEGNGVISRFQGSYSDYM----- 527
Query 535 QTVVDQKSEVKKAQAKAEAANTPAPA----KKVKLSFKDQRELEQLPVEIEKLEAEQSTL 590
++S+ KKA K A A A K+ KLS+KDQ E + + +I +LE + L
Sbjct 528 -----EESKAKKAAPKPAAEEKTAEAEPKKKRKKLSYKDQLEWDGIEDKIAQLEEKHEQL 582
Query 591 -SDELADGSWFLKDATAATQASQRLAEIEEALLEKLERWDELEQM 634
+D A GS F K + ++ E+E A ++RW EL M
Sbjct 583 EADIAAAGSDFGKIQELMAEQAKTAEELEAA----MDRWTELSLM 623
>P9WQK2 Energy-dependent translational throttle protein EttA [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=558
Score = 348 bits (894), Expect = 1e-115
Identities = 198/538 (37%), Positives = 314/538 (58%), Gaps = 19/538 (4%)
Query 9 TLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQN 68
T++ V+ A G +LD G ++ ++G NG GKS++L+++ G P+ G+ +
Sbjct 7 TMKKVRKAHGDKVILDDVTLSFYPGAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDAFLAT 66
Query 69 GLTVSMLAQDVPMDSGK-VADIVADGAGEAAIVLRAYHEASDACVLGDM-EACDRMGHLQ 126
G TV +L Q+ P++ K V V +G G+ I L ++E ++ E + MG LQ
Sbjct 67 GATVGILQQEPPLNEDKTVRGNVEEGMGDIKIKLDRFNEVAELMATDYTDELMEEMGRLQ 126
Query 127 HKLDQVDGWALENKVNTILGKMGLDP-DADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
+LD D W L+ ++ + + P D + +LSGG +RRV L + LL++PD+LLLDEP
Sbjct 127 EELDHADAWDLDAQLEQAMDALRCPPADEPVTNLSGGERRRVALCKLLLSKPDLLLLDEP 186
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYL 245
TNHLD ES++WLE+ L +L ++HDR F+D +A I+ELDRG YEGNYS YL
Sbjct 187 TNHLDAESVQWLEQHLASYPG-AILAVTHDRYFLDNVAEWILELDRGRAYPYEGNYSTYL 245
Query 246 DLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARR--- 302
+ KA++L + +++A +K+L EE AW+R G KAR+ +++ R++ +++ E++ R
Sbjct 246 EKKAERLAVQGRKDAKLQKRLTEELAWVRSGAKARQAKSKARLQRYEEMAAEAEKTRKLD 305
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
F++ ++ +G R G +V ++++L YD LI+D S + R +G++G NGVGKT
Sbjct 306 FEEIQIPVG----PRLGNVVVEVDHLDKGYDGRALIKDLSFSLPRNGIVGVIGPNGVGKT 361
Query 363 TLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
TL K I+G E +G+VK G ++++Y DQ R ++ K+V VS+G D++ V
Sbjct 362 TLFKTIVGLETPDSGSVKVGETVKLSYVDQARAGIDPRKTVWEVVSDGLDYIQVGQTEVP 421
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+Y+ F F + P LSGGERNR+ LA L + NLI++DEPTNDLD+ TL L
Sbjct 422 SRAYVSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKQGGNLILLDEPTNDLDVETLGSL 481
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGS-------IEEYVGGYQDYLLQR 532
E L + G ++ISHDR F+D T ++G E G Y++ ++R
Sbjct 482 ENALLNFPGCAVVISHDRWFLDRTCTHILAWEGDDDNEAKWFWFEGNFGAYEENKVER 539
Score = 109 bits (272), Expect = 4e-28
Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 43/302 (14%)
Query 320 KLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTV 378
+ ++ ++ + ++ +++ D + G +IG+VG NG GK+++++ + G + + G
Sbjct 3 EFIYTMKKVRKAHGDKVILDDVTLSFYPGAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDA 62
Query 379 KTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPE---- 434
T V Q L +K+V NV EG + + R + + L ++ E
Sbjct 63 FLATGATVGILQQ-EPPLNEDKTVRGNVEEGMGDIKIKLDRFNEVAELMATDYTDELMEE 121
Query 435 ------------------------------RARTPVKALSGGERNRVLLAKLLLKPSNLI 464
A PV LSGGER RV L KLLL +L+
Sbjct 122 MGRLQEELDHADAWDLDAQLEQAMDALRCPPADEPVTNLSGGERRRVALCKLLLSKPDLL 181
Query 465 VMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVG 523
++DEPTN LD +++ LE+ LA Y G +L ++HDR F+DNV + W+ + +G Y G
Sbjct 182 LLDEPTNHLDAESVQWLEQHLASYPGAILAVTHDRYFLDNV--AEWILELDRGRAYPYEG 239
Query 524 GYQDYLLQRPNQTVVDQKSEVKKAQAKAEA---ANTPAPAKKVKLSFKDQRELEQLPVEI 580
Y YL ++ + V + + K + E + A A++ K + QR E++ E
Sbjct 240 NYSTYLEKKAERLAVQGRKDAKLQKRLTEELAWVRSGAKARQAKSKARLQR-YEEMAAEA 298
Query 581 EK 582
EK
Sbjct 299 EK 300
>P9WQK3 Energy-dependent translational throttle protein EttA [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=558
Score = 348 bits (894), Expect = 1e-115
Identities = 198/538 (37%), Positives = 314/538 (58%), Gaps = 19/538 (4%)
Query 9 TLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQN 68
T++ V+ A G +LD G ++ ++G NG GKS++L+++ G P+ G+ +
Sbjct 7 TMKKVRKAHGDKVILDDVTLSFYPGAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDAFLAT 66
Query 69 GLTVSMLAQDVPMDSGK-VADIVADGAGEAAIVLRAYHEASDACVLGDM-EACDRMGHLQ 126
G TV +L Q+ P++ K V V +G G+ I L ++E ++ E + MG LQ
Sbjct 67 GATVGILQQEPPLNEDKTVRGNVEEGMGDIKIKLDRFNEVAELMATDYTDELMEEMGRLQ 126
Query 127 HKLDQVDGWALENKVNTILGKMGLDP-DADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
+LD D W L+ ++ + + P D + +LSGG +RRV L + LL++PD+LLLDEP
Sbjct 127 EELDHADAWDLDAQLEQAMDALRCPPADEPVTNLSGGERRRVALCKLLLSKPDLLLLDEP 186
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYL 245
TNHLD ES++WLE+ L +L ++HDR F+D +A I+ELDRG YEGNYS YL
Sbjct 187 TNHLDAESVQWLEQHLASYPG-AILAVTHDRYFLDNVAEWILELDRGRAYPYEGNYSTYL 245
Query 246 DLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARR--- 302
+ KA++L + +++A +K+L EE AW+R G KAR+ +++ R++ +++ E++ R
Sbjct 246 EKKAERLAVQGRKDAKLQKRLTEELAWVRSGAKARQAKSKARLQRYEEMAAEAEKTRKLD 305
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
F++ ++ +G R G +V ++++L YD LI+D S + R +G++G NGVGKT
Sbjct 306 FEEIQIPVG----PRLGNVVVEVDHLDKGYDGRALIKDLSFSLPRNGIVGVIGPNGVGKT 361
Query 363 TLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
TL K I+G E +G+VK G ++++Y DQ R ++ K+V VS+G D++ V
Sbjct 362 TLFKTIVGLETPDSGSVKVGETVKLSYVDQARAGIDPRKTVWEVVSDGLDYIQVGQTEVP 421
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+Y+ F F + P LSGGERNR+ LA L + NLI++DEPTNDLD+ TL L
Sbjct 422 SRAYVSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKQGGNLILLDEPTNDLDVETLGSL 481
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGS-------IEEYVGGYQDYLLQR 532
E L + G ++ISHDR F+D T ++G E G Y++ ++R
Sbjct 482 ENALLNFPGCAVVISHDRWFLDRTCTHILAWEGDDDNEAKWFWFEGNFGAYEENKVER 539
Score = 109 bits (272), Expect = 4e-28
Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 43/302 (14%)
Query 320 KLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTV 378
+ ++ ++ + ++ +++ D + G +IG+VG NG GK+++++ + G + + G
Sbjct 3 EFIYTMKKVRKAHGDKVILDDVTLSFYPGAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDA 62
Query 379 KTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPE---- 434
T V Q L +K+V NV EG + + R + + L ++ E
Sbjct 63 FLATGATVGILQQ-EPPLNEDKTVRGNVEEGMGDIKIKLDRFNEVAELMATDYTDELMEE 121
Query 435 ------------------------------RARTPVKALSGGERNRVLLAKLLLKPSNLI 464
A PV LSGGER RV L KLLL +L+
Sbjct 122 MGRLQEELDHADAWDLDAQLEQAMDALRCPPADEPVTNLSGGERRRVALCKLLLSKPDLL 181
Query 465 VMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVG 523
++DEPTN LD +++ LE+ LA Y G +L ++HDR F+DNV + W+ + +G Y G
Sbjct 182 LLDEPTNHLDAESVQWLEQHLASYPGAILAVTHDRYFLDNV--AEWILELDRGRAYPYEG 239
Query 524 GYQDYLLQRPNQTVVDQKSEVKKAQAKAEA---ANTPAPAKKVKLSFKDQRELEQLPVEI 580
Y YL ++ + V + + K + E + A A++ K + QR E++ E
Sbjct 240 NYSTYLEKKAERLAVQGRKDAKLQKRLTEELAWVRSGAKARQAKSKARLQR-YEEMAAEA 298
Query 581 EK 582
EK
Sbjct 299 EK 300
>O05519 Putative ATP-binding protein YdiF [Bacillus subtilis (strain
168)]
Length=642
Score = 310 bits (794), Expect = 6e-100
Identities = 200/650 (31%), Positives = 340/650 (52%), Gaps = 36/650 (6%)
Query 5 MAYITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV 64
M + + + +FG +L+ + +R+ ++GRNG GKSTLLK+I G L ++GE+
Sbjct 1 MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEI 60
Query 65 SIQNGLTVSMLAQDVPMDSGKVAD----IVADGAGEAAIVLRAYHEASDACVLGDMEACD 120
+T+ LAQ +DS V D +RA E A G++E+
Sbjct 61 IKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIM 120
Query 121 RM-GHLQHKLDQVDGWALENKVNTILGKMGL---DPDADLADLSGGRKRRVLLARALLTQ 176
+ LQ + G+ E V ++L +G D + LSGG+K R+ L + LLTQ
Sbjct 121 KTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQ 180
Query 177 PDILLLDEPTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRS 236
PD+L+LDEPTNHLD++++ WLE +L + +L +SHDR F+D++ ++ E+ R +
Sbjct 181 PDLLILDEPTNHLDIDTLTWLEHYLQGYSG-AILIVSHDRYFLDKVVNQVYEVSRAESKK 239
Query 237 YEGNYSRYLDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKDLRE 296
Y GNYS YLD KA Q E + K + ++A+ + ++ + + T + R + R
Sbjct 240 YHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERM 299
Query 297 ESKARRFQQGK-VNMGVQDAQRSGKLVFDIENLSVSYDSNL-LIRDFSAVVLRGDRIGLV 354
+ ++ K N ++SG V +++L++SY++ L+ + S ++ RG+ LV
Sbjct 300 DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALV 359
Query 355 GDNGVGKTTLIKAILGEIE-HTGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFV 413
G NG+GK+TL+K ++ ++ GT+ G+ + V Y+DQ + +L K V+ + + +
Sbjct 360 GPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYPGL 419
Query 414 DVNGQRRHIYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDL 473
+ I + L +FLFS + PV +LSGGE+ R+ LAKL+L+ +N +++DEPTN L
Sbjct 420 P----EKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHL 475
Query 474 DMVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQRP 533
D+ + E+LE L +Y GTLL +SHDR F++ + T IEEY+G Y Y ++
Sbjct 476 DLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLEL-SSSHIEEYLGDYDYYTEKKT 534
Query 534 NQTVVDQKSEVKKAQAKAEAANTPAPAKK-VKLSFKDQRE-----------LEQLPVEIE 581
Q E++K + E TPA K K S+++++E +E++ ++
Sbjct 535 EQL------ELEKMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQRLRRIEEIETTVQ 588
Query 582 KLEAEQSTLSDELADGSWFLKDATAATQASQRLAEIEEALLEKLERWDEL 631
+E E + +DEL +D ++ + L L W+EL
Sbjct 589 TIE-ENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEEL 637
>P0A9W5 Energy-dependent translational throttle protein EttA [Shigella
flexneri]
Length=555
Score = 299 bits (765), Expect = 1e-96
Identities = 181/504 (36%), Positives = 282/504 (56%), Gaps = 13/504 (3%)
Query 33 GERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLAQDVPMD-SGKVADIVA 91
G ++ ++G NG GKSTLL+++ G GE Q + + L Q+ ++ V + +
Sbjct 32 GAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIE 91
Query 92 DGAGEAAIVLRAYHEASDACVLGDMEA-CDRMGHLQHKLDQV----DGWALENKVNTILG 146
+ E L+ E + D +A D++ Q +L+++ DG L ++
Sbjct 92 EAVSEVVNALKRLDEVY--ALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAAD 149
Query 147 KMGL-DPDADLADLSGGRKRRVLLARALLTQPDILLLDEPTNHLDVESIEWLEKFLLEQN 205
+ L D DA +A+LSGG +RRV L R LL +PD+LLLDEPTNHLD ES+ WLE+FL +
Sbjct 150 ALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFE 209
Query 206 NLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLKAQQLEAEEKQNALFEKK 265
T++ I+HDR F+D +A I+ELDRG +EGNYS +L+ K Q+L E Q A K
Sbjct 210 G-TVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKS 268
Query 266 LAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQQGKVNMGVQDAQRSGKLVFDI 325
+ +E W+RQG K R+++ + R+ ++L +R + + + + R G V ++
Sbjct 269 IEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNE--LFIPPGPRLGDKVLEV 326
Query 326 ENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIE-HTGTVKTGTQL 384
NL SY LLI D S + +G +G++G NG GK+TL + I G+ + +GT+ G +
Sbjct 327 SNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETV 386
Query 385 EVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPERARTPVKALS 444
++A DQ R+ ++ K+V VS G D + + +Y+ F F V LS
Sbjct 387 KLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELS 446
Query 445 GGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDN 504
GGER R+ LAKLL N++++DEPTNDLD+ TL LE L E+ G ++ISHDR F+D
Sbjct 447 GGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDR 506
Query 505 VVTSTWVFDGKGSIEEYVGGYQDY 528
+ T + +G +E + G + +Y
Sbjct 507 IATHILDYQDEGKVEFFEGNFTEY 530
Score = 108 bits (270), Expect = 7e-28
Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 36/251 (14%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQ 67
+ + +++ ++G L+D +F + +G V +IG NG GKSTL ++I G PD G +++
Sbjct 324 LEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL- 382
Query 68 NGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDR--MGHL 125
G TV + + D DS + V + +++ +G+ E R +G
Sbjct 383 -GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMK----------IGNTEMPSRAYVGRF 431
Query 126 QHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
K G+D + +LSGG + R+ LA+ L ++LLLDEP
Sbjct 432 NFK--------------------GVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEP 471
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVEL-DRGILRSYEGNYSRY 244
TN LD+E++ LE LLE ++ ISHDR F+DR+AT I++ D G + +EGN++ Y
Sbjct 472 TNDLDIETLRALENALLEFPGCAMV-ISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEY 530
Query 245 LDLKAQQLEAE 255
+ K + L A+
Sbjct 531 EEYKKRTLGAD 541
Score = 90.5 bits (223), Expect = 5e-22
Identities = 67/251 (27%), Positives = 123/251 (49%), Gaps = 41/251 (16%)
Query 337 LIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQ 395
++++ S G +IG++G NG GK+TL++ + G + + G + +++ Y Q Q
Sbjct 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQ-EPQ 79
Query 396 LELEKSVMANVSEG----------------------SDFVDVNGQRRHIYSYLQ-----D 428
L E +V ++ E +DF + ++ + +Q +
Sbjct 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHN 139
Query 429 FLFSPERA----RTP-----VKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLE 479
ERA R P + LSGGER RV L +LLL+ +++++DEPTN LD ++
Sbjct 140 LNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 199
Query 480 LLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVGGYQDYLLQRPNQTVV 538
LE L +++GT++ I+HDR F+DNV + W+ + +G + G Y +L Q+ +
Sbjct 200 WLERFLHDFEGTVVAITHDRYFLDNV--AGWILELDRGEGIPWEGNYSSWLEQKDQRLAQ 257
Query 539 DQKSEVKKAQA 549
+ E + ++
Sbjct 258 EASQEAARRKS 268
>P0A9W4 Energy-dependent translational throttle protein EttA [Escherichia
coli O157:H7]
Length=555
Score = 299 bits (765), Expect = 1e-96
Identities = 181/504 (36%), Positives = 282/504 (56%), Gaps = 13/504 (3%)
Query 33 GERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLAQDVPMD-SGKVADIVA 91
G ++ ++G NG GKSTLL+++ G GE Q + + L Q+ ++ V + +
Sbjct 32 GAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIE 91
Query 92 DGAGEAAIVLRAYHEASDACVLGDMEA-CDRMGHLQHKLDQV----DGWALENKVNTILG 146
+ E L+ E + D +A D++ Q +L+++ DG L ++
Sbjct 92 EAVSEVVNALKRLDEVY--ALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAAD 149
Query 147 KMGL-DPDADLADLSGGRKRRVLLARALLTQPDILLLDEPTNHLDVESIEWLEKFLLEQN 205
+ L D DA +A+LSGG +RRV L R LL +PD+LLLDEPTNHLD ES+ WLE+FL +
Sbjct 150 ALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFE 209
Query 206 NLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLKAQQLEAEEKQNALFEKK 265
T++ I+HDR F+D +A I+ELDRG +EGNYS +L+ K Q+L E Q A K
Sbjct 210 G-TVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKS 268
Query 266 LAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQQGKVNMGVQDAQRSGKLVFDI 325
+ +E W+RQG K R+++ + R+ ++L +R + + + + R G V ++
Sbjct 269 IEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNE--LFIPPGPRLGDKVLEV 326
Query 326 ENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIE-HTGTVKTGTQL 384
NL SY LLI D S + +G +G++G NG GK+TL + I G+ + +GT+ G +
Sbjct 327 SNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETV 386
Query 385 EVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPERARTPVKALS 444
++A DQ R+ ++ K+V VS G D + + +Y+ F F V LS
Sbjct 387 KLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELS 446
Query 445 GGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDN 504
GGER R+ LAKLL N++++DEPTNDLD+ TL LE L E+ G ++ISHDR F+D
Sbjct 447 GGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDR 506
Query 505 VVTSTWVFDGKGSIEEYVGGYQDY 528
+ T + +G +E + G + +Y
Sbjct 507 IATHILDYQDEGKVEFFEGNFTEY 530
Score = 108 bits (270), Expect = 7e-28
Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 36/251 (14%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQ 67
+ + +++ ++G L+D +F + +G V +IG NG GKSTL ++I G PD G +++
Sbjct 324 LEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL- 382
Query 68 NGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDR--MGHL 125
G TV + + D DS + V + +++ +G+ E R +G
Sbjct 383 -GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMK----------IGNTEMPSRAYVGRF 431
Query 126 QHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
K G+D + +LSGG + R+ LA+ L ++LLLDEP
Sbjct 432 NFK--------------------GVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEP 471
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVEL-DRGILRSYEGNYSRY 244
TN LD+E++ LE LLE ++ ISHDR F+DR+AT I++ D G + +EGN++ Y
Sbjct 472 TNDLDIETLRALENALLEFPGCAMV-ISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEY 530
Query 245 LDLKAQQLEAE 255
+ K + L A+
Sbjct 531 EEYKKRTLGAD 541
Score = 90.5 bits (223), Expect = 5e-22
Identities = 67/251 (27%), Positives = 123/251 (49%), Gaps = 41/251 (16%)
Query 337 LIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQ 395
++++ S G +IG++G NG GK+TL++ + G + + G + +++ Y Q Q
Sbjct 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQ-EPQ 79
Query 396 LELEKSVMANVSEG----------------------SDFVDVNGQRRHIYSYLQ-----D 428
L E +V ++ E +DF + ++ + +Q +
Sbjct 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHN 139
Query 429 FLFSPERA----RTP-----VKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLE 479
ERA R P + LSGGER RV L +LLL+ +++++DEPTN LD ++
Sbjct 140 LNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 199
Query 480 LLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVGGYQDYLLQRPNQTVV 538
LE L +++GT++ I+HDR F+DNV + W+ + +G + G Y +L Q+ +
Sbjct 200 WLERFLHDFEGTVVAITHDRYFLDNV--AGWILELDRGEGIPWEGNYSSWLEQKDQRLAQ 257
Query 539 DQKSEVKKAQA 549
+ E + ++
Sbjct 258 EASQEAARRKS 268
>P0A9W3 Energy-dependent translational throttle protein EttA [Escherichia
coli (strain K12)]
Length=555
Score = 299 bits (765), Expect = 1e-96
Identities = 181/504 (36%), Positives = 282/504 (56%), Gaps = 13/504 (3%)
Query 33 GERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLAQDVPMD-SGKVADIVA 91
G ++ ++G NG GKSTLL+++ G GE Q + + L Q+ ++ V + +
Sbjct 32 GAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIE 91
Query 92 DGAGEAAIVLRAYHEASDACVLGDMEA-CDRMGHLQHKLDQV----DGWALENKVNTILG 146
+ E L+ E + D +A D++ Q +L+++ DG L ++
Sbjct 92 EAVSEVVNALKRLDEVY--ALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAAD 149
Query 147 KMGL-DPDADLADLSGGRKRRVLLARALLTQPDILLLDEPTNHLDVESIEWLEKFLLEQN 205
+ L D DA +A+LSGG +RRV L R LL +PD+LLLDEPTNHLD ES+ WLE+FL +
Sbjct 150 ALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFE 209
Query 206 NLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLKAQQLEAEEKQNALFEKK 265
T++ I+HDR F+D +A I+ELDRG +EGNYS +L+ K Q+L E Q A K
Sbjct 210 G-TVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKS 268
Query 266 LAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQQGKVNMGVQDAQRSGKLVFDI 325
+ +E W+RQG K R+++ + R+ ++L +R + + + + R G V ++
Sbjct 269 IEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNE--LFIPPGPRLGDKVLEV 326
Query 326 ENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIE-HTGTVKTGTQL 384
NL SY LLI D S + +G +G++G NG GK+TL + I G+ + +GT+ G +
Sbjct 327 SNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETV 386
Query 385 EVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPERARTPVKALS 444
++A DQ R+ ++ K+V VS G D + + +Y+ F F V LS
Sbjct 387 KLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELS 446
Query 445 GGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDN 504
GGER R+ LAKLL N++++DEPTNDLD+ TL LE L E+ G ++ISHDR F+D
Sbjct 447 GGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDR 506
Query 505 VVTSTWVFDGKGSIEEYVGGYQDY 528
+ T + +G +E + G + +Y
Sbjct 507 IATHILDYQDEGKVEFFEGNFTEY 530
Score = 108 bits (270), Expect = 7e-28
Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 36/251 (14%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQ 67
+ + +++ ++G L+D +F + +G V +IG NG GKSTL ++I G PD G +++
Sbjct 324 LEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL- 382
Query 68 NGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDR--MGHL 125
G TV + + D DS + V + +++ +G+ E R +G
Sbjct 383 -GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMK----------IGNTEMPSRAYVGRF 431
Query 126 QHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
K G+D + +LSGG + R+ LA+ L ++LLLDEP
Sbjct 432 NFK--------------------GVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEP 471
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVEL-DRGILRSYEGNYSRY 244
TN LD+E++ LE LLE ++ ISHDR F+DR+AT I++ D G + +EGN++ Y
Sbjct 472 TNDLDIETLRALENALLEFPGCAMV-ISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEY 530
Query 245 LDLKAQQLEAE 255
+ K + L A+
Sbjct 531 EEYKKRTLGAD 541
Score = 90.5 bits (223), Expect = 5e-22
Identities = 67/251 (27%), Positives = 123/251 (49%), Gaps = 41/251 (16%)
Query 337 LIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQ 395
++++ S G +IG++G NG GK+TL++ + G + + G + +++ Y Q Q
Sbjct 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQ-EPQ 79
Query 396 LELEKSVMANVSEG----------------------SDFVDVNGQRRHIYSYLQ-----D 428
L E +V ++ E +DF + ++ + +Q +
Sbjct 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHN 139
Query 429 FLFSPERA----RTP-----VKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLE 479
ERA R P + LSGGER RV L +LLL+ +++++DEPTN LD ++
Sbjct 140 LNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 199
Query 480 LLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVGGYQDYLLQRPNQTVV 538
LE L +++GT++ I+HDR F+DNV + W+ + +G + G Y +L Q+ +
Sbjct 200 WLERFLHDFEGTVVAITHDRYFLDNV--AGWILELDRGEGIPWEGNYSSWLEQKDQRLAQ 257
Query 539 DQKSEVKKAQA 549
+ E + ++
Sbjct 258 EASQEAARRKS 268
>A0A0H2VFI8 Energy-dependent translational throttle protein EttA
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=555
Score = 296 bits (759), Expect = 9e-96
Identities = 180/504 (36%), Positives = 281/504 (56%), Gaps = 13/504 (3%)
Query 33 GERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLAQDVPMD-SGKVADIVA 91
G ++ ++G NG GKSTLL+++ G GE Q + + L Q+ ++ V + +
Sbjct 32 GAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIE 91
Query 92 DGAGEAAIVLRAYHEASDACVLGDMEA-CDRMGHLQHKLDQV----DGWALENKVNTILG 146
+ E L+ E + D +A D++ Q +L+++ DG L ++
Sbjct 92 EAVSEVVNALKRLDEVY--ALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAAD 149
Query 147 KMGL-DPDADLADLSGGRKRRVLLARALLTQPDILLLDEPTNHLDVESIEWLEKFLLEQN 205
+ L D DA +A+LSGG +RRV L R LL +PD+LLLDEPTNHLD ES+ WLE+FL +
Sbjct 150 ALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFE 209
Query 206 NLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLKAQQLEAEEKQNALFEKK 265
T++ I+HDR F+D +A I+ELDRG +EGNYS +L+ K Q+L E Q A K
Sbjct 210 G-TVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKS 268
Query 266 LAEEEAWIRQGIKARRTRNEGRVRALKDLREESKARRFQQGKVNMGVQDAQRSGKLVFDI 325
+ +E W+RQG K R+++ + R+ ++L +R + + + + R G V ++
Sbjct 269 IEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNE--LFIPPGPRLGDKVLEV 326
Query 326 ENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIE-HTGTVKTGTQL 384
NL SY LLI S + +G +G++G NG GK+TL + I G+ + +GT+ G +
Sbjct 327 SNLRKSYGDRLLIDSLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETV 386
Query 385 EVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRHIYSYLQDFLFSPERARTPVKALS 444
++A DQ R+ ++ K+V VS G D + + +Y+ F F V LS
Sbjct 387 KLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELS 446
Query 445 GGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEMLAEYKGTLLLISHDRAFMDN 504
GGER R+ LAKLL N++++DEPTNDLD+ TL LE L E+ G ++ISHDR F+D
Sbjct 447 GGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDR 506
Query 505 VVTSTWVFDGKGSIEEYVGGYQDY 528
+ T + +G +E + G + +Y
Sbjct 507 IATHILDYQDEGKVEFFEGNFTEY 530
Score = 108 bits (271), Expect = 6e-28
Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 36/251 (14%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQ 67
+ + +++ ++G L+D +F + +G V +IG NG GKSTL ++I G PD G +++
Sbjct 324 LEVSNLRKSYGDRLLIDSLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL- 382
Query 68 NGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDR--MGHL 125
G TV + + D DS + V + +++ +G+ E R +G
Sbjct 383 -GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMK----------IGNTEMPSRAYVGRF 431
Query 126 QHKLDQVDGWALENKVNTILGKMGLDPDADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
K G+D + +LSGG + R+ LA+ L ++LLLDEP
Sbjct 432 NFK--------------------GVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEP 471
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVEL-DRGILRSYEGNYSRY 244
TN LD+E++ LE LLE ++ ISHDR F+DR+AT I++ D G + +EGN++ Y
Sbjct 472 TNDLDIETLRALENALLEFPGCAMV-ISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEY 530
Query 245 LDLKAQQLEAE 255
+ K + L A+
Sbjct 531 EEYKKRTLGAD 541
Score = 90.5 bits (223), Expect = 5e-22
Identities = 67/251 (27%), Positives = 123/251 (49%), Gaps = 41/251 (16%)
Query 337 LIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILG-EIEHTGTVKTGTQLEVAYFDQLRNQ 395
++++ S G +IG++G NG GK+TL++ + G + + G + +++ Y Q Q
Sbjct 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQ-EPQ 79
Query 396 LELEKSVMANVSEG----------------------SDFVDVNGQRRHIYSYLQ-----D 428
L E +V ++ E +DF + ++ + +Q +
Sbjct 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHN 139
Query 429 FLFSPERA----RTP-----VKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLE 479
ERA R P + LSGGER RV L +LLL+ +++++DEPTN LD ++
Sbjct 140 LNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 199
Query 480 LLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFD-GKGSIEEYVGGYQDYLLQRPNQTVV 538
LE L +++GT++ I+HDR F+DNV + W+ + +G + G Y +L Q+ +
Sbjct 200 WLERFLHDFEGTVVAITHDRYFLDNV--AGWILELDRGEGIPWEGNYSSWLEQKDQRLAQ 257
Query 539 DQKSEVKKAQA 549
+ E + ++
Sbjct 258 EASQEAARRKS 268
>P0A9U3 Probable ATP-binding protein YbiT [Escherichia coli (strain
K12)]
Length=530
Score = 266 bits (680), Expect = 2e-84
Identities = 174/533 (33%), Positives = 289/533 (54%), Gaps = 29/533 (5%)
Query 12 DVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLT 71
+V + FG L + + G R LIG NG GKST +K++ G L P G VS+
Sbjct 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65
Query 72 VSMLAQD-VPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACD--RMGHLQHK 128
+ L QD + V D V G E + E L +M D ++ L+ K
Sbjct 66 IGKLRQDQFAFEEFTVLDTVIMGHKE---LWEVKQERDRIYALPEMSEEDGYKVADLEVK 122
Query 129 LDQVDGWALENKVNTILGKMGLDPD---ADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
++DG++ E + +L +G+ + +++++ G K RVLLA+AL PDILLLDEP
Sbjct 123 YGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEP 182
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYL 245
TN+LD+++I WLE+ L E+++ T++ ISHDR F++ + T + +LD G LR Y GNY Y+
Sbjct 183 TNNLDIDTIRWLEQVLNERDS-TMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYM 241
Query 246 DLKAQQLEAEEKQNALFEKKLAEEEAWI-RQGIKARRTRNE-GRVRALKDLR-EESKARR 302
Q E NA + ++AE ++++ R A ++R R R + ++ EE KA
Sbjct 242 TAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASS 301
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
Q + + ++ + ++E L+ +D+ L ++ + ++ G+++ ++G NGVGK+
Sbjct 302 RQNPFIRF--EQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKS 359
Query 363 TLIKAILGEIE-HTGTVKTGTQLEVAYFDQ-----LRNQLELEKSVMANVSEGSDFVDVN 416
TL+K ++G+++ +GTVK + Y+ Q N L + + + EG D
Sbjct 360 TLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDD----- 414
Query 417 GQRRHIYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMV 476
+ + S L LFS + + P K LSGGE+ R+L KL+++ N+++MDEPTN LDM
Sbjct 415 --EQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query 477 TLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYL 529
++E L L Y+GTL+ +SHDR F+ ++ T + I ++ G Y+DYL
Sbjct 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVI-DFSGNYEDYL 524
Score = 118 bits (296), Expect = 3e-31
Identities = 86/236 (36%), Positives = 114/236 (48%), Gaps = 41/236 (17%)
Query 17 FGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLA 76
F L N +LE GE++ ++G NG GKSTLLK + G L PD G V + A
Sbjct 329 FDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYA 388
Query 77 QDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMGHLQHKLDQVDGWA 136
QD Y +D V M Q K + D
Sbjct 389 QD-----------------------HEYEFENDLTVFEWMS--------QWKQEGDD--- 414
Query 137 LENKVNTILGKMGLDPDADLAD----LSGGRKRRVLLARALLTQPDILLLDEPTNHLDVE 192
E V +ILG++ D D+ LSGG K R+L + ++ +P+IL++DEPTNHLD+E
Sbjct 415 -EQAVRSILGRLLFSQD-DIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query 193 SIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLK 248
SIE L LE TL+F+SHDR FV LATRI+E+ + + GNY YL K
Sbjct 473 SIESLN-MALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSK 527
Score = 89.7 bits (221), Expect = 8e-22
Identities = 77/296 (26%), Positives = 135/296 (46%), Gaps = 40/296 (14%)
Query 327 NLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIEHT-GTVKTGTQLE 385
N+++ + S L + S G+R GL+G NG GK+T +K + G++E T G V
Sbjct 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65
Query 386 VAYFDQLRNQLELEKSVMANVSEG-SDFVDVNGQRRHIYSYLQ----------------- 427
+ Q + E E +V+ V G + +V +R IY+ +
Sbjct 66 IGKLRQDQFAFE-EFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYG 124
Query 428 --DFLFSPERART--------------PVKALSGGERNRVLLAKLLLKPSNLIVMDEPTN 471
D + RA P+ ++ G + RVLLA+ L +++++DEPTN
Sbjct 125 EMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTN 184
Query 472 DLDMVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQ 531
+LD+ T+ LE++L E T+++ISHDR F++ V T D G + Y G Y +Y+
Sbjct 185 NLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLD-YGELRVYPGNYDEYMTA 243
Query 532 RPNQTVVDQKSEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQ 587
T ++ A+ KA+ A + + + R+ +I+K++ E+
Sbjct 244 A---TQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEE 296
>P0A9U4 Probable ATP-binding protein YbiT [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=530
Score = 266 bits (680), Expect = 2e-84
Identities = 174/533 (33%), Positives = 289/533 (54%), Gaps = 29/533 (5%)
Query 12 DVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLT 71
+V + FG L + + G R LIG NG GKST +K++ G L P G VS+
Sbjct 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65
Query 72 VSMLAQD-VPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACD--RMGHLQHK 128
+ L QD + V D V G E + E L +M D ++ L+ K
Sbjct 66 IGKLRQDQFAFEEFTVLDTVIMGHKE---LWEVKQERDRIYALPEMSEEDGYKVADLEVK 122
Query 129 LDQVDGWALENKVNTILGKMGLDPD---ADLADLSGGRKRRVLLARALLTQPDILLLDEP 185
++DG++ E + +L +G+ + +++++ G K RVLLA+AL PDILLLDEP
Sbjct 123 YGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEP 182
Query 186 TNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYL 245
TN+LD+++I WLE+ L E+++ T++ ISHDR F++ + T + +LD G LR Y GNY Y+
Sbjct 183 TNNLDIDTIRWLEQVLNERDS-TMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYM 241
Query 246 DLKAQQLEAEEKQNALFEKKLAEEEAWI-RQGIKARRTRNE-GRVRALKDLR-EESKARR 302
Q E NA + ++AE ++++ R A ++R R R + ++ EE KA
Sbjct 242 TAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASS 301
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
Q + + ++ + ++E L+ +D+ L ++ + ++ G+++ ++G NGVGK+
Sbjct 302 RQNPFIRF--EQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKS 359
Query 363 TLIKAILGEIE-HTGTVKTGTQLEVAYFDQ-----LRNQLELEKSVMANVSEGSDFVDVN 416
TL+K ++G+++ +GTVK + Y+ Q N L + + + EG D
Sbjct 360 TLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDD----- 414
Query 417 GQRRHIYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMV 476
+ + S L LFS + + P K LSGGE+ R+L KL+++ N+++MDEPTN LDM
Sbjct 415 --EQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query 477 TLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYL 529
++E L L Y+GTL+ +SHDR F+ ++ T + I ++ G Y+DYL
Sbjct 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVI-DFSGNYEDYL 524
Score = 118 bits (296), Expect = 3e-31
Identities = 86/236 (36%), Positives = 114/236 (48%), Gaps = 41/236 (17%)
Query 17 FGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQNGLTVSMLA 76
F L N +LE GE++ ++G NG GKSTLLK + G L PD G V + A
Sbjct 329 FDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYA 388
Query 77 QDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMGHLQHKLDQVDGWA 136
QD Y +D V M Q K + D
Sbjct 389 QD-----------------------HEYEFENDLTVFEWMS--------QWKQEGDD--- 414
Query 137 LENKVNTILGKMGLDPDADLAD----LSGGRKRRVLLARALLTQPDILLLDEPTNHLDVE 192
E V +ILG++ D D+ LSGG K R+L + ++ +P+IL++DEPTNHLD+E
Sbjct 415 -EQAVRSILGRLLFSQD-DIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query 193 SIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRYLDLK 248
SIE L LE TL+F+SHDR FV LATRI+E+ + + GNY YL K
Sbjct 473 SIESLN-MALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSK 527
Score = 89.7 bits (221), Expect = 8e-22
Identities = 77/296 (26%), Positives = 135/296 (46%), Gaps = 40/296 (14%)
Query 327 NLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKTTLIKAILGEIEHT-GTVKTGTQLE 385
N+++ + S L + S G+R GL+G NG GK+T +K + G++E T G V
Sbjct 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65
Query 386 VAYFDQLRNQLELEKSVMANVSEG-SDFVDVNGQRRHIYSYLQ----------------- 427
+ Q + E E +V+ V G + +V +R IY+ +
Sbjct 66 IGKLRQDQFAFE-EFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYG 124
Query 428 --DFLFSPERART--------------PVKALSGGERNRVLLAKLLLKPSNLIVMDEPTN 471
D + RA P+ ++ G + RVLLA+ L +++++DEPTN
Sbjct 125 EMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTN 184
Query 472 DLDMVTLELLEEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDYLLQ 531
+LD+ T+ LE++L E T+++ISHDR F++ V T D G + Y G Y +Y+
Sbjct 185 NLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLD-YGELRVYPGNYDEYMTA 243
Query 532 RPNQTVVDQKSEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQ 587
T ++ A+ KA+ A + + + R+ +I+K++ E+
Sbjct 244 A---TQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEE 296
>P63389 Probable ATP-binding protein YheS [Escherichia coli (strain
K12)]
Length=637
Score = 259 bits (661), Expect = 1e-80
Identities = 179/644 (28%), Positives = 329/644 (51%), Gaps = 32/644 (5%)
Query 8 ITLRDVQLAFGGPALLDGANFVLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEVSIQ 67
I +Q+ G LLD A + G++V L+G+NG GKSTLL L++ + D G +
Sbjct 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFP 61
Query 68 NGLTVSMLAQDVPMDSGKVADIVADGAGEAAIVLRAYHEASDACVLGDMEACDRMGHLQH 127
++ + Q+ P + V DG E + H+A++ D A + +
Sbjct 62 GSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHDANER---NDGHA---IATIHG 115
Query 128 KLDQVDGWALENKVNTILGKMGLDPDA---DLADLSGGRKRRVLLARALLTQPDILLLDE 184
KLD +D W++ ++ ++L +G + ++D SGG + R+ LA+AL+ + D+LLLDE
Sbjct 116 KLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDE 175
Query 185 PTNHLDVESIEWLEKFLLEQNNLTLLFISHDRSFVDRLATRIVELDRGILRSYEGNYSRY 244
PTNHLD++++ WLEK+L TL+ ISHDR F+D + +I+ +++ + Y GNYS +
Sbjct 176 PTNHLDLDAVIWLEKWLKSYQG-TLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSF 234
Query 245 LDLKAQQLEAEEKQNALFEKKLAEEEAWI-RQGIKARRTRN-EGRVRALKDLREESKARR 302
+A +L ++ ++++A +++I R KA + + + R++ L+ R E A
Sbjct 235 EVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLE--RMELIAPA 292
Query 303 FQQGKVNMGVQDAQRSGKLVFDIENLSVSYDSNLLIRDFSAVVLRGDRIGLVGDNGVGKT 362
+ + + +E +S Y +++ ++ G RIGL+G NG GK+
Sbjct 293 HVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKS 352
Query 363 TLIKAILGEIEH-TGTVKTGTQLEVAYFDQLRNQLELEKSVMANVSEGSDFVDVNGQRRH 421
TLIK + GE+ +G + +++ YF Q +QLE ++ + + + +++
Sbjct 353 TLIKLLAGELAPVSGEIGLAKGIKLGYFAQ--HQLEYLRADESPIQHLARLAPQELEQK- 409
Query 422 IYSYLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELL 481
+ YL F F ++ + SGGE+ R++LA ++ + NL+++DEPTN LD+ + L
Sbjct 410 LRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
Query 482 EEMLAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGSIEEYVGGYQDY------LLQRPNQ 535
E L E++G L+++SHDR + + ++ + +E + G +DY + ++ NQ
Sbjct 470 TEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDR-KVEPFDGDLEDYQQWLSDVQKQENQ 528
Query 536 TVVDQKSEVKKAQAKAEAANTPAPAKKVKLSFKDQRELEQLPVEIEKLEAEQSTLSDELA 595
T K AQA+ + A + + +E+ +L E+EKL A+ + ++L
Sbjct 529 TDEAPKENANSAQARKDQKRREAELRAQTQPLR--KEIARLEKEMEKLNAQLAQAEEKLG 586
Query 596 DGSWFLKDATA-----ATQASQRLAEIEEALLEKLERWDELEQM 634
D + + A Q + + +EE + LE ++LEQM
Sbjct 587 DSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 630
Lambda K H a alpha
0.317 0.135 0.375 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5163504
Database: aef4e0692feae8af7df13dd5b17c246d.SwissProt.fasta
Posted date: May 20, 2024 6:02 AM
Number of letters in database: 9,841
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
