Comparative Genomics

ACIAD0509 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 76239307bfa0d600287cdb6c79871a23.SwissProt.fasta
           20 sequences; 2,782 total letters



Query= ACIAD0509

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0C7M0 Biopolymer transport protein exbD1 [Xanthomonas campestris...  82.4    1e-24
B0RLE7 Biopolymer transport protein exbD1 [Xanthomonas campestris...  82.4    1e-24
O06434 Biopolymer transport protein ExbD [Neisseria gonorrhoeae]      82.0    2e-24
P0A0R9 Biopolymer transport protein ExbD [Neisseria meningitidis ...  81.3    3e-24
P0A0R8 Biopolymer transport protein ExbD [Neisseria meningitidis ...  81.3    3e-24
P0A0S0 Biopolymer transport protein ExbD [Neisseria meningitidis ...  81.3    3e-24
P0ABV5 Biopolymer transport protein ExbD [Shigella flexneri]          80.9    4e-24
P0ABV3 Biopolymer transport protein ExbD [Escherichia coli O6:H1 ...  80.9    4e-24
P0ABV4 Biopolymer transport protein ExbD [Escherichia coli O157:H7]   80.9    4e-24
P0ABV2 Biopolymer transport protein ExbD [Escherichia coli (strai...  80.9    4e-24
Q9RMT1 Biopolymer transport protein ExbD [Pseudomonas aeruginosa ...  79.7    1e-23
P0C7I9 Biopolymer transport protein exbD2 [Xanthomonas campestris...  74.7    9e-22
B0RLE8 Biopolymer transport protein exbD2 [Xanthomonas campestris...  74.7    9e-22
P50599 Tol-Pal system protein TolR [Pseudomonas aeruginosa (strai...  69.7    1e-19
Q05606 Biopolymer transport protein ExbD [Pseudomonas putida]         66.2    2e-18
O67694 Biopolymer transport protein ExbD [Aquifex aeolicus (strai...  57.8    3e-15
P64101 Putative biopolymer transport protein ExbD-like 2 [Helicob...  55.5    2e-14
P64102 Putative biopolymer transport protein ExbD-like 2 [Helicob...  55.5    2e-14
P0ABV6 Tol-Pal system protein TolR [Escherichia coli (strain K12)]    49.7    4e-12
O51809 Biopolymer transport protein ExbD [Haemophilus ducreyi (st...  48.1    1e-11


>P0C7M0 Biopolymer transport protein exbD1 [Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 
/ LMG 568 / P 25)]
Length=140

 Score = 82.4 bits (202),  Expect = 1e-24
 Identities = 45/138 (33%), Positives = 77/138 (56%), Gaps = 10/138 (7%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLP------KTTAEI  54
            MAF  G      M ++N+ PL+D+MLVL+IIF++TA + +  V + LP      K  AE 
Sbjct  1    MAFSSGNS-GGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEK  59

Query  55   QPPPPKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVA  114
            +  P   IT+++  +G + W  E I+ + L+ R   A Q   +P + L+ D+ ++  T+ 
Sbjct  60   RAAP---ITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTIN  116

Query  115  QVMSRASGAGLSDIAFVS  132
            ++   A G G+ D+ FV+
Sbjct  117  EITKIAQGQGMLDVGFVA  134


>B0RLE7 Biopolymer transport protein exbD1 [Xanthomonas campestris 
pv. campestris (strain B100)]
Length=140

 Score = 82.4 bits (202),  Expect = 1e-24
 Identities = 45/138 (33%), Positives = 77/138 (56%), Gaps = 10/138 (7%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLP------KTTAEI  54
            MAF  G      M ++N+ PL+D+MLVL+IIF++TA + +  V + LP      K  AE 
Sbjct  1    MAFSSGNS-GGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEK  59

Query  55   QPPPPKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVA  114
            +  P   IT+++  +G + W  E I+ + L+ R   A Q   +P + L+ D+ ++  T+ 
Sbjct  60   RAAP---ITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTIN  116

Query  115  QVMSRASGAGLSDIAFVS  132
            ++   A G G+ D+ FV+
Sbjct  117  EITKIAQGQGMLDVGFVA  134


>O06434 Biopolymer transport protein ExbD [Neisseria gonorrhoeae]
Length=144

 Score = 82.0 bits (201),  Expect = 2e-24
 Identities = 48/140 (34%), Positives = 82/140 (59%), Gaps = 7/140 (5%)

Query  1    MAF-QLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTT--AEIQPP  57
            MAF  +    DS M+++N+ PL+D+MLVL+I+F++T  V   S+PL LP  +  A  Q  
Sbjct  1    MAFGSMNSSDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQANKQDK  60

Query  58   PPKE-ITISINSNGDVSWGQEA---ITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTV  113
             PK+ + ++I++NG    G ++   + + E++ R + A +  +   V + ADK   YD V
Sbjct  61   QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV  120

Query  114  AQVMSRASGAGLSDIAFVSE  133
             + +  A  AG++ I FV+E
Sbjct  121  NKALEAARQAGITKIGFVTE  140


>P0A0R9 Biopolymer transport protein ExbD [Neisseria meningitidis 
serogroup B (strain MC58)]
Length=144

 Score = 81.3 bits (199),  Expect = 3e-24
 Identities = 47/140 (34%), Positives = 82/140 (59%), Gaps = 7/140 (5%)

Query  1    MAF-QLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEI--QPP  57
            MAF  +    DS M+++N+ PL+D+MLVL+I+F++T  V   S+PL LP  + +   Q  
Sbjct  1    MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK  60

Query  58   PPKE-ITISINSNGDVSWGQEA---ITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTV  113
             PK+ + ++I++NG    G ++   + + E++ R + A +  +   V + ADK   YD V
Sbjct  61   QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV  120

Query  114  AQVMSRASGAGLSDIAFVSE  133
             + +  A  AG++ I FV+E
Sbjct  121  NKALEAARQAGITKIGFVTE  140


>P0A0R8 Biopolymer transport protein ExbD [Neisseria meningitidis 
serogroup A / serotype 4A (strain DSM 15465 / Z2491)]
Length=144

 Score = 81.3 bits (199),  Expect = 3e-24
 Identities = 47/140 (34%), Positives = 82/140 (59%), Gaps = 7/140 (5%)

Query  1    MAF-QLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEI--QPP  57
            MAF  +    DS M+++N+ PL+D+MLVL+I+F++T  V   S+PL LP  + +   Q  
Sbjct  1    MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK  60

Query  58   PPKE-ITISINSNGDVSWGQEA---ITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTV  113
             PK+ + ++I++NG    G ++   + + E++ R + A +  +   V + ADK   YD V
Sbjct  61   QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV  120

Query  114  AQVMSRASGAGLSDIAFVSE  133
             + +  A  AG++ I FV+E
Sbjct  121  NKALEAARQAGITKIGFVTE  140


>P0A0S0 Biopolymer transport protein ExbD [Neisseria meningitidis 
serogroup C]
Length=144

 Score = 81.3 bits (199),  Expect = 3e-24
 Identities = 47/140 (34%), Positives = 82/140 (59%), Gaps = 7/140 (5%)

Query  1    MAF-QLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEI--QPP  57
            MAF  +    DS M+++N+ PL+D+MLVL+I+F++T  V   S+PL LP  + +   Q  
Sbjct  1    MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK  60

Query  58   PPKE-ITISINSNGDVSWGQEA---ITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTV  113
             PK+ + ++I++NG    G ++   + + E++ R + A +  +   V + ADK   YD V
Sbjct  61   QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV  120

Query  114  AQVMSRASGAGLSDIAFVSE  133
             + +  A  AG++ I FV+E
Sbjct  121  NKALEAARQAGITKIGFVTE  140


>P0ABV5 Biopolymer transport protein ExbD [Shigella flexneri]
Length=141

 Score = 80.9 bits (198),  Expect = 4e-24
 Identities = 44/135 (33%), Positives = 74/135 (55%), Gaps = 2/135 (1%)

Query  1    MAFQLGEDHDSG--MNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPP  58
            MA  L E+ D    M+++N+ P ID+MLVL+IIF+V A +A   V ++LP +T+  QP P
Sbjct  1    MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP  60

Query  59   PKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMS  118
             K + +S+ ++  +  G + +T + +        +  +  T+  +ADK   Y+T+ +VM 
Sbjct  61   EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD  120

Query  119  RASGAGLSDIAFVSE  133
                AG   I  V E
Sbjct  121  TLHQAGYLKIGLVGE  135


>P0ABV3 Biopolymer transport protein ExbD [Escherichia coli O6:H1 
(strain CFT073 / ATCC 700928 / UPEC)]
Length=141

 Score = 80.9 bits (198),  Expect = 4e-24
 Identities = 44/135 (33%), Positives = 74/135 (55%), Gaps = 2/135 (1%)

Query  1    MAFQLGEDHDSG--MNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPP  58
            MA  L E+ D    M+++N+ P ID+MLVL+IIF+V A +A   V ++LP +T+  QP P
Sbjct  1    MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP  60

Query  59   PKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMS  118
             K + +S+ ++  +  G + +T + +        +  +  T+  +ADK   Y+T+ +VM 
Sbjct  61   EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD  120

Query  119  RASGAGLSDIAFVSE  133
                AG   I  V E
Sbjct  121  TLHQAGYLKIGLVGE  135


>P0ABV4 Biopolymer transport protein ExbD [Escherichia coli O157:H7]
Length=141

 Score = 80.9 bits (198),  Expect = 4e-24
 Identities = 44/135 (33%), Positives = 74/135 (55%), Gaps = 2/135 (1%)

Query  1    MAFQLGEDHDSG--MNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPP  58
            MA  L E+ D    M+++N+ P ID+MLVL+IIF+V A +A   V ++LP +T+  QP P
Sbjct  1    MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP  60

Query  59   PKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMS  118
             K + +S+ ++  +  G + +T + +        +  +  T+  +ADK   Y+T+ +VM 
Sbjct  61   EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD  120

Query  119  RASGAGLSDIAFVSE  133
                AG   I  V E
Sbjct  121  TLHQAGYLKIGLVGE  135


>P0ABV2 Biopolymer transport protein ExbD [Escherichia coli (strain 
K12)]
Length=141

 Score = 80.9 bits (198),  Expect = 4e-24
 Identities = 44/135 (33%), Positives = 74/135 (55%), Gaps = 2/135 (1%)

Query  1    MAFQLGEDHDSG--MNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPP  58
            MA  L E+ D    M+++N+ P ID+MLVL+IIF+V A +A   V ++LP +T+  QP P
Sbjct  1    MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP  60

Query  59   PKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMS  118
             K + +S+ ++  +  G + +T + +        +  +  T+  +ADK   Y+T+ +VM 
Sbjct  61   EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD  120

Query  119  RASGAGLSDIAFVSE  133
                AG   I  V E
Sbjct  121  TLHQAGYLKIGLVGE  135


>Q9RMT1 Biopolymer transport protein ExbD [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=133

 Score = 79.7 bits (195),  Expect = 1e-23
 Identities = 42/132 (32%), Positives = 76/132 (58%), Gaps = 1/132 (1%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPK  60
            MAF   +D D  ++E+N+ PL+D+MLVL+++F+VTA +   S+P++LPKT +   P    
Sbjct  1    MAFST-QDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPINLPKTESVAPPEQKD  59

Query  61   EITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRA  120
             + +SI+  G +   ++ I  + L+     A     +  V L+AD+   Y  VA+ M+  
Sbjct  60   PLVVSIDGAGKLFVNKDEIQPELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASI  119

Query  121  SGAGLSDIAFVS  132
              AG++ +A ++
Sbjct  120  ERAGITRLAVIT  131


>P0C7I9 Biopolymer transport protein exbD2 [Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 
/ LMG 568 / P 25)]
Length=136

 Score = 74.7 bits (182),  Expect = 9e-22
 Identities = 40/136 (29%), Positives = 77/136 (57%), Gaps = 6/136 (4%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQP---P  57
            MAF  G +    M ++N+ PL+D+MLVL+IIF+VTA +    + + LP+      P    
Sbjct  1    MAFSTGGNRGP-MADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPQTTE  59

Query  58   PPKEITISINSNGDVSWGQEAITLDELQKRFQEAGQS--AQKPTVMLKADKESRYDTVAQ  115
            PP  I + I+++  V W      + +LQ++ +E  Q+    +P + + A++++ Y+ +A+
Sbjct  60   PPPPIELRIDASNQVFWNNSPTPVAQLQQKMEEVVQADPTNQPELRIDANEDAEYEVMAK  119

Query  116  VMSRASGAGLSDIAFV  131
            V++ A  + +  I F+
Sbjct  120  VLAAAKNSQMKKIGFM  135


>B0RLE8 Biopolymer transport protein exbD2 [Xanthomonas campestris 
pv. campestris (strain B100)]
Length=136

 Score = 74.7 bits (182),  Expect = 9e-22
 Identities = 40/136 (29%), Positives = 77/136 (57%), Gaps = 6/136 (4%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQP---P  57
            MAF  G +    M ++N+ PL+D+MLVL+IIF+VTA +    + + LP+      P    
Sbjct  1    MAFSTGGNRGP-MADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPQTTE  59

Query  58   PPKEITISINSNGDVSWGQEAITLDELQKRFQEAGQS--AQKPTVMLKADKESRYDTVAQ  115
            PP  I + I+++  V W      + +LQ++ +E  Q+    +P + + A++++ Y+ +A+
Sbjct  60   PPPPIELRIDASNQVFWNNSPTPVAQLQQKMEEVVQADPTNQPELRIDANEDAEYEVMAK  119

Query  116  VMSRASGAGLSDIAFV  131
            V++ A  + +  I F+
Sbjct  120  VLAAAKNSQMKKIGFM  135


>P50599 Tol-Pal system protein TolR [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 
12228 / 1C / PRS 101 / PAO1)]
Length=146

 Score = 69.7 bits (169),  Expect = 1e-19
 Identities = 37/132 (28%), Positives = 67/132 (51%), Gaps = 13/132 (10%)

Query  15   EMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPKE--ITISINSNGDV  72
            EMN++P ID+MLVL++IF+VTA + N  V + LPK ++E  P    +  +T+S+ ++G  
Sbjct  13   EMNVVPYIDVMLVLLVIFMVTAPMLNQGVKVDLPKVSSEALPQDNNKQVLTLSVKADGSY  72

Query  73   SWG-----------QEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRAS  121
             W              A++L+++     +   +     V ++ DK   Y  V   M    
Sbjct  73   YWNVGSEVDTEKQTDSAVSLEQMTDAVTKIMSARPDTQVFIRGDKAVNYGAVVGAMGALQ  132

Query  122  GAGLSDIAFVSE  133
             AG+ ++  ++E
Sbjct  133  QAGVPNVGLITE  144


>Q05606 Biopolymer transport protein ExbD [Pseudomonas putida]
Length=142

 Score = 66.2 bits (160),  Expect = 2e-18
 Identities = 37/127 (29%), Positives = 67/127 (53%), Gaps = 1/127 (1%)

Query  6    GEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPKEITIS  65
            G D  +  +E+N+ P ID+MLVL+IIF+V A +A   + + LP +TA+  P P K + +S
Sbjct  8    GGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPRPEKPVFVS  67

Query  66   INSNGDVSWGQEAITLD-ELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAG  124
            + ++  +  G + +    +L        +  ++ T+  +ADK   Y  + +VM+    AG
Sbjct  68   VKADQKLYVGDDQVPAPAQLGAMLDAKTKGDKETTIFFQADKGVDYGDLMEVMNNMRAAG  127

Query  125  LSDIAFV  131
               +  V
Sbjct  128  YLKVGLV  134


>O67694 Biopolymer transport protein ExbD [Aquifex aeolicus (strain 
VF5)]
Length=132

 Score = 57.8 bits (138),  Expect = 3e-15
 Identities = 34/117 (29%), Positives = 63/117 (54%), Gaps = 4/117 (3%)

Query  13   MNEMNLIPLIDIMLVLMIIFLVTAT-VANPSVPLSLPKTTAEIQPPPPKEITISINSNGD  71
            ++ MN+IPL+DIMLVL+ I L TAT +A   +P+ LP+  +     P + + I+I   G 
Sbjct  12   ISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQESVVITITKEGK  71

Query  72   VSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSDI  128
            +      ++ +EL++  +   +  Q P V + ADK ++ +   +V    +  G  ++
Sbjct  72   IYLKSREVSYEELKEFLKTLNR--QTP-VEINADKNAKLENFVKVFDLLNQYGFKNV  125


>P64101 Putative biopolymer transport protein ExbD-like 2 [Helicobacter 
pylori (strain ATCC 700392 / 26695)]
Length=133

 Score = 55.5 bits (132),  Expect = 2e-14
 Identities = 35/127 (28%), Positives = 67/127 (53%), Gaps = 8/127 (6%)

Query  13   MNEMNLIPLIDIMLVLMIIFLVTAT-VANPSVPLSLPK----TTAEIQPPPPKEITISIN  67
            +  MN++P IDIMLVL++I L TA+ V    +P+S+P+    +T        K++TI+I+
Sbjct  4    VESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTIAIS  63

Query  68   SNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSD  127
            + G   +  + I+ + L+    +    A+   ++L+ DK+S  D   +V+       L  
Sbjct  64   NKGSFYFDDKEISFENLK---HKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQ  120

Query  128  IAFVSEN  134
            +  + E+
Sbjct  121  LYILVED  127


>P64102 Putative biopolymer transport protein ExbD-like 2 [Helicobacter 
pylori (strain J99 / ATCC 700824)]
Length=133

 Score = 55.5 bits (132),  Expect = 2e-14
 Identities = 35/127 (28%), Positives = 67/127 (53%), Gaps = 8/127 (6%)

Query  13   MNEMNLIPLIDIMLVLMIIFLVTAT-VANPSVPLSLPK----TTAEIQPPPPKEITISIN  67
            +  MN++P IDIMLVL++I L TA+ V    +P+S+P+    +T        K++TI+I+
Sbjct  4    VESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTIAIS  63

Query  68   SNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSD  127
            + G   +  + I+ + L+    +    A+   ++L+ DK+S  D   +V+       L  
Sbjct  64   NKGSFYFDDKEISFENLK---HKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQ  120

Query  128  IAFVSEN  134
            +  + E+
Sbjct  121  LYILVED  127


>P0ABV6 Tol-Pal system protein TolR [Escherichia coli (strain 
K12)]
Length=142

 Score = 49.7 bits (117),  Expect = 4e-12
 Identities = 32/140 (23%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query  1    MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAE--IQPPP  58
            MA   G       +E+N++PL+D++LVL++IF+ TA +   SV + LP  T    +    
Sbjct  1    MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSND  60

Query  59   PKEITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQ-----KPTVMLKADKESRYDTV  113
               + + ++  G  +   E   L+ L      A  S++     K   ++   K+  YD +
Sbjct  61   NPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKANPKTVFLIGGAKDVPYDEI  120

Query  114  AQVMSRASGAGLSDIAFVSE  133
             + ++    AG+  +  +++
Sbjct  121  IKALNLLHSAGVKSVGLMTQ  140


>O51809 Biopolymer transport protein ExbD [Haemophilus ducreyi 
(strain 35000HP / ATCC 700724)]
Length=129

 Score = 48.1 bits (113),  Expect = 1e-11
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query  14   NEMNLIPLIDIMLVLMIIFLVTAT-VANPSVPLSLPK-TTAEIQPPPPKEITISINSNGD  71
            +E+N+IP IDIMLVL+ I LVTA+ ++   + +++PK TT +          ++I  N  
Sbjct  5    DEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKATTTQAMKADELAKLLTITENNG  64

Query  72   VSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSDIAFV  131
              +  + IT ++L     E     +   V LK D    ++   ++    S   + ++A V
Sbjct  65   FYFNDKLITKEDLS---TEIASWDKTQKVTLKVDSAVAFEKFVELTDLLSANEIKNVAIV  121

Query  132  SE  133
            ++
Sbjct  122  TK  123



Lambda      K        H        a         alpha
   0.318    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212302


  Database: 76239307bfa0d600287cdb6c79871a23.SwissProt.fasta
    Posted date:  Jun 1, 2024  7:38 PM
  Number of letters in database: 2,782
  Number of sequences in database:  20



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40