BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6ff2604136f5252ab2ff1b15412ab3b8.SwissProt.fasta
14 sequences; 4,824 total letters
Query= ACIAD0653
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
P07021 Putative lipoprotein YfiB [Escherichia coli (strain K12)] 84.7 8e-25
Q05146 Outer membrane protein A [Bordetella avium] 82.8 9e-24
P37726 Outer membrane porin F [Pseudomonas fluorescens] 78.6 3e-21
P37665 Probable lipoprotein YiaD [Escherichia coli (strain K12)] 76.3 5e-21
Q7NFT5 Photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacte... 71.2 2e-18
P22263 Outer membrane porin F [Pseudomonas syringae pv. syringae] 68.9 8e-18
P13794 Outer membrane porin F [Pseudomonas aeruginosa (strain ATC... 67.8 2e-17
A3M8K2 Outer membrane protein Omp38 [Acinetobacter baumannii (str... 67.8 2e-17
Q6RYW5 Outer membrane protein Omp38 [Acinetobacter baumannii (str... 67.8 2e-17
P9WIU4 Peptidoglycan-binding protein ArfA [Mycobacterium tubercul... 67.0 4e-17
P65594 Peptidoglycan-binding protein ArfA [Mycobacterium bovis (s... 67.0 4e-17
P9WIU5 Peptidoglycan-binding protein ArfA [Mycobacterium tubercul... 67.0 4e-17
A1KH31 Peptidoglycan-binding protein ArfA [Mycobacterium bovis (s... 67.0 4e-17
A0A160PAH3 Outer membrane protein Omp38 [Acinetobacter sp. (strai... 65.1 2e-16
>P07021 Putative lipoprotein YfiB [Escherichia coli (strain K12)]
Length=160
Score = 84.7 bits (208), Expect = 8e-25
Identities = 54/144 (38%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query 16 LILAGCLS-FGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFDKSEVNPAHQQEIIR 74
LIL GC S G +QV +Q GF ++ W+LGL + +LF + ++ P QQ+I
Sbjct 14 LILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQT 73
Query 75 LANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINNSFTP-NHIQIIGRG 133
+A +L GL ++ G+TDN G YN LS RA VA + P +++ G G
Sbjct 74 MAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLG 133
Query 134 SNQPLLPNTTEENRAANRRVAIVI 157
P+ N T + RA NRRVA+VI
Sbjct 134 KKYPIASNKTAQGRAENRRVAVVI 157
>Q05146 Outer membrane protein A [Bordetella avium]
Length=194
Score = 82.8 bits (203), Expect = 9e-24
Identities = 44/102 (43%), Positives = 58/102 (57%), Gaps = 0/102 (0%)
Query 57 FEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAI 116
F+FDKS + P +Q + ++A Q L + VG TD+IG YN+KLS+ RA SV A
Sbjct 89 FDFDKSTLKPEGRQLLDQVAQQARAIDLETIIAVGNTDSIGTEAYNMKLSERRAASVKAY 148
Query 117 FINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIV 158
++ PN I G+G P+ N T E RA NRRV I IV
Sbjct 149 LVSKGIDPNRIYTEGKGKLNPIASNKTAEGRARNRRVEIEIV 190
>P37726 Outer membrane porin F [Pseudomonas fluorescens]
Length=326
Score = 78.6 bits (192), Expect = 3e-21
Identities = 39/97 (40%), Positives = 57/97 (59%), Gaps = 0/97 (0%)
Query 57 FEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAI 116
F+FDKS V P ++ LA+ + +Y ++V G+TD+IG YN KLSQ RA V +
Sbjct 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSIGPDAYNQKLSQRRADRVKQV 280
Query 117 FINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRV 153
+ + P+ I +G G ++P+ N TE RA NRRV
Sbjct 281 LVKDGVAPSRITAVGYGESRPVADNATEAGRAVNRRV 317
>P37665 Probable lipoprotein YiaD [Escherichia coli (strain K12)]
Length=219
Score = 76.3 bits (186), Expect = 5e-21
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 0/111 (0%)
Query 49 LGLPERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQA 108
L +P + F+ + + PA + +A L +Y + V+GYTD+ G D N++LSQ
Sbjct 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQ 167
Query 109 RAQSVAAIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP 159
RA SVA+ I + I+ G G P+ N+T E +A NRRV I + P
Sbjct 168 RADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP 218
>Q7NFT5 Photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacter
violaceus (strain ATCC 29082 / PCC 7421)]
Length=872
Score = 71.2 bits (173), Expect = 2e-18
Identities = 40/118 (34%), Positives = 60/118 (51%), Gaps = 6/118 (5%)
Query 46 GWTLGLPERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKL 105
G L LPE ++F+FDKS V + R+ + YG ++++G+TD++G YN KL
Sbjct 747 GVMLLLPENIVFDFDKSSVKLDADPALNRVVGVIQFYGSEPVEILGHTDSLGEDAYNQKL 806
Query 106 SQARAQSVAAIFINNSFTPNHIQIIGRGSNQPLLPNT------TEENRAANRRVAIVI 157
S+ RA +V A F + G G +P+ PN + R NRRV I+I
Sbjct 807 SEERASAVKAFFEKKGIEAERLTAKGYGETKPVAPNAKPDGSDNPDGRQQNRRVEILI 864
>P22263 Outer membrane porin F [Pseudomonas syringae pv. syringae]
Length=344
Score = 68.9 bits (167), Expect = 8e-18
Identities = 37/98 (38%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query 57 FEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAI 116
F+FDKS V P +I LA+ + +Y V G+TD++G YN KLS+ RA +V +
Sbjct 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRANAVKQV 297
Query 117 FINN-SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRV 153
+N + + +G G ++P+ N TE RA NRRV
Sbjct 298 LVNQYGVGASRVNSVGYGESKPVADNATEAGRAVNRRV 335
>P13794 Outer membrane porin F [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=350
Score = 67.8 bits (164), Expect = 2e-17
Identities = 36/98 (37%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query 57 FEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAI 116
F+FDKS+V +I LA+ + +Y V G+TD++G YN KLS+ RA +V +
Sbjct 244 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSVGTDAYNQKLSERRANAVRDV 303
Query 117 FINN-SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRV 153
+N + +G G ++P+ N T E RA NRRV
Sbjct 304 LVNEYGVEGGRVNAVGYGESRPVADNATAEGRAINRRV 341
>A3M8K2 Outer membrane protein Omp38 [Acinetobacter baumannii
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)]
Length=356
Score = 67.8 bits (164), Expect = 2e-17
Identities = 38/110 (35%), Positives = 62/110 (56%), Gaps = 1/110 (1%)
Query 49 LGLPERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQA 108
L + R+ F+ +KS + ++ EI ++A +L++Y ++ G+TDN G R N +LS A
Sbjct 226 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLA 285
Query 109 RAQSVAAIFINN-SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
RA SV + +N + + + G +QP+ N T+E RA NRRV I
Sbjct 286 RANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATI 335
>Q6RYW5 Outer membrane protein Omp38 [Acinetobacter baumannii
(strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP
70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)]
Length=356
Score = 67.8 bits (164), Expect = 2e-17
Identities = 38/110 (35%), Positives = 62/110 (56%), Gaps = 1/110 (1%)
Query 49 LGLPERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQA 108
L + R+ F+ +KS + ++ EI ++A +L++Y ++ G+TDN G R N +LS A
Sbjct 226 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLA 285
Query 109 RAQSVAAIFINN-SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
RA SV + +N + + + G +QP+ N T+E RA NRRV I
Sbjct 286 RANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATI 335
>P9WIU4 Peptidoglycan-binding protein ArfA [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=326
Score = 67.0 bits (162), Expect = 4e-17
Identities = 37/103 (36%), Positives = 56/103 (54%), Gaps = 0/103 (0%)
Query 55 LLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVA 114
+ F D + + PA + + R+A++L ++ + GYTDN G+ N+ LS RA+ VA
Sbjct 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
Query 115 AIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
+ +HI +G GS P+ N T E RA NRRV IV+
Sbjct 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>P65594 Peptidoglycan-binding protein ArfA [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=326
Score = 67.0 bits (162), Expect = 4e-17
Identities = 37/103 (36%), Positives = 56/103 (54%), Gaps = 0/103 (0%)
Query 55 LLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVA 114
+ F D + + PA + + R+A++L ++ + GYTDN G+ N+ LS RA+ VA
Sbjct 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
Query 115 AIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
+ +HI +G GS P+ N T E RA NRRV IV+
Sbjct 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>P9WIU5 Peptidoglycan-binding protein ArfA [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=326
Score = 67.0 bits (162), Expect = 4e-17
Identities = 37/103 (36%), Positives = 56/103 (54%), Gaps = 0/103 (0%)
Query 55 LLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVA 114
+ F D + + PA + + R+A++L ++ + GYTDN G+ N+ LS RA+ VA
Sbjct 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
Query 115 AIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
+ +HI +G GS P+ N T E RA NRRV IV+
Sbjct 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>A1KH31 Peptidoglycan-binding protein ArfA [Mycobacterium bovis
(strain BCG / Pasteur 1173P2)]
Length=326
Score = 67.0 bits (162), Expect = 4e-17
Identities = 37/103 (36%), Positives = 56/103 (54%), Gaps = 0/103 (0%)
Query 55 LLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVA 114
+ F D + + PA + + R+A++L ++ + GYTDN G+ N+ LS RA+ VA
Sbjct 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
Query 115 AIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
+ +HI +G GS P+ N T E RA NRRV IV+
Sbjct 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>A0A160PAH3 Outer membrane protein Omp38 [Acinetobacter sp. (strain
Tol 5)]
Length=343
Score = 65.1 bits (157), Expect = 2e-16
Identities = 36/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (1%)
Query 49 LGLPERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQA 108
L + R+ F+ +KS + ++ E+ ++A+ LN + ++ G+TDN G R N +LS A
Sbjct 226 LNMELRVFFDTNKSNIKDQYKPEVAKVADALNTFPNATARIEGHTDNTGPRKLNERLSLA 285
Query 109 RAQSVAAIFINN-SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVI 157
RA SV + ++ + + + G +QP+ N T+E RA NRRV I
Sbjct 286 RANSVKSALVSEYNIDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATI 335
Lambda K H a alpha
0.324 0.140 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 511680
Database: 6ff2604136f5252ab2ff1b15412ab3b8.SwissProt.fasta
Posted date: May 31, 2024 10:35 AM
Number of letters in database: 4,824
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
