BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 213c530ac2aef2355b5a1247e28df264.SwissProt.fasta
           30 sequences; 5,865 total letters



Query= ACIAD0504

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus...  51.6    2e-11
Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus...  51.6    2e-11
Q7A3C7 HTH-type transcriptional regulator SA2364 [Staphylococcus ...  49.7    8e-11
Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococc...  49.7    8e-11
Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus ...  49.7    8e-11
Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus...  49.7    8e-11
Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylo...  49.7    8e-11
A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacteriu...  49.7    1e-10
Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional r...  47.4    5e-10
Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional r...  47.4    5e-10
Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional r...  47.4    5e-10
A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional r...  47.4    5e-10
Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional r...  47.4    5e-10
P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri]    47.4    7e-10
P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli ...  47.4    7e-10
P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli ...  47.4    7e-10
P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrh...  47.0    9e-10
P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus au...  46.6    1e-09
P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus ha...  46.6    1e-09
P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus au...  46.6    1e-09
Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional r...  45.8    2e-09
Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional r...  45.8    2e-09
P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri]    45.4    3e-09
P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli ...  45.4    3e-09
P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli ...  45.4    3e-09
P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli ...  45.4    3e-09
P51561 Tetracycline repressor protein class H [Pasteurella multoc...  44.7    5e-09
P03039 Tetracycline repressor protein class C [Escherichia coli]      43.9    1e-08
P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli (s...  43.9    1e-08
P03038 Tetracycline repressor protein class A from transposon 172...  43.1    2e-08


>Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus 
aureus (strain bovine RF122 / ET3-1)]
Length=185

 Score = 51.6 bits (122),  Expect = 2e-11
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 38/152 (25%)

Query  7    LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI-----------  55
            ++ + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++           
Sbjct  6    IENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCFYVIQRDLNT  65

Query  56   ----IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQ  97
                 K++ + Y  +  E++ +  D LL                N+K+R++Q        
Sbjct  66   FITQFKQIKDDYHSD-YEVMKVSLDYLLQFKIDNKTLLHCIEAGNNKLRFYQSAF-----  119

Query  98   YRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            Y+ L    Y L +++DD   I+ KF   ++ Q
Sbjct  120  YQELFDFYYDLFKSDDD---IFTKFKTDMLLQ  148


>Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus 
aureus (strain MRSA252)]
Length=185

 Score = 51.6 bits (122),  Expect = 2e-11
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDHKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD   IY KF   ++ Q
Sbjct  121  QELFYFYYDLFKSDDD---IYTKFKTDMLLQ  148


>Q7A3C7 HTH-type transcriptional regulator SA2364 [Staphylococcus 
aureus (strain N315)]
Length=185

 Score = 49.7 bits (117),  Expect = 8e-11
 Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD    Y KF   ++ Q
Sbjct  121  QELFDFYYDLFKSDDD---TYTKFKTDMLLQ  148


>Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococcus 
aureus (strain COL)]
Length=185

 Score = 49.7 bits (117),  Expect = 8e-11
 Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD    Y KF   ++ Q
Sbjct  121  QELFDFYYDLFKSDDD---TYTKFKTDMLLQ  148


>Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus 
aureus (strain MW2)]
Length=185

 Score = 49.7 bits (117),  Expect = 8e-11
 Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD    Y KF   ++ Q
Sbjct  121  QELFDFYYDLFKSDDD---TYTKFKTDMLLQ  148


>Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus 
aureus (strain Mu50 / ATCC 700699)]
Length=185

 Score = 49.7 bits (117),  Expect = 8e-11
 Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD    Y KF   ++ Q
Sbjct  121  QELFDFYYDLFKSDDD---TYTKFKTDMLLQ  148


>Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylococcus 
aureus (strain NCTC 8325 / PS 47)]
Length=185

 Score = 49.7 bits (117),  Expect = 8e-11
 Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)

Query  8    KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------  55
            + + RI +I+ +LF+E G  +++ N IA ELGI  G LY HF++K ++            
Sbjct  7    ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF  66

Query  56   ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY  98
                K++ + Y     E++ +  D LL                N+K+R++Q        Y
Sbjct  67   ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y  120

Query  99   RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            + L    Y L +++DD    Y KF   ++ Q
Sbjct  121  QELFDFYYDLFKSDDD---TYTKFKTDMLLQ  148


>A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacterium 
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=205

 Score = 49.7 bits (117),  Expect = 1e-10
 Identities = 19/60 (32%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  4   SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHY  63
           S+    +D +LQ++  +F +RG ++ T   IA   GI  G+LY+HF++K+++++E++  +
Sbjct  7   SQPASRRDELLQLAATMFADRGLKATTVRDIADSAGILSGSLYHHFKSKEQMVEEVLRDF  66


>Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus aureus (strain MRSA252)]
Length=186

 Score = 47.4 bits (111),  Expect = 5e-10
 Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)

Query  10   KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE  69
            KD+I+  ++ LF+E+G    T + IA  + I   +LYYHF +K+ I ++ ++        
Sbjct  2    KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN  61

Query  70   MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            ++ + +++   + D +  +Q L   ++     +  +Y  + N  +      +F+G +  Q
Sbjct  62   IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ  113

Query  130  GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH  179
             Q + Q+       F D   +KMT  + + LI+   + L +W    +F    G + +S  
Sbjct  114  IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS  170

Query  180  LEEKWVWQALRQMVFLE  196
              +  V+  L   +FL+
Sbjct  171  QFKDEVYSLLN--IFLK  185


>Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus aureus (strain N315)]
Length=186

 Score = 47.4 bits (111),  Expect = 5e-10
 Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)

Query  10   KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE  69
            KD+I+  ++ LF+E+G    T + IA  + I   +LYYHF +K+ I ++ ++        
Sbjct  2    KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN  61

Query  70   MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            ++ + +++   + D +  +Q L   ++     +  +Y  + N  +      +F+G +  Q
Sbjct  62   IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ  113

Query  130  GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH  179
             Q + Q+       F D   +KMT  + + LI+   + L +W    +F    G + +S  
Sbjct  114  IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS  170

Query  180  LEEKWVWQALRQMVFLE  196
              +  V+  L   +FL+
Sbjct  171  QFKDEVYSLLN--IFLK  185


>Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus aureus (strain Mu50 / ATCC 
700699)]
Length=186

 Score = 47.4 bits (111),  Expect = 5e-10
 Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)

Query  10   KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE  69
            KD+I+  ++ LF+E+G    T + IA  + I   +LYYHF +K+ I ++ ++        
Sbjct  2    KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN  61

Query  70   MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            ++ + +++   + D +  +Q L   ++     +  +Y  + N  +      +F+G +  Q
Sbjct  62   IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ  113

Query  130  GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH  179
             Q + Q+       F D   +KMT  + + LI+   + L +W    +F    G + +S  
Sbjct  114  IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS  170

Query  180  LEEKWVWQALRQMVFLE  196
              +  V+  L   +FL+
Sbjct  171  QFKDEVYSLLN--IFLK  185


>A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus aureus (strain Newman)]
Length=186

 Score = 47.4 bits (111),  Expect = 5e-10
 Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)

Query  10   KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE  69
            KD+I+  ++ LF+E+G    T + IA  + I   +LYYHF +K+ I ++ ++        
Sbjct  2    KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN  61

Query  70   MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            ++ + +++   + D +  +Q L   ++     +  +Y  + N  +      +F+G +  Q
Sbjct  62   IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ  113

Query  130  GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH  179
             Q + Q+       F D   +KMT  + + LI+   + L +W    +F    G + +S  
Sbjct  114  IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS  170

Query  180  LEEKWVWQALRQMVFLE  196
              +  V+  L   +FL+
Sbjct  171  QFKDEVYSLLN--IFLK  185


>Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus aureus (strain NCTC 8325 / 
PS 47)]
Length=186

 Score = 47.4 bits (111),  Expect = 5e-10
 Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)

Query  10   KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE  69
            KD+I+  ++ LF+E+G    T + IA  + I   +LYYHF +K+ I ++ ++        
Sbjct  2    KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN  61

Query  70   MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ  129
            ++ + +++   + D +  +Q L   ++     +  +Y  + N  +      +F+G +  Q
Sbjct  62   IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ  113

Query  130  GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH  179
             Q + Q+       F D   +KMT  + + LI+   + L +W    +F    G + +S  
Sbjct  114  IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS  170

Query  180  LEEKWVWQALRQMVFLE  196
              +  V+  L   +FL+
Sbjct  171  QFKDEVYSLLN--IFLK  185


>P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri]
Length=215

 Score = 47.4 bits (111),  Expect = 7e-10
 Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)

Query  8   KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           +T+  IL ++L+LF+++G  S +   IA   G++ G +Y+HF++K ++  E+ E
Sbjct  11  ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE  64


>P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=215

 Score = 47.4 bits (111),  Expect = 7e-10
 Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)

Query  8   KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           +T+  IL ++L+LF+++G  S +   IA   G++ G +Y+HF++K ++  E+ E
Sbjct  11  ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE  64


>P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli 
(strain K12)]
Length=215

 Score = 47.4 bits (111),  Expect = 7e-10
 Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)

Query  8   KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           +T+  IL ++L+LF+++G  S +   IA   G++ G +Y+HF++K ++  E+ E
Sbjct  11  ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE  64


>P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrhoeae]
Length=210

 Score = 47.0 bits (110),  Expect = 9e-10
 Identities = 19/58 (33%), Positives = 36/58 (62%), Gaps = 0/58 (0%)

Query  4   SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           ++ LKTK+ ++  +L+ F  +G    + N IA   G++ G LY+HF+NK+++   L +
Sbjct  6   TEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQ  63


>P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus 
aureus (strain Mu50 / ATCC 700699)]
Length=188

 Score = 46.6 bits (109),  Expect = 1e-09
 Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)

Query  7    LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE  66
            +  KD+IL ++ +LF + G  + TT  I      S GNLYYHF+ K+ +  E++   + +
Sbjct  1    MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK  60

Query  67   TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ  125
              E     + +     +K   +  LS        L  + Y+ ++N   +F   Y K    
Sbjct  61   WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS  111

Query  126  VMQQGQKIYQAFVDA  140
            + ++  K+   ++DA
Sbjct  112  INEKMNKLENKYIDA  126


>P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus 
haemolyticus]
Length=188

 Score = 46.6 bits (109),  Expect = 1e-09
 Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)

Query  7    LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE  66
            +  KD+IL ++ +LF + G  + TT  I      S GNLYYHF+ K+ +  E++   + +
Sbjct  1    MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK  60

Query  67   TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ  125
              E     + +     +K   +  LS        L  + Y+ ++N   +F   Y K    
Sbjct  61   WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS  111

Query  126  VMQQGQKIYQAFVDA  140
            + ++  K+   ++DA
Sbjct  112  INEKMNKLENKYIDA  126


>P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus 
aureus]
Length=188

 Score = 46.6 bits (109),  Expect = 1e-09
 Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)

Query  7    LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE  66
            +  KD+IL ++ +LF + G  + TT  I      S GNLYYHF+ K+ +  E++   + +
Sbjct  1    MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK  60

Query  67   TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ  125
              E     + +     +K   +  LS        L  + Y+ ++N   +F   Y K    
Sbjct  61   WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS  111

Query  126  VMQQGQKIYQAFVDA  140
            + ++  K+   ++DA
Sbjct  112  INEKMNKLENKYIDA  126


>Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus epidermidis (strain ATCC 35984 
/ RP62A)]
Length=185

 Score = 45.8 bits (107),  Expect = 2e-09
 Identities = 19/53 (36%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  10  KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH  62
           KD+I+  ++ LF+E+G    T + I+  + I   +LYYH+ NK+EI ++ +E+
Sbjct  2   KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN  54


>Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional 
regulator IcaR [Staphylococcus epidermidis]
Length=185

 Score = 45.8 bits (107),  Expect = 2e-09
 Identities = 19/53 (36%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  10  KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH  62
           KD+I+  ++ LF+E+G    T + I+  + I   +LYYH+ NK+EI ++ +E+
Sbjct  2   KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN  54


>P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri]
Length=196

 Score = 45.4 bits (106),  Expect = 3e-09
 Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)

Query  9   TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL  68
           T+ RIL  + ++F+E G  S +   I     ISPG LY+HF +K+ +I+ ++   Q+  L
Sbjct  12  TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL  71

Query  69  EMLALP  74
                P
Sbjct  72  ARFREP  77


>P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli 
(strain K12)]
Length=196

 Score = 45.4 bits (106),  Expect = 3e-09
 Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)

Query  9   TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL  68
           T+ RIL  + ++F+E G  S +   I     ISPG LY+HF +K+ +I+ ++   Q+  L
Sbjct  12  TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL  71

Query  69  EMLALP  74
                P
Sbjct  72  ARFREP  77


>P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=196

 Score = 45.4 bits (106),  Expect = 3e-09
 Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)

Query  9   TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL  68
           T+ RIL  + ++F+E G  S +   I     ISPG LY+HF +K+ +I+ ++   Q+  L
Sbjct  12  TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL  71

Query  69  EMLALP  74
                P
Sbjct  72  ARFREP  77


>P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli 
O157:H7]
Length=196

 Score = 45.4 bits (106),  Expect = 3e-09
 Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)

Query  9   TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL  68
           T+ RIL  + ++F+E G  S +   I     ISPG LY+HF +K+ +I+ ++   Q+  L
Sbjct  12  TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL  71

Query  69  EMLALP  74
                P
Sbjct  72  ARFREP  77


>P51561 Tetracycline repressor protein class H [Pasteurella multocida]
Length=207

 Score = 44.7 bits (104),  Expect = 5e-09
 Identities = 22/68 (32%), Positives = 40/68 (59%), Gaps = 1/68 (1%)

Query  10  KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH-YQKETL  68
           K++++  +L L NE G   +TT ++A ++G+    LY+H +NK+ ++  L E   QK   
Sbjct  6   KEQVIDDALILLNEVGIEGLTTRNVAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHH  65

Query  69  EMLALPED  76
            +L LP +
Sbjct  66  HVLPLPNE  73


>P03039 Tetracycline repressor protein class C [Escherichia coli]
Length=219

 Score = 43.9 bits (102),  Expect = 1e-08
 Identities = 17/52 (33%), Positives = 33/52 (63%), Gaps = 0/52 (0%)

Query  10  KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           ++ +++ +L+L N+ G   +TT  +A  LG+    LY+HF+NK+ ++  L E
Sbjct  6   REAVIRTALELLNDVGMEGLTTRRLAERLGVQQPALYWHFKNKRALLDALAE  57


 Score = 18.5 bits (36),  Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)

Query  136  AFVDAGL--MKMTTSEIEAL  153
            A +  GL  M++TT++IE L
Sbjct  195  ALIIGGLEKMRLTTNDIEVL  214


>P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli 
(strain K12)]
Length=220

 Score = 43.9 bits (102),  Expect = 1e-08
 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query  4    SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKE--LME  61
            ++ LKT+  +++ ++  F + G    T N IA    ++ G +Y+HF NK ++  E  L +
Sbjct  7    AEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEMWLQQ  66

Query  62   HYQKETLE---MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDD  114
               +E ++      L  D      +K+        ++ + + L + +YH  E ND+
Sbjct  67   PSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFNDE  122


>P03038 Tetracycline repressor protein class A from transposon 
1721 [Escherichia coli]
Length=216

 Score = 43.1 bits (100),  Expect = 2e-08
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  13  ILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME  61
           +++ +L L NE G   +TT  +A  LG+    LY+HFRNK+ ++  L E
Sbjct  9   VIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAE  57



Lambda      K        H        a         alpha
   0.323    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845370


  Database: 213c530ac2aef2355b5a1247e28df264.SwissProt.fasta
    Posted date:  May 20, 2024  5:00 AM
  Number of letters in database: 5,865
  Number of sequences in database:  30



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40