BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: db28f39705630cabf293631681bdb9de.SwissProt.fasta
22 sequences; 16,185 total letters
Query= ACIAD0495
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
Q8CRT9 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidi... 278 1e-86
P56255 ATP-dependent DNA helicase PcrA [Geobacillus stearothermop... 278 2e-86
Q5HN29 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidi... 278 3e-86
Q6G828 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
P64319 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
P64318 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
Q5HEL7 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
Q53727 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
Q6GFF2 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 265 2e-81
P9WMQ0 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculos... 259 6e-79
P0A5A4 ATP-dependent DNA helicase UvrD1 [Mycobacterium bovis (str... 259 6e-79
P9WMQ1 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculos... 259 6e-79
O34580 ATP-dependent DNA helicase PcrA [Bacillus subtilis (strain... 258 7e-79
P44804 ATP-dependent DNA helicase Rep [Haemophilus influenzae (st... 244 3e-74
Q9L6S1 ATP-dependent DNA helicase Rep [Salmonella typhimurium (st... 234 2e-70
Q9CD72 ATP-dependent DNA helicase UvrD1 [Mycobacterium leprae (st... 235 4e-70
P03018 DNA helicase II [Escherichia coli (strain K12)] 233 7e-70
P45612 Probable DNA helicase II homolog [Mycoplasma capricolum su... 233 8e-70
P09980 ATP-dependent DNA helicase Rep [Escherichia coli (strain K... 231 1e-69
Q05311 DNA helicase II [Salmonella typhimurium (strain LT2 / SGSC... 229 2e-68
Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907... 223 5e-66
Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe... 216 5e-63
>Q8CRT9 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
(strain ATCC 12228 / FDA PCI 1200)]
Length=729
Score = 278 bits (712), Expect = 1e-86
Identities = 195/663 (29%), Positives = 338/663 (51%), Gaps = 30/663 (5%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + I +TFT +
Sbjct 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RVE +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAKEMKARVEHLVGEEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALE-HKVQIAELMQSYEQR 197
+L+ ++ ++ + S +N DA EA + H +A + + Y+++
Sbjct 124 VLKSENIDSKRFEPRMFIGAISNLKNELKTPEDAQ----KEANDFHSQMVATVYKGYQRQ 179
Query 198 KQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHV 257
LD+DD++ + PE +++ + + VDE QDTN Q+ +++ L
Sbjct 180 LSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF 239
Query 258 GLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHS 316
CV GD QSIYG+RGAD +NI F+E P A+ + LE+NYRST+ IL+ +N ++ H+
Sbjct 240 KNLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHN 299
Query 317 PIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSA 376
K L G K Q E +EA ++ ++++ + G + E IL R+ +
Sbjct 300 SERKPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRSGKKYSEMAILYRTNAQS 359
Query 377 RYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGD 435
R LE + NIPY +GG K + +KD+LS LRV+ N DDI+ R + + G+G
Sbjct 360 RVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGP 419
Query 436 VGASKLAHELIQ----LPDIDARCERLERHDKVDPKAILILKQL-DVLQQHVEASIGLAL 490
K+ +Q + D A + + KV + I + + +++++ I +
Sbjct 420 SSVEKIQTYALQNNISMFDALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIV 479
Query 491 DALAEQ--------LEQNYKTQDWSRRVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSIS 541
D + ++ EQ+ +++ + +F V + ++ L E L ++ + ++
Sbjct 480 DEVLQKSGYRDMLDREQSIESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVA 539
Query 542 EIERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYV 599
+I+ + Q+ VT++T+HSAKG E + ++ + + +PH RA D E+EEERR+ YV
Sbjct 540 DIDEADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMEEERRICYV 599
Query 600 ALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAHIHQTVPRFPQKTQ 659
A+TRAE L IT N + + + S FL ++P+ L+D+H Q K+Q
Sbjct 600 AITRAEELLYIT----NATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQTISPKSQ 655
Query 660 VRQ 662
++
Sbjct 656 PKR 658
>P56255 ATP-dependent DNA helicase PcrA [Geobacillus stearothermophilus]
Length=724
Score = 278 bits (710), Expect = 2e-86
Identities = 196/650 (30%), Positives = 340/650 (52%), Gaps = 33/650 (5%)
Query 20 EQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHRGTPAD-QIQILTFT 78
EQL+ LN +Q A T L++AGAG GKT+ + R A+L+ A I +TFT
Sbjct 6 EQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
Query 79 RRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMF 137
+AA E+ RV+ LG A+ + STFH+ C+ +LRR+ G+ + F+I+D DQ+ +
Sbjct 66 NKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVM 125
Query 138 RLLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQR 197
+ + K+KN + PK + + +++L + ++ ++++ Q Y+QR
Sbjct 126 KTIL-KEKN-IDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQR 183
Query 198 KQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHV 257
H LD+DD++ P+++ + + + +DE QDTN Q+ +++ L E
Sbjct 184 LLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF 243
Query 258 GLFC-VGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHS 316
C VGD QSIY +RGAD +NI F+ PNA+V+ LE+NYRST+ IL +N ++ H+
Sbjct 244 QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHN 303
Query 317 PIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAH-WHEHMILVRSGFS 375
K++ +G NE +EA ++A + ++G + + +L R+
Sbjct 304 VNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 363
Query 376 ARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVG 434
+R +E L+ NIPY+ +GG+K + +KD+L+ LRV+ NP DD++ +R + + G+G
Sbjct 364 SRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIG 423
Query 435 DVGASKLA-----HELIQLPDIDARCERLERHDKVDPKAILILKQLDV---LQQHVEAS- 485
KL HEL L + E + K QL+ LQ++V +
Sbjct 424 ASTIDKLVRYAADHEL-SLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTE 482
Query 486 -IGLALDALA-EQLEQNYKTQDWSRRVKDFDLVKQLGR--KHVALSEFLEEYVLEPVSIS 541
+ LD ++ + +T + R+++ D + + ++V+ + L ++ + IS
Sbjct 483 LVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS 542
Query 542 EI------ERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERR 595
++ E++ + D V ++T+H+AKG E V ++ + +PH R+ D DE+EEERR
Sbjct 543 DLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERR 602
Query 596 VLYVALTRAENELIITKQNYNT-WAQDQYDEQGRKIESYFLNDLPQHLVD 644
+ YV +TRAE EL++T T + Q D R FLN++P HL++
Sbjct 603 LAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSR-----FLNEIPAHLLE 647
>Q5HN29 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
(strain ATCC 35984 / RP62A)]
Length=729
Score = 278 bits (710), Expect = 3e-86
Identities = 195/663 (29%), Positives = 338/663 (51%), Gaps = 30/663 (5%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + I +TFT +
Sbjct 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RVE +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAKEMKARVEHLVGEEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALE-HKVQIAELMQSYEQR 197
+L+ ++ ++ + S +N DA EA + H +A + + Y+++
Sbjct 124 VLKSENIDSKRFEPRMFIGAISNLKNELKTPEDAQ----KEANDFHSQMVATVYKGYQRQ 179
Query 198 KQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHV 257
LD+DD++ + PE +++ + + VDE QDTN Q+ +++ L
Sbjct 180 LSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF 239
Query 258 GLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHS 316
CV GD QSIYG+RGAD +NI F+E P A+ + LE+NYRST+ IL+ +N ++ H+
Sbjct 240 KNLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHN 299
Query 317 PIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSA 376
K L G K Q E +EA ++ ++++ + G + E IL R+ +
Sbjct 300 SERKPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRSGKKYSEMAILYRTNAQS 359
Query 377 RYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGD 435
R LE + NIPY +GG K + +KD+LS LRV+ N DDI+ R + + G+G
Sbjct 360 RVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGP 419
Query 436 VGASKLAHELIQ----LPDIDARCERLERHDKVDPKAILILKQL-DVLQQHVEASIGLAL 490
K+ +Q + D A + + KV + I + + +++++ I +
Sbjct 420 SSVEKIQTYALQNNISMFDALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIV 479
Query 491 DALAEQ--------LEQNYKTQDWSRRVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSIS 541
D + ++ EQ+ +++ + +F V + ++ L E L ++ + ++
Sbjct 480 DEVLQKSGYRDMLDREQSIESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVA 539
Query 542 EIERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYV 599
+I+ + Q+ VT++T+HSAKG E + ++ + + +PH RA D E+EEERR+ YV
Sbjct 540 DIDEADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMEEERRICYV 599
Query 600 ALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAHIHQTVPRFPQKTQ 659
A+TRAE L IT N + + + S FL ++P+ L+D+H Q K+Q
Sbjct 600 AITRAEELLYIT----NATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQTIYPKSQ 655
Query 660 VRQ 662
++
Sbjct 656 PKR 658
>Q6G828 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain MSSA476)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 183/646 (28%), Positives = 327/646 (51%), Gaps = 28/646 (4%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYVA 600
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA D E++EERR+ YVA
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVA 600
Query 601 LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 601 ITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>P64319 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain N315)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 183/646 (28%), Positives = 327/646 (51%), Gaps = 28/646 (4%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYVA 600
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA D E++EERR+ YVA
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVA 600
Query 601 LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 601 ITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>P64318 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain Mu50 / ATCC 700699)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 183/646 (28%), Positives = 327/646 (51%), Gaps = 28/646 (4%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYVA 600
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA D E++EERR+ YVA
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVA 600
Query 601 LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 601 ITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>Q5HEL7 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain COL)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 183/646 (28%), Positives = 327/646 (51%), Gaps = 28/646 (4%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYVA 600
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA D E++EERR+ YVA
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVA 600
Query 601 LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 601 ITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>Q53727 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 183/646 (28%), Positives = 327/646 (51%), Gaps = 28/646 (4%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA--QGDFDEVEEERRVLYVA 600
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA D E++EERR+ YVA
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVA 600
Query 601 LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 601 ITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>Q6GFF2 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain MRSA252)]
Length=730
Score = 265 bits (676), Expect = 2e-81
Identities = 184/647 (28%), Positives = 329/647 (51%), Gaps = 30/647 (5%)
Query 22 LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLI-HRGTPADQIQILTFTRR 80
L+ +N +Q A T L++AGAG GKT+ + R A+L+ + + +TFT +
Sbjct 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query 81 AASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR- 138
AA E+ RV++ +G A+ + STFH+ C+ +LRR+ G+ + FTIID DQ + +
Sbjct 64 AAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD 123
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+L+ ++ ++ + S +N +DA Q H +A + Y+++
Sbjct 124 VLKNENIDSKKFEPRMFIGAISNLKNELKTPADA---QKEATDYHSQMVATVYSGYQRQL 180
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
LD+DD++ + PE++++ + + VDE QDTN Q+ +++ L
Sbjct 181 SRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK 240
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIYG+RGAD +NI F++ P A + LE+NYRST+ IL+ +N ++ ++
Sbjct 241 NLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNS 300
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILVRSGFSAR 377
K L G K E +EA ++ ++++ + G + + IL R+ +R
Sbjct 301 ERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSR 360
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGDV 436
LE + N+PY +GG K + +KD+LS LR++ N DDI+ R + + GVG
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 437 GASKLAHELIQ----LPDIDARCERLERHDKVDPKAI-------LILKQLDVLQQHVEAS 485
K+ + +Q + D + + KV + + ++K+ + L+ H
Sbjct 421 SVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVD 480
Query 486 IGLALDALAEQLEQNYKTQDWSR--RVKDFDLVKQLGRKHVALSE-FLEEYVLEPVSISE 542
L E LE+ + SR + +F V + ++ L E L ++ + +++
Sbjct 481 EVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAD 540
Query 543 IERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARA---QGDFDEVEEERRVLYV 599
I+ + ++ VT++T+HSAKG E + ++ + + +PH RA +GD E++EERR+ YV
Sbjct 541 IDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEGD-HEMQEERRICYV 599
Query 600 ALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAH 646
A+TRAE L IT + ++ + + S FL ++P+ L++ H
Sbjct 600 AITRAEEVLYIT----HATSRMLFGRPQSNMPSRFLKEIPESLLENH 642
>P9WMQ0 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=771
Score = 259 bits (661), Expect = 6e-79
Identities = 207/684 (30%), Positives = 335/684 (49%), Gaps = 78/684 (11%)
Query 20 EQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQILTFT 78
+QL+ LNPQQ +A + L++AGAG GKT + R A+L+ RG QI +TFT
Sbjct 17 DQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76
Query 79 RRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAF-GLGQ-FTIIDRDDQMLM 136
+AA+E+ RV +G A+ + STFH+ C+ +LR GL F+I D DD +
Sbjct 77 NKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRL 136
Query 137 FRLLR---GKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQS 193
+++ G D P+ L + S +N AL ++ + +A +
Sbjct 137 LQMVGRDLGLDIKRYSPRL--LANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDE 194
Query 194 YEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPL 253
Y++R + + LD+DD++ LQ P++ Q+ R + +LVDE QDTN Q+ +++ L
Sbjct 195 YQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVREL 254
Query 254 IEH-------VGLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEI 305
+ G CV GD QSIY FRGA NI F+ P+ + LE+NYRSTQ I
Sbjct 255 VGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNI 314
Query 306 LDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQ-QGAHWH 364
L +N ++A + K+L G G + NE +EA ++A+++ A + ++
Sbjct 315 LSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYN 374
Query 365 EHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWM 424
+ + R+ S+R LE LI IPY+ +GGV+ E ++D+++ LRV+ NP D ++
Sbjct 375 DVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLR 434
Query 425 RFL-TLWNGVGD----------------VGASKLAHELIQLPDIDARCERLERHDKVDPK 467
R L T G+GD G + +A ++P ++ R E K
Sbjct 435 RILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE----------K 484
Query 468 AIL-ILKQLDVLQQHVEASIGLALDALAE------QLEQNYKTQDWSRRVKDFDLVK--- 517
AI ++ D L+ ++ +G ++A+ E +LE + Q+ +R +LV
Sbjct 485 AIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAH 544
Query 518 --QLGRKHVA--------------LSEFLEEYVLEPVSISEIERSGDQDLVTIITIHSAK 561
R++ A L++FLE L EI G +VT++T+H+AK
Sbjct 545 EFSTDRENAAALGPDDEDVPDTGVLADFLERVSL-VADADEIPEHG-AGVVTLMTLHTAK 602
Query 562 GAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIITKQNY-NTWAQ 620
G E V +V +PH RA + E+ EERR+ YV +TRA L +++ ++W Q
Sbjct 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQ 662
Query 621 DQYDEQGRKIESYFLNDLPQHLVD 644
+ ES FL ++PQ L+D
Sbjct 663 PMLNP-----ESRFLREIPQELID 681
>P0A5A4 ATP-dependent DNA helicase UvrD1 [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=771
Score = 259 bits (661), Expect = 6e-79
Identities = 207/684 (30%), Positives = 335/684 (49%), Gaps = 78/684 (11%)
Query 20 EQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQILTFT 78
+QL+ LNPQQ +A + L++AGAG GKT + R A+L+ RG QI +TFT
Sbjct 17 DQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76
Query 79 RRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAF-GLGQ-FTIIDRDDQMLM 136
+AA+E+ RV +G A+ + STFH+ C+ +LR GL F+I D DD +
Sbjct 77 NKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRL 136
Query 137 FRLLR---GKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQS 193
+++ G D P+ L + S +N AL ++ + +A +
Sbjct 137 LQMVGRDLGLDIKRYSPRL--LANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDE 194
Query 194 YEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPL 253
Y++R + + LD+DD++ LQ P++ Q+ R + +LVDE QDTN Q+ +++ L
Sbjct 195 YQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVREL 254
Query 254 IEH-------VGLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEI 305
+ G CV GD QSIY FRGA NI F+ P+ + LE+NYRSTQ I
Sbjct 255 VGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNI 314
Query 306 LDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQ-QGAHWH 364
L +N ++A + K+L G G + NE +EA ++A+++ A + ++
Sbjct 315 LSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYN 374
Query 365 EHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWM 424
+ + R+ S+R LE LI IPY+ +GGV+ E ++D+++ LRV+ NP D ++
Sbjct 375 DVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLR 434
Query 425 RFL-TLWNGVGD----------------VGASKLAHELIQLPDIDARCERLERHDKVDPK 467
R L T G+GD G + +A ++P ++ R E K
Sbjct 435 RILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE----------K 484
Query 468 AIL-ILKQLDVLQQHVEASIGLALDALAE------QLEQNYKTQDWSRRVKDFDLVK--- 517
AI ++ D L+ ++ +G ++A+ E +LE + Q+ +R +LV
Sbjct 485 AIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAH 544
Query 518 --QLGRKHVA--------------LSEFLEEYVLEPVSISEIERSGDQDLVTIITIHSAK 561
R++ A L++FLE L EI G +VT++T+H+AK
Sbjct 545 EFSTDRENAAALGPDDEDVPDTGVLADFLERVSL-VADADEIPEHG-AGVVTLMTLHTAK 602
Query 562 GAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIITKQNY-NTWAQ 620
G E V +V +PH RA + E+ EERR+ YV +TRA L +++ ++W Q
Sbjct 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQ 662
Query 621 DQYDEQGRKIESYFLNDLPQHLVD 644
+ ES FL ++PQ L+D
Sbjct 663 PMLNP-----ESRFLREIPQELID 681
>P9WMQ1 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=771
Score = 259 bits (661), Expect = 6e-79
Identities = 207/684 (30%), Positives = 335/684 (49%), Gaps = 78/684 (11%)
Query 20 EQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQILTFT 78
+QL+ LNPQQ +A + L++AGAG GKT + R A+L+ RG QI +TFT
Sbjct 17 DQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76
Query 79 RRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAF-GLGQ-FTIIDRDDQMLM 136
+AA+E+ RV +G A+ + STFH+ C+ +LR GL F+I D DD +
Sbjct 77 NKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRL 136
Query 137 FRLLR---GKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQS 193
+++ G D P+ L + S +N AL ++ + +A +
Sbjct 137 LQMVGRDLGLDIKRYSPRL--LANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDE 194
Query 194 YEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPL 253
Y++R + + LD+DD++ LQ P++ Q+ R + +LVDE QDTN Q+ +++ L
Sbjct 195 YQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVREL 254
Query 254 IEH-------VGLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEI 305
+ G CV GD QSIY FRGA NI F+ P+ + LE+NYRSTQ I
Sbjct 255 VGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNI 314
Query 306 LDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQ-QGAHWH 364
L +N ++A + K+L G G + NE +EA ++A+++ A + ++
Sbjct 315 LSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYN 374
Query 365 EHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWM 424
+ + R+ S+R LE LI IPY+ +GGV+ E ++D+++ LRV+ NP D ++
Sbjct 375 DVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLR 434
Query 425 RFL-TLWNGVGD----------------VGASKLAHELIQLPDIDARCERLERHDKVDPK 467
R L T G+GD G + +A ++P ++ R E K
Sbjct 435 RILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE----------K 484
Query 468 AIL-ILKQLDVLQQHVEASIGLALDALAE------QLEQNYKTQDWSRRVKDFDLVK--- 517
AI ++ D L+ ++ +G ++A+ E +LE + Q+ +R +LV
Sbjct 485 AIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAH 544
Query 518 --QLGRKHVA--------------LSEFLEEYVLEPVSISEIERSGDQDLVTIITIHSAK 561
R++ A L++FLE L EI G +VT++T+H+AK
Sbjct 545 EFSTDRENAAALGPDDEDVPDTGVLADFLERVSL-VADADEIPEHG-AGVVTLMTLHTAK 602
Query 562 GAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIITKQNY-NTWAQ 620
G E V +V +PH RA + E+ EERR+ YV +TRA L +++ ++W Q
Sbjct 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQ 662
Query 621 DQYDEQGRKIESYFLNDLPQHLVD 644
+ ES FL ++PQ L+D
Sbjct 663 PMLNP-----ESRFLREIPQELID 681
>O34580 ATP-dependent DNA helicase PcrA [Bacillus subtilis (strain
168)]
Length=739
Score = 258 bits (659), Expect = 7e-79
Identities = 188/651 (29%), Positives = 324/651 (50%), Gaps = 36/651 (6%)
Query 21 QLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHRGTPAD-QIQILTFTR 79
QL+ LNP Q A T L++AGAG GKT+ + R A+L+ A I +TFT
Sbjct 7 QLLSGLNPVQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66
Query 80 RAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQMLMFR 138
+AA E+ RVE LG A + STFH+ C+ +LRR+ G+ + F+I+D DQ+ + +
Sbjct 67 KAAREMKERVESILGPGADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIK 126
Query 139 LLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRK 198
+ + N+ PK + + +++L++ + ++++ Y+++
Sbjct 127 GIL--KERNLDPKKFDPRSILGTISSAKNELTEPEEFSKVAGGYYDQVVSDVYADYQKKL 184
Query 199 QERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVG 258
+ LD+DD++ PE++++ R + + VDE QDTN Q+ +++ L E
Sbjct 185 LKNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKQLAERFQ 244
Query 259 LFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSP 317
CV GD QSIY +RGAD NI F++ PNA V+ LE+NYRST+ IL +N ++ ++
Sbjct 245 NLCVVGDSDQSIYRWRGADITNILSFEKDYPNASVILLEQNYRSTKRILRAANEVIKNNS 304
Query 318 IEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAH-WHEHMILVRSGFSA 376
K L +G+K NEF E ++A + H G + IL R+ +
Sbjct 305 NRKPKNLWTENDEGIKISYYRGDNEFGEGQFVAGKIHQLHSTGKRKLSDIAILYRTNAQS 364
Query 377 RYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTL-WNGVGD 435
R +E L+ + Y +GG K + +KD+L+ LR+V NP DDI++ R + + GVG
Sbjct 365 RVIEETLLKAGLNYNIVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGA 424
Query 436 VGASKLAHELIQLPDIDARCERLERHDKVDPKAILILKQLDVLQQHVEASIG----LALD 491
K+A + + + + +++ D + A LD +Q +E L++
Sbjct 425 TSLEKIA-SYAAINGL-SFFQAIQQVDFIGVSA-KAANALDSFRQMIENLTNMQDYLSIT 481
Query 492 ALAEQLEQNYKTQDWSRRVKDFDLVKQLGRKHVALS-----------EFLEEYVLEPVSI 540
L E++ + ++ + K + +L LS + L ++ + I
Sbjct 482 ELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKNFEQKSEDKTLVAFLTDLALI 541
Query 541 SEI-------ERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEE 593
++I E SG +D +T++T+H+AKG E V ++ + +PH+R+ + E+EEE
Sbjct 542 ADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE 601
Query 594 RRVLYVALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVD 644
RR+ YV +TRAE EL +T T + ES F+ ++P L++
Sbjct 602 RRLAYVGITRAEQELYLTNAKMRT----LFGRTNMNPESRFIAEIPDDLLE 648
>P44804 ATP-dependent DNA helicase Rep [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=670
Score = 244 bits (622), Expect = 3e-74
Identities = 202/646 (31%), Positives = 314/646 (49%), Gaps = 43/646 (7%)
Query 25 ELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHR-GTPADQIQILTFTRRAAS 83
+LNPQQ +A CLVLAGAG GKT+ II + AHLI + G QI +TFT +AA
Sbjct 2 KLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAR 61
Query 84 EIVTRVEQHLGAP-AKGLRASTFHTFCMYLLRRNPQAFGL-GQFTIIDRDDQMLMFRLLR 141
E+ RV +G +KGL STFHT +L+R +A G T+ D DQ + + L
Sbjct 62 EMKERVAHSIGKEQSKGLLVSTFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELT 121
Query 142 GKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQ-IAELMQSYEQRKQE 200
+L V S +N A A + K Q A+ + Y + +
Sbjct 122 ADVLKEDKDLLRELISVISNWKNDLISPKQAFAL----ARDAKYQTFAKCYERYATQIRT 177
Query 201 RHFLDYDDILAIVAVNLQNSPEL-VQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVGL 259
+ LD+DD++ + + + + E+ +W + + +LVDE QDTN Q+ +++ L+
Sbjct 178 YNALDFDDLIMLPTLLFKQNEEVRSKWQAKI-RYLLVDEYQDTNTSQYELIKLLVGDRAC 236
Query 260 FCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSPI 318
F V GDD QSIY +RGA EN+ ++ P V+ LE+NYRSTQ IL +N L+ ++
Sbjct 237 FTVVGDDDQSIYSWRGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHCANILIDNNEH 296
Query 319 EYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLA-RHQQGAHWHEHMILVRSGFSAR 377
+ K+L + G+G K + +NE EA I +L+A R + + ++ IL R +R
Sbjct 297 VFDKKLFSTIGKGEKLLVIEAKNEEHEAERIVAELIAHRFSRKTKYKDYAILYRGNHQSR 356
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TLWNGVGDV 436
LE L+ IPY+ GG A +KD+++ LR+V+N DD A++R + T +G
Sbjct 357 LLEKVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGTA 416
Query 437 GASKLAHELIQLPDID--ARCERLERHDKVDPKAILILKQL---------DVLQQHVEAS 485
KL EL Q I E ++ PKA L++ ++ + E +
Sbjct 417 TLQKLG-ELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDEIQRSEPERA 475
Query 486 IGLALDAL-AEQLEQNYKTQDWSRRVKD------FDLVKQL-----GRKHVALSEFLEEY 533
+ L A+ E+ Y T + ++ FD V + + + L++ +
Sbjct 476 VRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPMNLNQVVTRL 535
Query 534 VLEPVSISEIERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEE 593
L + + E D D V ++T+H++KG E Y+ + PH + D D VEEE
Sbjct 536 TLRDM-LERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPH-QTSIDEDNVEEE 593
Query 594 RRVLYVALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLP 639
RR+ YV +TRA+ EL + + QY E R S FL +LP
Sbjct 594 RRLAYVGITRAQKELTFSLCR----ERRQYGELVRPEPSRFLAELP 635
>Q9L6S1 ATP-dependent DNA helicase Rep [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=674
Score = 234 bits (596), Expect = 2e-70
Identities = 193/641 (30%), Positives = 308/641 (48%), Gaps = 34/641 (5%)
Query 26 LNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHR-GTPADQIQILTFTRRAASE 84
LNP Q A CLVLAGAG GKT+ I + AHLI G A I +TFT +AA E
Sbjct 3 LNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62
Query 85 IVTRVEQHLGAP-AKGLRASTFHTFCMYLLRRNPQAFGL-GQFTIIDRDDQMLMFRLLRG 142
+ RV Q LG A+GL STFHT + +++R A G+ F++ D DQ+ LL+
Sbjct 63 MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVA---LLKE 119
Query 143 KDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRKQERH 202
+ + L + S N ++ L E A Y+ + +
Sbjct 120 LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERDRIFAHCYGLYDAHMKACN 179
Query 203 FLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVGLFCV 262
LD+DD++ + + LQ + E+ + + +LVDE QDTN Q+ +++ L+ F V
Sbjct 180 VLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFTV 239
Query 263 -GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSPIEYH 321
GDD QSIY +RGA +N+ + P +V+ LE+NYRS+ IL +N L+A++P +
Sbjct 240 VGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFE 299
Query 322 KQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARH-QQGAHWHEHMILVRSGFSARYLE 380
K+L + G G + ++ NE EA + +L+A H + ++ IL R +R E
Sbjct 300 KRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFE 359
Query 381 GALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TLWNGVGDVGAS 439
L+ IPY+ GG +KD+L+ LRV+ NP DD A++R + T +G
Sbjct 360 KFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLQ 419
Query 440 KLAH-ELIQLPDIDARCERLERHDKVDPKAILILKQ----LDVLQQHVEASIGLALDALA 494
KL + + + + K+ + L + L +Q+ E A+ L
Sbjct 420 KLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLAEREPVAAVRDLI 479
Query 495 EQLEQNYKTQDWSRRVKDFDL-VKQLGRKHVALSEFLEEYVL-EPVSISEI--------- 543
++ + S K ++ +K + + ++E LE L EP++++++
Sbjct 480 HGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLRDM 539
Query 544 ----ERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYV 599
E + D V ++T+H++KG E Y+ + PH ++ D D +EEERR+ YV
Sbjct 540 MERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPH-QSSIDEDNIEEERRLAYV 598
Query 600 ALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQ 640
+TRA+ EL T + QY E R S FL +LPQ
Sbjct 599 GITRAQKELTFTLCK----ERRQYGELVRPEPSRFLLELPQ 635
>Q9CD72 ATP-dependent DNA helicase UvrD1 [Mycobacterium leprae
(strain TN)]
Length=778
Score = 235 bits (599), Expect = 4e-70
Identities = 199/683 (29%), Positives = 323/683 (47%), Gaps = 67/683 (10%)
Query 20 EQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQILTFT 78
++L+ LNPQQ +A + L++AGAG GKT + R A+LI R QI +TFT
Sbjct 15 DRLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTTVLARRIAYLIAARSVGVSQILAITFT 74
Query 79 RRAASEIVTRVEQHLGA-PAKGLRASTFHTFCMYLLRRNPQAFG--LGQFTIIDRDDQML 135
+AA+E+ RV + +G + STFH+ C+ +LR G F+I D DD
Sbjct 75 NKAAAEMRERVARLVGDHTGPSMWVSTFHSTCVRILRNQASLIGGLNSNFSIYDVDDSRS 134
Query 136 MFRLL---RGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQ 192
+ +++ G D P+ + + S +N A+ + + +A +
Sbjct 135 LLQMIGQDMGLDIKRYSPRL--MANAISNLKNELIDAESAVANLSSDTDDLARTVATVYG 192
Query 193 SYEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQP 252
Y++R + + LD+DD++ LQ P++ + R + +LVDE QDTN Q+ +++
Sbjct 193 EYQRRLRTANALDFDDLIGETVGILQAFPQIAEHYRRRFRHVLVDEYQDTNHAQYVLVRE 252
Query 253 LIEH----------VGLFCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRS 301
L+ H G CV GD QSIY FRG+ NI F+ P+ + LE+NYRS
Sbjct 253 LVGHGARNSPDDMPPGELCVVGDADQSIYAFRGSTISNIEDFERDYPDTTTILLEQNYRS 312
Query 302 TQEILDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGA 361
TQ IL +N ++A + K+L G+G + NE +EA +IA ++ A G
Sbjct 313 TQNILSAANSVIARNFGRRDKRLWTDAGKGELIVGYVSDNEHDEAKFIADEIDALVGGGE 372
Query 362 HWHEHM-ILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDD 420
++ + +L R+ +R LE I IPY+ +GG ES ++D+++ LRV+ NP D
Sbjct 373 ITYDDVAVLYRANNLSRSLEEVFIPTGIPYKVVGGFCFYESKEIRDLIAYLRVLDNPGDA 432
Query 421 IAWMRFL-TLWNGVGDVGASKLAHELIQLPDIDARCERLERHDKV------DPKAIL-IL 472
++ R L T G+GD + ++ A + KV KAI +
Sbjct 433 VSMRRILNTPRRGIGDRAEACVSVYAENTGTSFADALQAVAEGKVPMLNTRSVKAIAGFV 492
Query 473 KQLDVLQQHVEASIGLALDALAE------QLEQNYKTQDWSR-----------------R 509
LD L+ V+ +G ++++ E +LE + Q+ +R +
Sbjct 493 ALLDDLRCRVDDDLGELVESVLERSGYLRELESSTDPQELARLDNLNELVSFAHEFSTEQ 552
Query 510 VKDFDLVKQLGRKH-------VALSEFLEEYVLEPVSISEIERSGDQDLVTIITIHSAKG 562
L K L AL+ FLE+ L +S ++ + +VT++T+H+AKG
Sbjct 553 ANAAALAKSLHTPEDEDVPDTGALAAFLEKVSL--MSDTDQIPENNSGVVTLMTLHAAKG 610
Query 563 AEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIITKQ-NYNTWAQD 621
E V +V PH R GD E+ EERR+ YV +TRA L +++ ++W Q
Sbjct 611 LEFPVVFVTGWEDGMLPHMRTLGDPTELSEERRLAYVGITRARQRLYLSRAITRSSWGQP 670
Query 622 QYDEQGRKIESYFLNDLPQHLVD 644
+ ES FL ++P L+D
Sbjct 671 ILNP-----ESRFLREIPPELID 688
>P03018 DNA helicase II [Escherichia coli (strain K12)]
Length=720
Score = 233 bits (594), Expect = 7e-70
Identities = 196/673 (29%), Positives = 305/673 (45%), Gaps = 57/673 (8%)
Query 17 MSFEQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQIL 75
M L+ LN +Q A + LVLAGAG GKT+ ++ R A L+ I +
Sbjct 1 MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV 60
Query 76 TFTRRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQM 134
TFT +AA+E+ R+ Q +G G+ TFH LLR + L Q F I+D +DQ+
Sbjct 61 TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL 120
Query 135 -LMFRLLRGK--DKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELM 191
L+ RL++ D+ P+ A ++ L I+ +E Q ++
Sbjct 121 RLLKRLIKAMNLDEKQWPPRQA----MWYINSQKDEGLRPHHIQSYGNPVEQTWQ--KVY 174
Query 192 QSYEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQ 251
Q+Y++ +D+ ++L N P ++Q +LVDE QDTN +Q+ ++
Sbjct 175 QAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIR 234
Query 252 PLIEHVG-LFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISN 310
L G + VGDD QSIYG+RGA ENI F P AE + LE+NYRST IL +N
Sbjct 235 LLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAAN 294
Query 311 WLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILV 370
L+ ++ K+L G L NE +EA ++ + G E IL
Sbjct 295 ALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILY 354
Query 371 RSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TL 429
RS +R LE AL+ ++PYR GG++ E +KD LS LR++ N DD A+ R + T
Sbjct 355 RSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTP 414
Query 430 WNGVGDVGASKLAHELIQLPDIDARCERLERHDKVDPKAILILKQLDVLQQHVEASIGLA 489
G+GD ++++ D + + ++ + L + LQ+ +E
Sbjct 415 TRGIGD-----RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFME-----L 464
Query 490 LDALAEQLEQNYKTQDWSRRVKDFDL----VKQLGRKHVALSEFLEEYVLEPVSISEIER 545
+DALA++ R +KD L ++ G K E LEE V S E
Sbjct 465 IDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEE 524
Query 546 SGD-----------------------QDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHAR 582
D QD V ++T+HSAKG E ++ + +P
Sbjct 525 DEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQM 584
Query 583 AQGDFDEVEEERRVLYVALTRAENELIIT-KQNYNTWAQDQYDEQGRKIESYFLNDLPQH 641
+ + +EEERR+ YV +TRA +L +T + + ++ Y R F+ +LP+
Sbjct 585 SLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR-----FIGELPEE 639
Query 642 LV-DAHIHQTVPR 653
V + + TV R
Sbjct 640 CVEEVRLRATVSR 652
>P45612 Probable DNA helicase II homolog [Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 / NCTC
10154)]
Length=722
Score = 233 bits (594), Expect = 8e-70
Identities = 190/662 (29%), Positives = 329/662 (50%), Gaps = 50/662 (8%)
Query 17 MSFEQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHR-GTPADQIQIL 75
MS + L+ LN QQ A + ++AGAG GKT+ I + A+LI + +I +
Sbjct 1 MSVDNLLDLLNDQQLAAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAV 60
Query 76 TFTRRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGL-GQFTIIDRDDQM 134
TFT +AA E+ RV Q K STFH++C +LR + + GL +F IID DDQ
Sbjct 61 TFTNKAAKEMKERVLQITNNSFKSPFISTFHSWCSKVLRIDGKHIGLEDKFLIIDSDDQK 120
Query 135 LMFRLLRGKDKNNVLPKAAQLCD--VYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQ 192
+ + + + + D + + + +L D L + A + +
Sbjct 121 RIIKSALKESNIELSENDKKTFDKKILYKIKEWKEELVDPSEAILNATSTLEKNFAVIYR 180
Query 193 SYEQRKQERHFLDYDDI-LAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQ 251
Y+ + + LD+DD+ + + + QN+ L +W + V LVDE QDTN LQ+ +++
Sbjct 181 LYQNTLLKNNSLDFDDLQIYVYRLFKQNNEILNKWRNAYDYV-LVDEFQDTNELQFSLIK 239
Query 252 PLIEHVG-LFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISN 310
L + L VGD Q+IY +RGA + I +F + NA + L +NYRST++ILDISN
Sbjct 240 FLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRSTKQILDISN 299
Query 311 WLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILV 370
+ ++ HK++ + G K L ++ EA++++ + +QG H+ + IL
Sbjct 300 SFIKNNKFREHKEIFTNNKSGKKVVLKECNSKTSEASYVSSKIKELVKQGYHYKDIFILY 359
Query 371 RSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFLTLW 430
R ++ E L + IP++ IGG+K E +KD ++ L+ +I+ +D+++ R L L
Sbjct 360 RMNAWSQEFEKELANKKIPFQLIGGIKFRERKVIKDAMAFLK-MISIKDNLSSQRVLGLI 418
Query 431 NGVGDVGASKLAHELIQLPDIDARCERLERHDKV--DPKAIL--ILKQLDVLQQHVEASI 486
+G++ K+ + A L D + + K +L I K LD L + + +
Sbjct 419 PKIGNITIEKIIN--------TANLNHLNIFDLITNEDKTLLHSITKNLDELIEVFKTAH 470
Query 487 GLALDALAEQ-------LEQNYKTQDWSRRVKD--------FDLVKQLGR----KHVALS 527
L LD + ++ Y+ + R+ +D +D +K+ K+ +
Sbjct 471 QLYLDNTNIEEILKYLLIQSGYENKLKIRKEQDDLENINALYDQLKRFDEDFDPKYYSEE 530
Query 528 EFLEEYVLEPVSISEIERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDF 587
L ++ E S+I+ + D V+++T+H+AKG E KV ++ ++ +P ++
Sbjct 531 NKLIAFLQEEALTSDIDEAEQIDKVSLLTVHAAKGLENKVVFITGLNQGIFPSRISETSI 590
Query 588 DEVEEERRVLYVALTRAENELIIT--KQNYNTWAQD---------QYDEQGRKIESYFLN 636
+E+EEERR LYVALTRA++EL +T K +Y+ Q + D+ + E+ FLN
Sbjct 591 NELEEERRALYVALTRAKDELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEFETQFLN 650
Query 637 DL 638
L
Sbjct 651 TL 652
>P09980 ATP-dependent DNA helicase Rep [Escherichia coli (strain
K12)]
Length=673
Score = 231 bits (590), Expect = 1e-69
Identities = 190/644 (30%), Positives = 312/644 (48%), Gaps = 40/644 (6%)
Query 26 LNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHR-GTPADQIQILTFTRRAASE 84
LNP Q +A CLVLAGAG GKT+ I + AHLI G A I +TFT +AA E
Sbjct 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62
Query 85 IVTRVEQHLGAP-AKGLRASTFHTFCMYLLRRNPQAFGL-GQFTIIDRDDQMLMFRLLRG 142
+ RV Q LG A+GL STFHT + +++R A G+ F++ D DQ+ + + L
Sbjct 63 MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE 122
Query 143 ---KDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRKQ 199
+D +L + + T S+ + + I + H + Y+ +
Sbjct 123 GLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGL------YDAHLK 176
Query 200 ERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQPLIEHVGL 259
+ LD+DD++ + + LQ + E+ + + +LVDE QDTN Q+ +++ L+
Sbjct 177 ACNVLDFDDLILLPTLLLQRNEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRAR 236
Query 260 FCV-GDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISNWLLAHSPI 318
F V GDD QSIY +RGA +N+ + P +V+ LE+NYRS+ IL +N L+A++P
Sbjct 237 FTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPH 296
Query 319 EYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARH-QQGAHWHEHMILVRSGFSAR 377
+ K+L + G G + ++ NE EA + +L+A H + ++ IL R +R
Sbjct 297 VFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSR 356
Query 378 YLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TLWNGVGDV 436
E L+ IPY+ GG +KD+L+ LRV+ NP DD A++R + T +G
Sbjct 357 VFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPA 416
Query 437 GASKLAH-ELIQLPDIDARCERLERHDKVDPKAILILKQ----LDVLQQHVEASIGLALD 491
KL + + + + + + L + L +Q+ E A+
Sbjct 417 TLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVR 476
Query 492 ALAEQLEQNYKTQDWSRRVKDFDL-VKQLGRKHVALSEFLEEYVL-EPVSISEI------ 543
L ++ + S K ++ +K + + ++E LE L EP++++++
Sbjct 477 DLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTL 536
Query 544 -------ERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRV 596
E + D V ++T+H++KG E Y+ + PH ++ D D ++EERR+
Sbjct 537 RDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPH-QSSIDEDNIDEERRL 595
Query 597 LYVALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQ 640
YV +TRA+ EL T + QY E R S FL +LPQ
Sbjct 596 AYVGITRAQKELTFTLCK----ERRQYGELVRPEPSRFLLELPQ 635
>Q05311 DNA helicase II [Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720)]
Length=720
Score = 229 bits (584), Expect = 2e-68
Identities = 194/673 (29%), Positives = 305/673 (45%), Gaps = 57/673 (8%)
Query 17 MSFEQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQIL 75
M L+ LN +Q A + LVLAGAG GKT+ ++ R A L+ I +
Sbjct 1 MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAV 60
Query 76 TFTRRAASEIVTRVEQHLGAPAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDDQM 134
TFT +AA+E+ R+ Q +G G+ TFH LLR + L Q F I+D +DQM
Sbjct 61 TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQM 120
Query 135 -LMFRLLRGK--DKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELM 191
L+ RL++ D+ P+ A ++ L I+ +E Q ++
Sbjct 121 RLLKRLIKAMNLDEKQWPPRQA----MWYINSQKDEGLRPHHIQSYGNPVEQTWQ--KVY 174
Query 192 QSYEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGILQ 251
Q+Y++ +D+ ++L N P ++Q +LVDE QDTN +Q+ ++
Sbjct 175 QAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVR 234
Query 252 PLIEHVG-LFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILDISN 310
L G + VGDD QSIYG+RGA ENI F P A+ + LE+NYRST IL +N
Sbjct 235 LLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAAN 294
Query 311 WLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHMILV 370
L+ ++ K+L G L NE +EA ++ + G + IL
Sbjct 295 ALIENNNGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQCAILY 354
Query 371 RSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TL 429
RS +R LE AL+ ++PYR GG++ E +KD LS LR++ N DD A+ R + T
Sbjct 355 RSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTP 414
Query 430 WNGVGDVGASKLAHELIQLPDIDARCERLERHDKVDPKAILILKQLDVLQQHVEASIGLA 489
G+GD ++++ D + + ++ + L + LQ+ +E
Sbjct 415 TRGIGD-----RTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFME-----L 464
Query 490 LDALAEQLEQNYKTQDWSRRVKDFDL----VKQLGRKHVALSEFLEEYVLEPVSISEIER 545
+DALA++ R +KD L ++ G K E LEE V S +
Sbjct 465 IDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDE 524
Query 546 SGD-----------------------QDLVTIITIHSAKGAEQKVCYVPHVSPNAYPHAR 582
D QD V ++T+HSAKG E ++ + +P
Sbjct 525 DEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQM 584
Query 583 AQGDFDEVEEERRVLYVALTRAENELIIT-KQNYNTWAQDQYDEQGRKIESYFLNDLPQH 641
+ + +EEERR+ YV +TRA +L +T + + ++ Y R F+ +LP+
Sbjct 585 SLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR-----FIGELPEE 639
Query 642 LV-DAHIHQTVPR 653
V + + TV R
Sbjct 640 CVEEVRLRATVSR 652
>Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd)]
Length=727
Score = 223 bits (567), Expect = 5e-66
Identities = 195/678 (29%), Positives = 322/678 (47%), Gaps = 62/678 (9%)
Query 16 LMSFEQLMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIH-RGTPADQIQI 74
+M +L+ LN +Q + LVLAGAG GKT+ + R A LI I
Sbjct 1 MMDISELLDGLNDKQRERVAAPLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60
Query 75 LTFTRRAASEIVTRVEQHLGAPAK----GLRASTFHTFCMYLLRRNPQAFGLGQ-FTIID 129
+TFT +AA+E+ R++ L A+ G+ TFH+ LLR + GL Q F I+D
Sbjct 61 VTFTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILD 120
Query 130 RDDQM-LMFRLLRGKDKNNVLPKAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIA 188
+DQ+ L+ RLL+ + + Q C + ++ + +D I+ + E +
Sbjct 121 SEDQLRLIKRLLKLHNFDEKAFPPKQACWYINNKKDEGLRPND--IEDFNDRQER--EWI 176
Query 189 ELMQSYEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWG 248
++ Q Y+ +D+ ++L V + P ++Q + + +LVDE QDTN +Q+
Sbjct 177 KIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVDEFQDTNKIQYK 236
Query 249 ILQPLIEHVG-LFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQEILD 307
++ L G + VGDD QSIYG+RGA ENI F + AE + LE+NYRST IL+
Sbjct 237 WIKILAGKTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-KAETIRLEQNYRSTANILN 295
Query 308 ISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQDLLARHQQGAHWHEHM 367
+N L+A++ K L +G + NE +EA ++A + + G +
Sbjct 296 SANELIANNSDRLGKNLWTEGEKGDPVGIYSAFNELDEAKFVASQIQDWVEHGGKLDDCA 355
Query 368 ILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL 427
+L RS +R +E ALI C IPYR GG++ E +KD L+ LR++ N QDD A+ R +
Sbjct 356 VLYRSNSQSRVIEEALIRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQDDAAFERVI 415
Query 428 -TLWNGVGDVGASKLAH----------ELIQLPDID-----------ARCERLERHDKVD 465
T G+GD L + + +Q+ + R + L ++D
Sbjct 416 NTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQELINSLQLD 475
Query 466 PKAILILKQLDVLQQHVEASIGLALDALAEQLEQNYKTQDWSRRVKDFDLVKQLGRKHV- 524
+ + Q D + +H L E +Q K + R+++ + + R+ +
Sbjct 476 TAEMPLFAQTDFVIKH---------SGLYEMYQQE-KGEKGEVRIENLEELVTATREFIK 525
Query 525 --------ALSEFLEEYVLEPVSISEIERSGDQDLVTIITIHSAKGAEQKVCYVPHVSPN 576
L+ FL LE E + S Q V ++T+HSAKG E ++ V
Sbjct 526 PDNAEEMTELTAFLTHASLE---AGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEG 582
Query 577 AYPHARAQGDFDEVEEERRVLYVALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLN 636
+P R+ + +EEERR+ YV +TRA+ +L I+ ++ Y ++ R + S F+
Sbjct 583 LFPSFRSFEEPGRLEEERRLAYVGITRAKKKLTISYAE----SRRLYAKEERHLPSRFIA 638
Query 637 DLPQHLV-DAHIHQTVPR 653
+LP+ + + + TV R
Sbjct 639 ELPRECIQEIRLRGTVTR 656
>Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=887
Score = 216 bits (551), Expect = 5e-63
Identities = 183/644 (28%), Positives = 319/644 (50%), Gaps = 70/644 (11%)
Query 26 LNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHRG-TPADQIQILTFTRRAASE 84
LN +Q + + ++ +LAG G GKT+ + AR A+L+ + A+ + I TFT +AA+E
Sbjct 11 LNEEQRISVQSPHKYTQILAGPGSGKTRVLTARVAYLLQKNHIAAEDLIIATFTNKAANE 70
Query 85 IVTRVEQHLG-APAKGLRASTFHTFCMYLLRRNPQAFGLGQ-FTIIDRDD-QMLMFRLLR 141
I R+E LG + A L + TFH+ L + + GL + I DR+D Q +M RLL
Sbjct 71 IKLRIEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQAIMKRLLD 130
Query 142 G--KDKNNVLP--KAAQLCDVYSYARNTQSKLSDALIK-------------QLPEALEHK 184
K KN + + +L + R T+ K + L+K + P+ L+
Sbjct 131 SLKKAKNPIASGIRGQELTPQNALNRITKLKSNGLLVKPGMDQLSLINGLEEPPKELQSH 190
Query 185 VQIAELMQSYEQRKQERHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNP 244
Q EL + Y+ + + D+DD+L + LQ P+ V R K +L+DE QDT+
Sbjct 191 -QSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDCV----RNIKHILIDEFQDTSK 245
Query 245 LQWGILQPL-IEHVGLFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYRSTQ 303
+Q+ +++ L +++ + VGD QSIYGFR A+ N++ E +VL LE NYRS +
Sbjct 246 IQYFLVKLLALQNSDITIVGDPDQSIYGFRSAEIRNLNQMSEDFEGTQVLHLERNYRSAK 305
Query 304 EILDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIAQD---LLARHQQG 360
IL+++ +++ K LK++ LKP +F+ +E+ WIA++ ++ +
Sbjct 306 PILELALSIISQDKSRPKKGLKSNHISSLKPHYRLFETNNKESYWIAREIKRIVGSCPEL 365
Query 361 AHWHEHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDD 420
+++ ILVRS R LE AL +PYR +G K + ++D+++ LRV+ N +D
Sbjct 366 IFYNDIAILVRSSSLTRSLEHALSELGVPYRMVGVNKFFDREEIRDLIAYLRVLAN-KDS 424
Query 421 IAWMRFLTLWNGVGDVGASKLAHELIQLPD---------IDARCERL---ERHDKVDPK- 467
+ +R + + ++G +K+ + + + + E + +R+DK K
Sbjct 425 TSLIRVINV--PPRNIGKTKIDRIIFESERRGLTFWQTLNEVKNENILLSQRNDKSFLKS 482
Query 468 ------AILILKQLDVLQQHVEASIGLALDALAEQLEQNYKTQDWSRRVKD-----FDLV 516
+I L+ + H L L L+E Y + V++ +LV
Sbjct 483 LKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEEKWENVMELV 542
Query 517 KQLGRKHVALSE---------FLEEYVLEPVSISEIERSGDQDLVTIITIHSAKGAEQKV 567
+Q E L+ ++ + ++E ++ G+ VTI T+H+AKG E V
Sbjct 543 QQSDNISCIFYELDYKISTIVLLQNFLTQIALVNEEQKEGESQKVTISTLHAAKGLEWPV 602
Query 568 CYVPHVSPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIIT 611
++P + N PH+R+ D+++EERR+LYV TRA+ L ++
Sbjct 603 VFLPCLCENIIPHSRS----DDLDEERRLLYVGATRAQALLYLS 642
Lambda K H a alpha
0.323 0.137 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 9083916
Database: db28f39705630cabf293631681bdb9de.SwissProt.fasta
Posted date: May 20, 2024 12:01 PM
Number of letters in database: 16,185
Number of sequences in database: 22
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
