BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: aaa91621b9ad6a663e83f7a27dc76a8a.SwissProt.fasta
           1 sequences; 147 total letters



Query= ACIAD0693

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P16681 Protein YjdN [Escherichia coli (strain K12)]                   68.9    2e-20


>P16681 Protein YjdN [Escherichia coli (strain K12)]
Length=147

 Score = 68.9 bits (167),  Expect = 2e-20
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 4/142 (3%)

Query  1    MQLNHYLNFEGETEAAFIFYQSVFGGEFSILTRYGDLPSEDGVVYSEQQKSWVLHVSLPI  60
            M L+ YL+F G    A  +YQ   G E      +G++P +     +E   S +      I
Sbjct  1    MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMP-KSAQDSAENCPSGMQFPDTAI  59

Query  61   NEFTV-LMGSDVHEQFCSPHPLGLNKGNNHYISINLEDETEARRLFNQLSAGGHIEMQLQ  119
                V + GSD+        P G    +   + ++ +   E +R F+ L+A G IEM  Q
Sbjct  60   AHANVRIAGSDI--MMSDAMPSGKASYSGFTLVLDSQQVEEGKRWFDNLAANGKIEMAWQ  117

Query  120  KTFWGALYGAFTDQFGIKWMVN  141
            +TFW   +G  TD+FG+ WM+N
Sbjct  118  ETFWAHGFGKVTDKFGVPWMIN  139



Lambda      K        H        a         alpha
   0.324    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 17423


  Database: aaa91621b9ad6a663e83f7a27dc76a8a.SwissProt.fasta
    Posted date:  May 20, 2024  3:25 PM
  Number of letters in database: 147
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40