Comparative Genomics

ACIAD0508 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: db23f2baffff689f7fba03d1128fdd12.SwissProt.fasta
           17 sequences; 3,990 total letters



Query= ACIAD0508

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P64100 Biopolymer transport protein ExbB [Neisseria meningitidis ...  115     2e-35
P64099 Biopolymer transport protein ExbB [Neisseria meningitidis ...  115     2e-35
P95375 Biopolymer transport protein ExbB [Neisseria meningitidis ...  115     2e-35
O06433 Biopolymer transport protein ExbB [Neisseria gonorrhoeae]      113     8e-35
P0C7L9 Biopolymer transport protein ExbB [Xanthomonas campestris ...  105     3e-31
B0RLE6 Biopolymer transport protein ExbB [Xanthomonas campestris ...  105     3e-31
Q05605 Biopolymer transport protein ExbB [Pseudomonas putida]         106     5e-31
P0ABV1 Tol-Pal system protein TolQ [Shigella flexneri]                97.1    2e-28
P0ABV0 Tol-Pal system protein TolQ [Escherichia coli O157:H7]         97.1    2e-28
P0ABU9 Tol-Pal system protein TolQ [Escherichia coli (strain K12)]    97.1    2e-28
P0A1H8 Biopolymer transport protein ExbB [Salmonella typhi]           94.4    3e-27
P0A1H7 Biopolymer transport protein ExbB [Salmonella typhimurium ...  94.4    3e-27
P0ABU8 Biopolymer transport protein ExbB [Escherichia coli O157:H7]   93.6    7e-27
P0ABU7 Biopolymer transport protein ExbB [Escherichia coli (strai...  93.6    7e-27
P43768 Tol-Pal system protein TolQ [Haemophilus influenzae (strai...  87.8    7e-25
P50598 Tol-Pal system protein TolQ [Pseudomonas aeruginosa (strai...  77.0    9e-21
O51808 Biopolymer transport protein ExbB [Haemophilus ducreyi (st...  47.0    2e-10


>P64100 Biopolymer transport protein ExbB [Neisseria meningitidis 
serogroup B (strain MC58)]
Length=220

 Score = 115 bits (288),  Expect = 2e-35
 Identities = 75/220 (34%), Positives = 110/220 (50%), Gaps = 32/220 (15%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLM-------GTRQLKQQAY------  47
            MN  + ++  D V   ++ ++L MSI TW + +LR +       G   +K+         
Sbjct  1    MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLN  60

Query  48   ----------AQLSKALSSLKAKFTHLTFEQRKAVAEQALLRQ---ISAEKSNAE-----  89
                      A LSK        + +    +   +A+   L +   I    S A+     
Sbjct  61   DAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRF  120

Query  90   -KGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
              G+  L +I + APF+GLFGTVWGI+HAL+ +G+SGQ  +A VA P+GEAL+ T  GL 
Sbjct  121  DYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLF  180

Query  149  VAIPAVLAYNICVRFNRGLAHDLQDQAHSLLIDTMLQQES  188
            VAIPAVLAYN   R  + L  DL   AH L +  + Q++S
Sbjct  181  VAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQKDS  220


>P64099 Biopolymer transport protein ExbB [Neisseria meningitidis 
serogroup A / serotype 4A (strain DSM 15465 / Z2491)]
Length=220

 Score = 115 bits (288),  Expect = 2e-35
 Identities = 75/220 (34%), Positives = 110/220 (50%), Gaps = 32/220 (15%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLM-------GTRQLKQQAY------  47
            MN  + ++  D V   ++ ++L MSI TW + +LR +       G   +K+         
Sbjct  1    MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLN  60

Query  48   ----------AQLSKALSSLKAKFTHLTFEQRKAVAEQALLRQ---ISAEKSNAE-----  89
                      A LSK        + +    +   +A+   L +   I    S A+     
Sbjct  61   DAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRF  120

Query  90   -KGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
              G+  L +I + APF+GLFGTVWGI+HAL+ +G+SGQ  +A VA P+GEAL+ T  GL 
Sbjct  121  DYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLF  180

Query  149  VAIPAVLAYNICVRFNRGLAHDLQDQAHSLLIDTMLQQES  188
            VAIPAVLAYN   R  + L  DL   AH L +  + Q++S
Sbjct  181  VAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQKDS  220


>P95375 Biopolymer transport protein ExbB [Neisseria meningitidis 
serogroup C]
Length=220

 Score = 115 bits (288),  Expect = 2e-35
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 32/220 (15%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLM-------GTRQLKQQAYAQLS--  51
            MN  + ++  D V   ++ ++L MSI TW + +LR +       G   +K+     LS  
Sbjct  1    MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDNLSLN  60

Query  52   ---KALSSLKAKFTHLTFE--------QRKAVAEQA--------LLRQISAEKSNAEK--  90
               + + ++ A  + L  E        +R   +E A        L+ QI    +   +  
Sbjct  61   EAVEKVRAVDAPLSKLAQEALQFYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRF  120

Query  91   --GVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
              G+  L +I + APF+GLFGTVWGI+HAL+ +G+SGQ  +A VA P+GEAL+ T  GL 
Sbjct  121  DYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLF  180

Query  149  VAIPAVLAYNICVRFNRGLAHDLQDQAHSLLIDTMLQQES  188
            VAIPAVLAYN   R  + L  DL   AH L +  + Q++S
Sbjct  181  VAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQKDS  220


>O06433 Biopolymer transport protein ExbB [Neisseria gonorrhoeae]
Length=220

 Score = 113 bits (283),  Expect = 8e-35
 Identities = 74/220 (34%), Positives = 109/220 (50%), Gaps = 32/220 (15%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLM-------GTRQLKQQAY------  47
            MN  + ++  D V   ++ ++L MS  TW + +LR +       G   +K+         
Sbjct  1    MNLKLVFESGDPVLIGVFVLMLLMSTVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLN  60

Query  48   ----------AQLSKALSSLKAKFTHLTFEQRKAVAEQALLRQ---ISAEKSNAE-----  89
                      A LSK        + +    +   +A+   L +   I    S A+     
Sbjct  61   DAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRF  120

Query  90   -KGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
              G+  L +I + APF+GLFGTVWGI+HAL+ +G+SGQ  +A VA P+GEAL+ T  GL 
Sbjct  121  DYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLF  180

Query  149  VAIPAVLAYNICVRFNRGLAHDLQDQAHSLLIDTMLQQES  188
            VAIPAVLAYN   R  + L  DL   AH L +  + Q++S
Sbjct  181  VAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQKDS  220


>P0C7L9 Biopolymer transport protein ExbB [Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 
/ LMG 568 / P 25)]
Length=253

 Score = 105 bits (261),  Expect = 3e-31
 Identities = 71/205 (35%), Positives = 100/205 (49%), Gaps = 43/205 (21%)

Query  12   AVSKTLYFVLLAMSIATWTIFILRLMGTRQLK-------------------------QQA  46
            AVS  +   L+AMS A+W   ++ +    +LK                         Q A
Sbjct  40   AVSWVVLITLIAMSAASWYWTVINIFRATRLKSAADRVTTAFWDAPNAQDAIRAMEEQPA  99

Query  47   YAQLSK-ALSSLKAKFTHLTFE----------QRKAVAEQALLRQISAEKSNAEKGVAVL  95
                SK AL + +A   H   E           R    ++AL + ++ E +  + G+ +L
Sbjct  100  SEPFSKIALDAAQAAAHHQRAEGSTGGMGESLSRSEFVDRALRQAVTRESTKLQSGMTLL  159

Query  96   GTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVL  155
             T+ + APFVGL GTVWGI+ AL+ +G +G A +  VA PVGEALIMT +GL VAIPAV 
Sbjct  160  ATVGATAPFVGLLGTVWGIYGALIKIGATGSASIDAVAGPVGEALIMTAIGLFVAIPAVF  219

Query  156  AYNICVRFNRGL-------AHDLQD  173
            A+N   + N  +       AHDL D
Sbjct  220  AFNFFSKVNSSVIAKFDTFAHDLHD  244


>B0RLE6 Biopolymer transport protein ExbB [Xanthomonas campestris 
pv. campestris (strain B100)]
Length=253

 Score = 105 bits (261),  Expect = 3e-31
 Identities = 71/205 (35%), Positives = 100/205 (49%), Gaps = 43/205 (21%)

Query  12   AVSKTLYFVLLAMSIATWTIFILRLMGTRQLK-------------------------QQA  46
            AVS  +   L+AMS A+W   ++ +    +LK                         Q A
Sbjct  40   AVSWVVLITLIAMSAASWYWTVINIFRATRLKSAADRVTTAFWDAPNAQDAIRAMEEQPA  99

Query  47   YAQLSK-ALSSLKAKFTHLTFE----------QRKAVAEQALLRQISAEKSNAEKGVAVL  95
                SK AL + +A   H   E           R    ++AL + ++ E +  + G+ +L
Sbjct  100  SEPFSKIALDAAQAAAHHQRAEGSTGGMGESLSRSEFVDRALRQAVTRESTKLQSGMTLL  159

Query  96   GTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVL  155
             T+ + APFVGL GTVWGI+ AL+ +G +G A +  VA PVGEALIMT +GL VAIPAV 
Sbjct  160  ATVGATAPFVGLLGTVWGIYGALIKIGATGSASIDAVAGPVGEALIMTAIGLFVAIPAVF  219

Query  156  AYNICVRFNRGL-------AHDLQD  173
            A+N   + N  +       AHDL D
Sbjct  220  AFNFFSKVNSSVIAKFDTFAHDLHD  244


>Q05605 Biopolymer transport protein ExbB [Pseudomonas putida]
Length=329

 Score = 106 bits (264),  Expect = 5e-31
 Identities = 74/219 (34%), Positives = 105/219 (48%), Gaps = 30/219 (14%)

Query  7    WQHADAVSKTLYFVLLAMSIATWTIFILR---LMGTRQLKQQAYAQLSKALSSLKAK---  60
            +++AD V K +   L   SI TWTI+I +   LMG ++  +   AQL K+ S  +A    
Sbjct  107  YKNADIVVKIVMIGLAIASIITWTIWIAKGFELMGAKRRLRGEIAQLKKSASLKEASEVS  166

Query  61   ---------FTHLTFEQRKAVAEQA------------LLRQISAEKSNAEKGVAVLGTIA  99
                       H   E+ +  A               L R ++A   N   G  VL TI 
Sbjct  167  NKEGTLAHTLVHDALEEMRLSANTREKEGIKERVAFRLERLVAASGRNMSSGTGVLATIG  226

Query  100  SIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAYNI  159
            S APFVGLFGTVWGI ++ + + K+    LA VA  + EAL+ T LGL  AIPAV+ YN+
Sbjct  227  STAPFVGLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNV  286

Query  160  CVRFNRGLAHDLQDQAHSLLIDTMLQQESVDPKSETKAA  198
              R   G    + D +  +L   +L    +D +   +AA
Sbjct  287  FARSIAGYKAQVSDASAQVL---LLVSRDLDHQGSERAA  322


 Score = 17.7 bits (34),  Expect = 2.8
 Identities = 17/56 (30%), Positives = 24/56 (43%), Gaps = 3/56 (5%)

Query  117  ALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAI-PAVLAYNICVRFNRGLAHDL  171
            A  A   +  A  A  + PV +A     +   VA+ P V A  +      G+AHDL
Sbjct  48   AAPATPAAAPAPAADGSAPVADAPAAAPVDAPVAVDPGVEA--LVEDTTLGMAHDL  101


>P0ABV1 Tol-Pal system protein TolQ [Shigella flexneri]
Length=230

 Score = 97.1 bits (240),  Expect = 2e-28
 Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 32/190 (17%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLMGTRQLKQQAYA---------QLS  51
            MN    +  A  + K +  +L+  SIA+W I I R        ++A A         +LS
Sbjct  4    MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELS  63

Query  52   KALSSLKAKFTHLTFEQR--------------------KAVAE---QALLRQISAEKSNA  88
            +     + K  +LT  ++                    +AV E   +A+   ++ E  N 
Sbjct  64   RLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENL  123

Query  89   EKGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
            E  +  LGT+ SI+P++GLFGTVWGI HA +A+G   QA L  VA  + EALI T +GL 
Sbjct  124  ETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLF  183

Query  149  VAIPAVLAYN  158
             AIPAV+AYN
Sbjct  184  AAIPAVMAYN  193


>P0ABV0 Tol-Pal system protein TolQ [Escherichia coli O157:H7]
Length=230

 Score = 97.1 bits (240),  Expect = 2e-28
 Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 32/190 (17%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLMGTRQLKQQAYA---------QLS  51
            MN    +  A  + K +  +L+  SIA+W I I R        ++A A         +LS
Sbjct  4    MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELS  63

Query  52   KALSSLKAKFTHLTFEQR--------------------KAVAE---QALLRQISAEKSNA  88
            +     + K  +LT  ++                    +AV E   +A+   ++ E  N 
Sbjct  64   RLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENL  123

Query  89   EKGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
            E  +  LGT+ SI+P++GLFGTVWGI HA +A+G   QA L  VA  + EALI T +GL 
Sbjct  124  ETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLF  183

Query  149  VAIPAVLAYN  158
             AIPAV+AYN
Sbjct  184  AAIPAVMAYN  193


>P0ABU9 Tol-Pal system protein TolQ [Escherichia coli (strain 
K12)]
Length=230

 Score = 97.1 bits (240),  Expect = 2e-28
 Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 32/190 (17%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILRLMGTRQLKQQAYA---------QLS  51
            MN    +  A  + K +  +L+  SIA+W I I R        ++A A         +LS
Sbjct  4    MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELS  63

Query  52   KALSSLKAKFTHLTFEQR--------------------KAVAE---QALLRQISAEKSNA  88
            +     + K  +LT  ++                    +AV E   +A+   ++ E  N 
Sbjct  64   RLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENL  123

Query  89   EKGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
            E  +  LGT+ SI+P++GLFGTVWGI HA +A+G   QA L  VA  + EALI T +GL 
Sbjct  124  ETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLF  183

Query  149  VAIPAVLAYN  158
             AIPAV+AYN
Sbjct  184  AAIPAVMAYN  193


>P0A1H8 Biopolymer transport protein ExbB [Salmonella typhi]
Length=244

 Score = 94.4 bits (233),  Expect = 3e-27
 Identities = 69/220 (31%), Positives = 101/220 (46%), Gaps = 32/220 (15%)

Query  7    WQHADAVSKTLYFVLLAMSIATWTIFI-----------------LRLMGTRQLKQQAYAQ  49
            +QHAD V K +   L+  S+ TW IF                  L+L   R L Q +   
Sbjct  16   YQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADARSLDQASDIA  75

Query  50   LSKALSSLKAKFTHLT---------FEQRKAVAEQA---LLRQISAEKSNAEKGVAVLGT  97
               +  SL A+  +            E  + + E+    L R+++A      +G   L T
Sbjct  76   AGFSAKSLSAQLINEAQNELELSQGSEDNEGIKERTGFRLERRVAAVGRYMGRGNGYLAT  135

Query  98   IASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAY  157
            I +I+PFVGLFGTVWGI ++ + + ++    LA VA  + EAL+ T +GL  AIPAV+ Y
Sbjct  136  IGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIY  195

Query  158  NICVRFNRGLAHDLQDQAHSLLIDTMLQQESVDPKSETKA  197
            NI  R        L D A  +L   +LQ   +D  +   A
Sbjct  196  NIFARQIGSYKATLGDVAAQVL---LLQSRDLDLNASASA  232


>P0A1H7 Biopolymer transport protein ExbB [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=244

 Score = 94.4 bits (233),  Expect = 3e-27
 Identities = 69/220 (31%), Positives = 101/220 (46%), Gaps = 32/220 (15%)

Query  7    WQHADAVSKTLYFVLLAMSIATWTIFI-----------------LRLMGTRQLKQQAYAQ  49
            +QHAD V K +   L+  S+ TW IF                  L+L   R L Q +   
Sbjct  16   YQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADARSLDQASDIA  75

Query  50   LSKALSSLKAKFTHLT---------FEQRKAVAEQA---LLRQISAEKSNAEKGVAVLGT  97
               +  SL A+  +            E  + + E+    L R+++A      +G   L T
Sbjct  76   AGFSAKSLSAQLINEAQNELELSQGSEDNEGIKERTGFRLERRVAAVGRYMGRGNGYLAT  135

Query  98   IASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAY  157
            I +I+PFVGLFGTVWGI ++ + + ++    LA VA  + EAL+ T +GL  AIPAV+ Y
Sbjct  136  IGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIY  195

Query  158  NICVRFNRGLAHDLQDQAHSLLIDTMLQQESVDPKSETKA  197
            NI  R        L D A  +L   +LQ   +D  +   A
Sbjct  196  NIFARQIGSYKATLGDVAAQVL---LLQSRDLDLNASASA  232


>P0ABU8 Biopolymer transport protein ExbB [Escherichia coli O157:H7]
Length=244

 Score = 93.6 bits (231),  Expect = 7e-27
 Identities = 70/220 (32%), Positives = 108/220 (49%), Gaps = 32/220 (15%)

Query  7    WQHADAVSKTLYFVLLAMSIATWTIFILRLMG----TRQLKQQ----AYAQLSKALSSLK  58
            +QHAD V K +   L+  S+ TW IF  + +      R+LK++    A A+     + + 
Sbjct  16   YQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIA  75

Query  59   AKF------THLTFEQR------------KAVAEQA---LLRQISAEKSNAEKGVAVLGT  97
            A F       HL  E +            + + E+    L R+++A      +G   L T
Sbjct  76   ADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAAVGRQMGRGNGYLAT  135

Query  98   IASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAY  157
            I +I+PFVGLFGTVWGI ++ + + ++    LA VA  + EAL+ T +GL  AIPAV+ Y
Sbjct  136  IGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIY  195

Query  158  NICVRFNRGLAHDLQDQAHSLLIDTMLQQESVDPKSETKA  197
            N+  R   G    L D A  +L   +LQ   +D ++   A
Sbjct  196  NVFARQIGGFKAMLGDVAAQVL---LLQSRDLDLEASAAA  232


>P0ABU7 Biopolymer transport protein ExbB [Escherichia coli (strain 
K12)]
Length=244

 Score = 93.6 bits (231),  Expect = 7e-27
 Identities = 70/220 (32%), Positives = 108/220 (49%), Gaps = 32/220 (15%)

Query  7    WQHADAVSKTLYFVLLAMSIATWTIFILRLMG----TRQLKQQ----AYAQLSKALSSLK  58
            +QHAD V K +   L+  S+ TW IF  + +      R+LK++    A A+     + + 
Sbjct  16   YQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIA  75

Query  59   AKF------THLTFEQR------------KAVAEQA---LLRQISAEKSNAEKGVAVLGT  97
            A F       HL  E +            + + E+    L R+++A      +G   L T
Sbjct  76   ADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAAVGRQMGRGNGYLAT  135

Query  98   IASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAY  157
            I +I+PFVGLFGTVWGI ++ + + ++    LA VA  + EAL+ T +GL  AIPAV+ Y
Sbjct  136  IGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIY  195

Query  158  NICVRFNRGLAHDLQDQAHSLLIDTMLQQESVDPKSETKA  197
            N+  R   G    L D A  +L   +LQ   +D ++   A
Sbjct  196  NVFARQIGGFKAMLGDVAAQVL---LLQSRDLDLEASAAA  232


>P43768 Tol-Pal system protein TolQ [Haemophilus influenzae (strain 
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=228

 Score = 87.8 bits (216),  Expect = 7e-25
 Identities = 63/190 (33%), Positives = 96/190 (51%), Gaps = 32/190 (17%)

Query  1    MNFSVYWQHADAVSKTLYFVLLAMSIATWTIFILR-------LMGTRQLKQQAYA--QLS  51
            +NF   +  A  V + +  +L++ SI +W I I R       L   R  + + ++   L+
Sbjct  5    LNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLN  64

Query  52   KALSSLKAKFTHLT------------FEQRKAV---AEQALLR--------QISAEKSNA  88
            K    L  +   LT            F + K V   A +A+++         ++ E  + 
Sbjct  65   KLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESL  124

Query  89   EKGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLA  148
            E  V  L T+AS++P++GLFGTVWGI HA +A+  + QA L  VA  + EALI T +GL 
Sbjct  125  ENRVPFLATVASVSPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIATAIGLF  184

Query  149  VAIPAVLAYN  158
             AIPAV+AYN
Sbjct  185  AAIPAVMAYN  194


>P50598 Tol-Pal system protein TolQ [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 
12228 / 1C / PRS 101 / PAO1)]
Length=231

 Score = 77.0 bits (188),  Expect = 9e-21
 Identities = 40/84 (48%), Positives = 53/84 (63%), Gaps = 0/84 (0%)

Query  75   QALLRQISAEKSNAEKGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVAT  134
            +A+   IS E+   E  +  L T+ S +P+VGLFGTVWGI ++   +    QA LA VA 
Sbjct  115  RAMRVAISREEEKLEASLPFLATVGSTSPYVGLFGTVWGIMNSFRGLATVQQATLATVAP  174

Query  135  PVGEALIMTGLGLAVAIPAVLAYN  158
             + EALI T +GL  AIPAV+AYN
Sbjct  175  GIAEALIATAIGLFAAIPAVIAYN  198


>O51808 Biopolymer transport protein ExbB [Haemophilus ducreyi 
(strain 35000HP / ATCC 700724)]
Length=150

 Score = 47.0 bits (110),  Expect = 2e-10
 Identities = 29/77 (38%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  90   KGVAVLGTIASIAPFVGLFGTVWGIFHALVAVGKS-GQAGLAQVATPVGEALIMTGLGLA  148
            + +  + TI + AP+VGL GTV GI      +G S G+   A +   +  AL  T  G+ 
Sbjct  58   RNLTTISTIGANAPYVGLLGTVLGILLTFYHLGHSGGEIDAASIMVHLSLALKATAAGIL  117

Query  149  VAIPAVLAYNICVRFNR  165
            VAIPA++ Y+    FNR
Sbjct  118  VAIPAMMFYS---GFNR  131



Lambda      K        H        a         alpha
   0.324    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549931


  Database: db23f2baffff689f7fba03d1128fdd12.SwissProt.fasta
    Posted date:  May 20, 2024  1:54 PM
  Number of letters in database: 3,990
  Number of sequences in database:  17



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40