BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1392f50685054197de06db0d06fe1971.SwissProt.fasta
11 sequences; 3,240 total letters
Query= ACIAD0641
Length=362
Score E
Sequences producing significant alignments: (Bits) Value
P72171 Ornithine utilization regulator [Pseudomonas aeruginosa (s... 84.0 1e-21
P9WMJ2 HTH-type transcriptional regulator VirS [Mycobacterium tub... 67.4 5e-16
P9WMJ3 HTH-type transcriptional regulator VirS [Mycobacterium tub... 67.4 5e-16
Q9I1P2 HTH-type transcriptional regulator VqsM [Pseudomonas aerug... 58.2 5e-13
P23774 987P fimbrial operon positive regulatory protein FapR [Esc... 52.8 2e-11
P10805 Porin thermoregulatory protein EnvY [Escherichia coli (str... 52.4 3e-11
P16114 Regulatory protein Rns [Escherichia coli] 48.5 5e-10
P25393 CFA/I fimbrial subunit D [Escherichia coli] 46.2 3e-09
P43459 Transcriptional activator PerA [Escherichia coli O127:H6 (... 43.5 2e-08
Q00753 Msm operon regulatory protein [Streptococcus mutans seroty... 40.0 3e-07
>P72171 Ornithine utilization regulator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=339
Score = 84.0 bits (206), Expect = 1e-21
Identities = 76/295 (26%), Positives = 127/295 (43%), Gaps = 25/295 (8%)
Query 71 YTQLLKQVQSTLSRP-VSLVLAEHATLQDVGLIGYLASTSLNLQQALSLLEQYYPLIFKQ 129
+ QL Q+ P + LVL + + G++GY +S NL +A+ +YY ++
Sbjct 57 FNQLTYSAQALCGEPALGLVLGQRLNVSAHGILGYAVLSSANLGKAIQFALKYYRVLGLA 116
Query 130 TNLE--------QLKIVEQQDLIQISWGALYEDYREMYELNQALIFKIAQAIIQQHLIPP 181
LE +L+ VE L S A E A ++ IA ++ + L
Sbjct 117 YELELVLDDGRAELRAVESMPLGAASVFAA--------EGLMATLYSIACFLVGEPL-QD 167
Query 182 VFIQLGHVPNFSISYYAQFYGCDVTIREGQYCIGFSKQILRARSFAADQHLNQMLSSQAK 241
V + + P YA+ +G + + + + L A+ QM Q +
Sbjct 168 VRVGFAYPPPAHARRYAEVFGVAAEFEQPWHWLSMPSEYLERPMALANPATVQMCEQQCE 227
Query 242 QSLQHADTFEHRQQQFKQKVMGLIEQGLRHQNEVIQHYVAKQLHASERTLQRQLKQYQLN 301
L D E + ++ ++ R + A++LH S R+L+R L
Sbjct 228 ALLATLDVQEGLLTRVRRLLLA------RPGDFPDLEQAARELHTSGRSLRRHLSSLGTT 281
Query 302 FQDILDEFRLQQSQLYLKQGRA-LTEIAELLGYADQSAFGRAFKRWTGRTPKNYR 355
+Q +LD+ R + + YL + L EIA LLG+ D S F RAF++WTG+ P +YR
Sbjct 282 YQQVLDDVRKRLALQYLTTTQLPLYEIALLLGFNDSSNFRRAFRKWTGKLPSDYR 336
>P9WMJ2 HTH-type transcriptional regulator VirS [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=340
Score = 67.4 bits (163), Expect = 5e-16
Identities = 53/163 (33%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query 197 YAQFYGCDVTIREGQYCIGFS-KQILRARSFA-ADQHLNQMLSSQAKQSLQHADTFEHRQ 254
Y + GC T+R G+ GF L R AD ++ + + +D
Sbjct 180 YREALGC--TVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDA----- 232
Query 255 QQFKQKVMGLIEQGLRHQNEVIQHYVAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQS 314
++V+GL + L + +A QL RTLQR+L L D+++ R Q+
Sbjct 233 -TLSERVVGLARR-LLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQA 290
Query 315 QLYLKQ-GRALTEIAELLGYADQSAFGRAFKRWTGRTPKNYRA 356
YL Q G L++IA LLGY++QSA R+ +RW G TP+ YRA
Sbjct 291 ARYLAQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
>P9WMJ3 HTH-type transcriptional regulator VirS [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=340
Score = 67.4 bits (163), Expect = 5e-16
Identities = 53/163 (33%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query 197 YAQFYGCDVTIREGQYCIGFS-KQILRARSFA-ADQHLNQMLSSQAKQSLQHADTFEHRQ 254
Y + GC T+R G+ GF L R AD ++ + + +D
Sbjct 180 YREALGC--TVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDA----- 232
Query 255 QQFKQKVMGLIEQGLRHQNEVIQHYVAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQS 314
++V+GL + L + +A QL RTLQR+L L D+++ R Q+
Sbjct 233 -TLSERVVGLARR-LLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQA 290
Query 315 QLYLKQ-GRALTEIAELLGYADQSAFGRAFKRWTGRTPKNYRA 356
YL Q G L++IA LLGY++QSA R+ +RW G TP+ YRA
Sbjct 291 ARYLAQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
>Q9I1P2 HTH-type transcriptional regulator VqsM [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=325
Score = 58.2 bits (139), Expect = 5e-13
Identities = 71/291 (24%), Positives = 127/291 (44%), Gaps = 38/291 (13%)
Query 88 LVLAEHATLQDVGLIGYLASTSLNLQQALSLLEQYYPLIFKQTNLEQLKIVEQQDL---I 144
L L + + D G+IG + N+ L ++ Y L + +K E ++ I
Sbjct 54 LNLGTYYHISDYGVIGLALLCAENVGDILKVIRAYVKLFNRDIANVGVKPRENYEVEIHI 113
Query 145 QISWGALYEDYREMYELNQALIFKIAQAIIQQHLIPPVFIQLGHVPNFSISYYA-QFYGC 203
+++ + D + +N +I + LG+ +F IS +G
Sbjct 114 SVNFKPEWNDASRQFHVN----------VIASATYKLIMDLLGN--DFPISALTVPVHGA 161
Query 204 DVTIREGQYCIGFSKQ---ILRARSFAADQHLNQMLSSQAKQSLQHADTFEHRQQQFKQK 260
D TI EG + + + I+ SF A Q LN+ L++ Q A T +
Sbjct 162 DKTIYEGFFSLPVKHEGNDIIF--SFPAHQ-LNRTLATANPAVFQSALTMAGESFNALLE 218
Query 261 V-MGLIEQGLRHQNEVIQHYV----------AKQLHASERTLQRQLKQYQLNFQDILDEF 309
V MG GLR + E+ + AK L +ERT++R+L ++ I+D+
Sbjct 219 VEMG----GLRQRIELFLDSIPDQYPSLVTTAKYLRMNERTVRRRLADEGCTYRQIVDKA 274
Query 310 RLQQS-QLYLKQGRALTEIAELLGYADQSAFGRAFKRWTGRTPKNYRADLH 359
R +++ L L + I+++LGY++ ++F AF+RWTG++ +R H
Sbjct 275 RKERAIALLLNSSIPVDRISDILGYSETASFRHAFRRWTGQSTTEFRNSFH 325
>P23774 987P fimbrial operon positive regulatory protein FapR
[Escherichia coli]
Length=260
Score = 52.8 bits (125), Expect = 2e-11
Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query 226 FAADQHLNQMLSSQAKQSLQHADTFEHRQQQFKQKVMGLIEQGLRHQNEVIQHYVAKQLH 285
F A L ++S S+ F F ++++ L+ L + ++ +A+++H
Sbjct 121 FTAIYELAFLVSKCENPSMFAISLFSSVAVTFSERIVTLLFSDLTRKWKLSD--IAEEMH 178
Query 286 ASERTLQRQLKQYQLNFQDILDEFRLQQSQLYL-KQGRALTEIAELLGYADQSAFGRAFK 344
SE +++++L+Q LNF ++ + R+ Q+ ++ + + IA L+GY S F + FK
Sbjct 179 ISEISVRKRLEQECLNFNQLILDVRMNQAAKFIIRSDHQIGMIASLVGYTSVSYFIKTFK 238
Query 345 RWTGRTPKNYRADLHQD 361
+ G TPK + + ++
Sbjct 239 EYYGVTPKKFEIGIKEN 255
>P10805 Porin thermoregulatory protein EnvY [Escherichia coli
(strain K12)]
Length=253
Score = 52.4 bits (124), Expect = 3e-11
Identities = 32/91 (35%), Positives = 49/91 (54%), Gaps = 6/91 (7%)
Query 276 IQHY-----VAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQS-QLYLKQGRALTEIAE 329
IQHY VA L S L+++LK ++ I+ E R++ + Q+ L + +T++A+
Sbjct 159 IQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ 218
Query 330 LLGYADQSAFGRAFKRWTGRTPKNYRADLHQ 360
L GY+ S F FK + G TP NY A Q
Sbjct 219 LCGYSSTSYFISVFKAFYGLTPLNYLAKQRQ 249
>P16114 Regulatory protein Rns [Escherichia coli]
Length=265
Score = 48.5 bits (114), Expect = 5e-10
Identities = 30/99 (30%), Positives = 54/99 (55%), Gaps = 3/99 (3%)
Query 257 FKQKVMGLIEQGLRHQNEVIQHYVAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQSQ- 315
F KV LIE+ L + + +A +ASE T++++L+ NF IL + R+ ++
Sbjct 162 FSDKVRNLIEKDLSRKWTL--GIIADAFNASEITIRKRLESENTNFNQILMQLRMSKAAL 219
Query 316 LYLKQGRALTEIAELLGYADQSAFGRAFKRWTGRTPKNY 354
L L+ +++I+ ++G + S F R F + G TPK +
Sbjct 220 LLLENSYQISQISNMIGISSASYFIRIFNKHYGVTPKQF 258
>P25393 CFA/I fimbrial subunit D [Escherichia coli]
Length=265
Score = 46.2 bits (108), Expect = 3e-09
Identities = 28/99 (28%), Positives = 53/99 (54%), Gaps = 3/99 (3%)
Query 257 FKQKVMGLIEQGLRHQNEVIQHYVAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQSQL 316
F KV +IE+ L + + +A + SE T++++L+ NF IL + R+ ++ L
Sbjct 162 FSDKVRNVIEKDLSRKWTL--GIIADAFNVSEITIRKRLESENTNFNQILMQLRMSKAAL 219
Query 317 YLKQGR-ALTEIAELLGYADQSAFGRAFKRWTGRTPKNY 354
L + +++I+ ++G + S F R F + G TPK +
Sbjct 220 LLLENSYQISQISNMIGISSASYFIRVFNKHYGVTPKQF 258
>P43459 Transcriptional activator PerA [Escherichia coli O127:H6
(strain E2348/69 / EPEC)]
Length=274
Score = 43.5 bits (101), Expect = 2e-08
Identities = 22/76 (29%), Positives = 44/76 (58%), Gaps = 1/76 (1%)
Query 280 VAKQLHASERTLQRQLKQYQLNFQDILDEFRLQQSQLYLKQ-GRALTEIAELLGYADQSA 338
V+ + S+ L++QL + L F+ I+ + +++ + L+L+ + + EI+ L+G+ S
Sbjct 187 VSSSMFMSDSCLRKQLNKENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSY 246
Query 339 FGRAFKRWTGRTPKNY 354
F + FK + TPK Y
Sbjct 247 FIKVFKEYYNTTPKKY 262
>Q00753 Msm operon regulatory protein [Streptococcus mutans serotype
c (strain ATCC 700610 / UA159)]
Length=278
Score = 40.0 bits (92), Expect = 3e-07
Identities = 46/202 (23%), Positives = 84/202 (42%), Gaps = 40/202 (20%)
Query 200 FYGCDVTIREGQYCIGFS--------KQILRARSFAADQHLNQMLSSQAKQSLQHADTFE 251
FY D+ + IGFS KQ + F + L SQ +Q A+T
Sbjct 77 FYQADLQMPWSYIWIGFSGSKAENILKQSSLFKRFYCHSGRSSKLFSQMMTIIQFANTPL 136
Query 252 HRQQ------QFKQKVMGLIEQ----GLRHQNEVIQHYV--------------------A 281
+ + + LIE+ L N + YV A
Sbjct 137 TSVNELLMVGELYKLLAALIEEFPLSHLEESNSSTKAYVNQVKKIIHSQYGSSLRVNDIA 196
Query 282 KQLHASERTLQRQL-KQYQLNFQDILDEFRLQQSQLYLKQGR-ALTEIAELLGYADQSAF 339
K+L+ S L + K L+ ++ + + R+++SQ L+ + ++ EI+ +G++D AF
Sbjct 197 KKLNLSRSYLYKIFRKSTNLSIKEYILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAF 256
Query 340 GRAFKRWTGRTPKNYRADLHQD 361
+AFK + G++P +R ++ +
Sbjct 257 SKAFKNYFGKSPSKFRKEIQNN 278
Score = 18.5 bits (36), Expect = 2.4
Identities = 7/22 (32%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 102 IGYLASTSLNLQQALSLLEQYY 123
IG+ S + N+ + SL +++Y
Sbjct 91 IGFSGSKAENILKQSSLFKRFY 112
Score = 16.9 bits (32), Expect = 7.5
Identities = 5/12 (42%), Positives = 7/12 (58%), Gaps = 0/12 (0%)
Query 44 QKAWADYWLQFS 55
Q W+ W+ FS
Sbjct 83 QMPWSYIWIGFS 94
Lambda K H a alpha
0.326 0.137 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 876408
Database: 1392f50685054197de06db0d06fe1971.SwissProt.fasta
Posted date: May 20, 2024 1:54 PM
Number of letters in database: 3,240
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
