BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 49d0b5ffa3e7bf4085ecc4853ed236f8.SwissProt.fasta
16 sequences; 5,219 total letters
Query= ACIAD0701
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
Q6FE96 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 685 0.0
B0VRJ4 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 475 3e-173
A3M8J9 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 474 6e-173
B2HYF8 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 473 3e-172
B0V4Z1 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 471 2e-171
B7GWT8 Ribosomal RNA small subunit methyltransferase C [Acinetoba... 471 2e-171
A4VIL0 Ribosomal RNA small subunit methyltransferase C [Stutzerim... 294 7e-102
Q88PT7 Ribosomal RNA small subunit methyltransferase C [Pseudomon... 292 3e-101
B0KNH3 Ribosomal RNA small subunit methyltransferase C [Pseudomon... 291 6e-101
Q1IEU2 Ribosomal RNA small subunit methyltransferase C [Pseudomon... 289 5e-100
A5VYJ3 Ribosomal RNA small subunit methyltransferase C [Pseudomon... 288 1e-99
P39406 Ribosomal RNA small subunit methyltransferase C [Escherich... 172 2e-54
P42596 Ribosomal RNA large subunit methyltransferase G [Escherich... 86.3 3e-22
P37872 Uncharacterized protein YbxB [Bacillus subtilis (strain 168)] 74.3 5e-19
Q58292 Probable S-adenosylmethionine-dependent methyltransferase ... 51.6 4e-11
P08442 Uncharacterized protein syc1184_c [Synechococcus sp. (stra... 47.4 3e-09
>Q6FE96 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=338
Score = 685 bits (1767), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%), Gaps = 0/338 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD
Sbjct 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS
Sbjct 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD
Sbjct 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
Sbjct 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL
Sbjct 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT 338
WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT
Sbjct 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT 338
>B0VRJ4 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baumannii (strain SDF)]
Length=337
Score = 475 bits (1223), Expect = 3e-173
Identities = 232/337 (69%), Positives = 271/337 (80%), Gaps = 0/337 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEV+LRQQ YL ++LLIN P D L QL + SVWTWN+AD+Q F + +
Sbjct 1 MDPRSEVILRQQDYLKGRVLLINAPNDALVSQLPTEIDASVWTWNYADYQVFLNAGATAH 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
F+V FP Q DQ IIFVPKSKELL+Y+LHVV+SHL Q +FLVGEKKGGVERA+KQLQS
Sbjct 61 FSVEFPLQEFDQAIIFVPKSKELLNYILHVVMSHLKIDQSVFLVGEKKGGVERAAKQLQS 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
+GK +KLDSARHCQLW IE TE++KPLE WLK Y+V+ +L I ALPGVFSQ HLD
Sbjct 121 FGKILKLDSARHCQLWHLKIEKTEKIKPLESWLKTYTVQVNEQELTICALPGVFSQTHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
+GTAVLLPYLNQ+K G+IADFGCGAG+IS YLA+ + N IHALDIDAFAL+STE TF R
Sbjct 181 VGTAVLLPYLNQVKSGRIADFGCGAGIISCYLAKANSSNIIHALDIDAFALQSTEMTFSR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NG+ S++L L VTGI DAP LD IVSNPPFHQGIHT+Y ASEGLC+ AK+HL SGEL
Sbjct 241 NGIGSDQLRLQPVTGIADAPTELDAIVSNPPFHQGIHTNYDASEGLCQNAKKHLKASGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA 337
WIVANRFLNYP+LIE+ FGQC++KTD QGFK+LYA A
Sbjct 301 WIVANRFLNYPILIEKHFGQCEIKTDLQGFKVLYACA 337
>A3M8J9 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025
/ NCDC KC755 / 5377)]
Length=337
Score = 474 bits (1221), Expect = 6e-173
Identities = 232/337 (69%), Positives = 271/337 (80%), Gaps = 0/337 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEV+LRQQ YL ++LLIN P D L QL + SVWTWN+AD+Q F + +
Sbjct 1 MDPRSEVILRQQDYLKGRVLLINAPNDALVSQLPTEIDASVWTWNYADYQGFLNAGATAH 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
F+V FP Q DQ IIFVPKSKELL+Y+LHVV+SHL Q +FLVGEKKGGVERA+KQLQS
Sbjct 61 FSVEFPLQEFDQAIIFVPKSKELLNYILHVVMSHLKIDQSVFLVGEKKGGVERAAKQLQS 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
+GK +KLDSARHCQLW IE TE++KPLE WLK Y+V+ +L I ALPGVFSQ HLD
Sbjct 121 FGKILKLDSARHCQLWHLKIEKTEKIKPLESWLKTYTVQVNEQELTICALPGVFSQTHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
+GTAVLLPYLNQ+K G+IADFGCGAG+IS YLA+ + N IHALDIDAFAL+STE TF R
Sbjct 181 VGTAVLLPYLNQVKSGRIADFGCGAGIISCYLAKANSSNIIHALDIDAFALQSTEMTFSR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NG+ S++L L VTGI DAP LD IVSNPPFHQGIHT+Y ASEGLC+ AK+HL SGEL
Sbjct 241 NGIGSDQLRLQPVTGIADAPTELDAIVSNPPFHQGIHTNYDASEGLCQNAKKHLKASGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA 337
WIVANRFLNYP+LIE+ FGQC++KTD QGFK+LYA A
Sbjct 301 WIVANRFLNYPILIEKHFGQCEIKTDLQGFKVLYACA 337
>B2HYF8 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baumannii (strain ACICU)]
Length=337
Score = 473 bits (1216), Expect = 3e-172
Identities = 231/337 (69%), Positives = 270/337 (80%), Gaps = 0/337 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEV+LRQ YL ++LLIN P D L QL + SVWTWN+AD+Q F + +
Sbjct 1 MDPRSEVILRQHDYLKGRVLLINAPNDALVSQLPTEIDASVWTWNYADYQGFLNAGATAH 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
F+V FP Q DQ IIFVPKSKELL+Y+LHVV+SHL Q +FLVGEKKGGVERA+KQLQS
Sbjct 61 FSVEFPLQEFDQAIIFVPKSKELLNYILHVVMSHLKIDQSVFLVGEKKGGVERAAKQLQS 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
+GK +KLDSARHCQLW IE TE++KPLE WLK Y+V+ +L I ALPGVFSQ HLD
Sbjct 121 FGKILKLDSARHCQLWHLKIEKTEKIKPLESWLKTYTVQVNEQELTICALPGVFSQTHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
+GTAVLLPYLNQ+K G+IADFGCGAG+IS YLA+ + N IHALDIDAFAL+STE TF R
Sbjct 181 VGTAVLLPYLNQVKSGRIADFGCGAGIISCYLAKANSSNIIHALDIDAFALQSTEMTFSR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NG+ S++L L VTGI DAP LD IVSNPPFHQGIHT+Y ASEGLC+ AK+HL SGEL
Sbjct 241 NGIGSDQLRLQPVTGIADAPTELDAIVSNPPFHQGIHTNYDASEGLCQNAKKHLKASGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA 337
WIVANRFLNYP+LIE+ FGQC++KTD QGFK+LYA A
Sbjct 301 WIVANRFLNYPILIEKHFGQCEIKTDLQGFKVLYACA 337
>B0V4Z1 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baumannii (strain AYE)]
Length=337
Score = 471 bits (1211), Expect = 2e-171
Identities = 229/337 (68%), Positives = 269/337 (80%), Gaps = 0/337 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEV+LRQQ YL ++LLIN P D L QL + SVWTWN+AD+Q F + +
Sbjct 1 MDPRSEVILRQQDYLKGRVLLINAPNDALVSQLPTEIDASVWTWNYADYQGFVNTGTPAH 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
F+V FP Q DQ IIFVPKSKELL+Y+LHVV+SHL Q +FLVGEKKGGVERA+KQLQ+
Sbjct 61 FSVEFPSQEFDQAIIFVPKSKELLNYILHVVMSHLKTDQSVFLVGEKKGGVERAAKQLQN 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
+G +KLDSARHCQLW IE E++KPLE WLK Y+V+ +L I ALPGVFSQ HLD
Sbjct 121 FGTILKLDSARHCQLWHLKIEKIEKIKPLESWLKTYTVQVNGQELTICALPGVFSQTHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
+GTAVLLPYLNQ+K G+IADFGCGAG+IS YLA+ + N IHALDIDAFAL+STE TF R
Sbjct 181 VGTAVLLPYLNQVKSGRIADFGCGAGIISCYLAKANSSNIIHALDIDAFALQSTEMTFSR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NG+ S++L L VTGI DAP LD IVSNPPFHQGIHT+Y ASEGLC+ AK+HL SGEL
Sbjct 241 NGIGSDQLRLQPVTGIADAPTELDAIVSNPPFHQGIHTNYDASEGLCQNAKKHLKASGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA 337
WIVANRFLNYP+LIE+ FGQC++KTD QGFK+LYA A
Sbjct 301 WIVANRFLNYPILIEKHFGQCEIKTDLQGFKVLYACA 337
>B7GWT8 Ribosomal RNA small subunit methyltransferase C [Acinetobacter
baumannii (strain AB307-0294)]
Length=337
Score = 471 bits (1211), Expect = 2e-171
Identities = 229/337 (68%), Positives = 269/337 (80%), Gaps = 0/337 (0%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD 60
MDPRSEV+LRQQ YL ++LLIN P D L QL + SVWTWN+AD+Q F + +
Sbjct 1 MDPRSEVILRQQDYLKGRVLLINAPNDALVSQLPTEIDASVWTWNYADYQGFVNTGTPAH 60
Query 61 FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS 120
F+V FP Q DQ IIFVPKSKELL+Y+LHVV+SHL Q +FLVGEKKGGVERA+KQLQ+
Sbjct 61 FSVEFPSQEFDQAIIFVPKSKELLNYILHVVMSHLKTDQSVFLVGEKKGGVERAAKQLQN 120
Query 121 YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD 180
+G +KLDSARHCQLW IE E++KPLE WLK Y+V+ +L I ALPGVFSQ HLD
Sbjct 121 FGTILKLDSARHCQLWHLKIEKIEKIKPLESWLKTYTVQVNGQELTICALPGVFSQTHLD 180
Query 181 IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR 240
+GTAVLLPYLNQ+K G+IADFGCGAG+IS YLA+ + N IHALDIDAFAL+STE TF R
Sbjct 181 VGTAVLLPYLNQVKSGRIADFGCGAGIISCYLAKANSSNIIHALDIDAFALQSTEMTFSR 240
Query 241 NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL 300
NG+ S++L L VTGI DAP LD IVSNPPFHQGIHT+Y ASEGLC+ AK+HL SGEL
Sbjct 241 NGIGSDQLRLQPVTGIADAPTELDAIVSNPPFHQGIHTNYDASEGLCQNAKKHLKASGEL 300
Query 301 WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA 337
WIVANRFLNYP+LIE+ FGQC++KTD QGFK+LYA A
Sbjct 301 WIVANRFLNYPILIEKHFGQCEIKTDLQGFKVLYACA 337
>A4VIL0 Ribosomal RNA small subunit methyltransferase C [Stutzerimonas
stutzeri (strain A1501)]
Length=332
Score = 294 bits (752), Expect = 7e-102
Identities = 153/336 (46%), Positives = 217/336 (65%), Gaps = 8/336 (2%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQ-SIQS 59
MDPRSEV+LRQ + ++LL PAD+L QLA + W+W+ + Q + +
Sbjct 1 MDPRSEVLLRQAELFGGRVLLAGLPADDLLGQLAG---ATAWSWHAGEQQQLDKRFGGRC 57
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
F V P + D ++F+PKS+EL YLL + + LP G+ ++LVGEK+GG+ERA+KQL
Sbjct 58 SFGVAPPQGVFDTAVLFLPKSRELTDYLLQTLAARLP-GRPLYLVGEKRGGIERAAKQLG 116
Query 120 SYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHL 179
S+G+ KLDSARHCQLWQ +E L+ +H++++ + LE+ +LPGVFS L
Sbjct 117 SFGRARKLDSARHCQLWQVEVEQAPAAPNLDALARHFTLQLADGPLEVVSLPGVFSHGRL 176
Query 180 DIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQ 239
D+G+A+LL +L+ + G++ DFGCGAG++ A L + P +E+ LD+DAFA+ S+ T
Sbjct 177 DLGSALLLEHLDNLPGGRLLDFGCGAGILGATLKRRYPQSELVLLDVDAFAVESSRRTLA 236
Query 240 RNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGE 299
NGL +E + A GI AP+ L I+SNPPFHQG+HT Y ASE L + A +HL SGE
Sbjct 237 ANGLEAEVI---AGDGIDAAPRQLAAIISNPPFHQGVHTSYHASETLIERAAEHLQASGE 293
Query 300 LWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
+ IVAN FL YP LIE+ G CQ ++ GF+I A
Sbjct 294 MRIVANAFLRYPPLIERHLGTCQTLAERDGFRIYRA 329
>Q88PT7 Ribosomal RNA small subunit methyltransferase C [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=332
Score = 292 bits (748), Expect = 3e-101
Identities = 154/336 (46%), Positives = 213/336 (63%), Gaps = 8/336 (2%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSI-QS 59
MDPRSEV+LRQ + +L+ PAD+L QL Q WTW+ D + + +S
Sbjct 1 MDPRSEVLLRQAELFQGPLLIAGAPADDLLGQLP---QAQAWTWHAGDQAMLESRFAGRS 57
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
+ V P+ D ++F+PKS+EL +YLL+ + S L AG+ ++LVGEK+GG+E A+KQLQ
Sbjct 58 HYGVEAPEAAFDSAVLFLPKSRELAAYLLNALASRL-AGRELYLVGEKRGGIEGAAKQLQ 116
Query 120 SYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHL 179
++GK KLDSARHCQLWQ TI+ Q KPLE + + + E+ L++ +LPGVFS L
Sbjct 117 AFGKPRKLDSARHCQLWQVTIDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSHGRL 176
Query 180 DIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQ 239
D GTA+LL +L+ + G + DFGCGAGV+ A L + P + + LD+DAFA+ ++ T
Sbjct 177 DRGTALLLKHLDGLPGGHMLDFGCGAGVLGATLKRRYPQSRVTLLDVDAFAVAASRLTLA 236
Query 240 RNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGE 299
NGL E + + GI AP L +I+SNPPFH G+HT+Y ASE L K + HL GE
Sbjct 237 ANGLEGEVI---SGDGIDAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGE 293
Query 300 LWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
+ +VAN FL Y LIE G CQV+ + GF+I A
Sbjct 294 MRLVANSFLRYQPLIEGALGNCQVRDEADGFRIYQA 329
>B0KNH3 Ribosomal RNA small subunit methyltransferase C [Pseudomonas
putida (strain GB-1)]
Length=332
Score = 291 bits (746), Expect = 6e-101
Identities = 155/336 (46%), Positives = 213/336 (63%), Gaps = 8/336 (2%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSI-QS 59
MDPRSEV+LRQ + +L+ PAD+L QL Q WTW+ D + +S
Sbjct 1 MDPRSEVLLRQAELFQGPLLIAGAPADDLLGQLP---QAQAWTWHAGDQAMLDSRFAGRS 57
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
+AV PD D ++F+PKS+EL +YLL+ + S L AG+ ++LVGEK+GG+E A+KQLQ
Sbjct 58 HYAVEPPDLPFDSAVLFLPKSRELAAYLLNALASRL-AGRELYLVGEKRGGIEGAAKQLQ 116
Query 120 SYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHL 179
++GK KLDSARHCQLWQ TI+ Q KPLE + + + E+ L++ +LPGVFS L
Sbjct 117 AFGKPRKLDSARHCQLWQVTIDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSHGRL 176
Query 180 DIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQ 239
D GTA+LL +L+ + G + DFGCGAGV+ A L + P + + LD+DAFA+ ++ T
Sbjct 177 DRGTALLLKHLDGLPDGHMLDFGCGAGVLGATLKRRYPQSRVTMLDVDAFAVAASRLTLA 236
Query 240 RNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGE 299
NGL + + + GI AP L +I+SNPPFH G+HT+Y ASE L K + HL GE
Sbjct 237 ANGLEGDVI---SGDGIDAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGE 293
Query 300 LWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
+ +VAN FL Y LIE G CQV+ + GF+I A
Sbjct 294 MRLVANSFLRYQPLIEGALGNCQVRDEADGFRIYQA 329
>Q1IEU2 Ribosomal RNA small subunit methyltransferase C [Pseudomonas
entomophila (strain L48)]
Length=332
Score = 289 bits (740), Expect = 5e-100
Identities = 150/336 (45%), Positives = 214/336 (64%), Gaps = 8/336 (2%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQ-SIQS 59
MDPRSEV+LRQ + +L+ PAD L QL H WTW+ D + + +
Sbjct 1 MDPRSEVMLRQAELFQGPLLIAGAPADGLLGQLPKAHG---WTWHAGDQALLESRFGNRC 57
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
V P+ D I+F+PKS+EL +YLL+ + + L AG+ ++LVGEK+GG+E A+KQLQ
Sbjct 58 HHGVGVPEVAFDAAILFLPKSRELAAYLLNALAARL-AGRELYLVGEKRGGIEGAAKQLQ 116
Query 120 SYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHL 179
++GK KLDSARHCQLWQ T++ + KPLE + + + E+ L++ +LPGVFS L
Sbjct 117 AFGKPRKLDSARHCQLWQVTVDHAPEAKPLESLAERFELPLEDGPLQVVSLPGVFSHGRL 176
Query 180 DIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQ 239
D GTA+LL +L+ + G + DFGCGAGV+ A + + P +++ LD+DAFA+ ++ T
Sbjct 177 DKGTALLLEHLDGLPSGHVLDFGCGAGVLGATIKRRYPQSQVTLLDVDAFAVAASRLTLA 236
Query 240 RNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGE 299
NGL + + + GI AP LD+I+SNPPFH G+HTDY ASE L K + +HL GE
Sbjct 237 ANGLEGQVI---SGDGIDAAPGELDLILSNPPFHTGVHTDYQASENLLKKSGEHLRKGGE 293
Query 300 LWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
+ +VAN FL Y LIE G C+++ + QGF+I A
Sbjct 294 IRLVANSFLRYQPLIEGALGNCEIRAEAQGFRIYRA 329
>A5VYJ3 Ribosomal RNA small subunit methyltransferase C [Pseudomonas
putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 /
F1)]
Length=332
Score = 288 bits (738), Expect = 1e-99
Identities = 152/336 (45%), Positives = 212/336 (63%), Gaps = 8/336 (2%)
Query 1 MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSI-QS 59
MDPRSEV+LRQ + +L+ PAD+L QL Q WTW+ D + + +S
Sbjct 1 MDPRSEVLLRQAELFQGPLLIAGAPADDLLGQLP---QAQAWTWHAGDQAMLESRFAGRS 57
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
+ V P+ + ++F+PKS+EL +YLL+ + S L AG+ ++LVGEK+GG+E A+KQL
Sbjct 58 HYGVEAPEAAFESAVLFLPKSRELAAYLLNTLASRL-AGRELYLVGEKRGGIEGAAKQLA 116
Query 120 SYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHL 179
++GK KLDSARHCQLWQ TI+ Q KPLE + + + E+ L++ +LPGVFS L
Sbjct 117 AFGKPRKLDSARHCQLWQVTIDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSHGRL 176
Query 180 DIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQ 239
D GTA+LL +L+ + G + DFGCGAGV+ A L + P + + LD+DAFA+ ++ T
Sbjct 177 DRGTALLLKHLDGLPGGHMLDFGCGAGVLGATLKRRYPQSRVTLLDVDAFAVAASRLTLA 236
Query 240 RNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGE 299
NGL E + + GI AP L +I+SNPPFH G+HT+Y ASE L K + HL GE
Sbjct 237 ANGLEGEVI---SGDGIDAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGE 293
Query 300 LWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
+ +VAN FL Y LIE G CQV+ + GF+I A
Sbjct 294 MRLVANSFLRYQPLIEGALGNCQVRDEADGFRIYQA 329
>P39406 Ribosomal RNA small subunit methyltransferase C [Escherichia
coli (strain K12)]
Length=343
Score = 172 bits (436), Expect = 2e-54
Identities = 120/346 (35%), Positives = 175/346 (51%), Gaps = 24/346 (7%)
Query 3 PRSEVVLRQQQ-YLAIKILLINPPADELAQQL------AHKHQVSVW---TWNFADHQYF 52
P SEV+LR + +IL D+L +L AH Q W + D+ F
Sbjct 6 PASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARF 65
Query 53 QHQSIQSDFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVE 112
+ D A D +I + PK+K + L ++S LP G IF+VGE + GV
Sbjct 66 SLVATADDVADC------DTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVR 119
Query 113 RASKQLQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPG 172
A + L Y K+DSAR C L+ +E + + E++ YSV L + LPG
Sbjct 120 SAEQMLADYAPLNKVDSARRCGLYFGRLEK-QPVFDAEKFWGEYSVDG----LTVKTLPG 174
Query 173 VFSQNHLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALR 232
VFS++ LD+G+ +LL L GK+ D GCGAGV+S A+ SP + D+ A A+
Sbjct 175 VFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVE 234
Query 233 STEFTFQRNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQ 292
++ T NG+ E + A + D+I+SNPPFH G+ T A++ L + A +
Sbjct 235 ASRATLAANGVEGE---VFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVR 291
Query 293 HLNTSGELWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT 338
HLN+ GEL IVAN FL YP ++++TFG +V FK+ A T
Sbjct 292 HLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMT 337
>P42596 Ribosomal RNA large subunit methyltransferase G [Escherichia
coli (strain K12)]
Length=378
Score = 86.3 bits (212), Expect = 3e-22
Identities = 78/282 (28%), Positives = 129/282 (46%), Gaps = 14/282 (5%)
Query 60 DFAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQL- 118
D +P Q P V+I VPK+ LL L + + + I + G K + ++ +L
Sbjct 98 DSTADYPQQ-PGVVLIKVPKTLALLEQQLRALRKVVTSDTRI-IAGAKARDIHTSTLELF 155
Query 119 -QSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQN 177
+ G T + + +L T QL Q + S K E I+ VFS+
Sbjct 156 EKVLGPTTTTLAWKKARLINCTFNEP-QLADAPQTV---SWKLEGTDWTIHNHANVFSRT 211
Query 178 HLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFT 237
LDIG + +L + G+I D GCG GVI L +P ++ +D A+ S+
Sbjct 212 GLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN 271
Query 238 FQRNGLAS----ERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQH 293
+ N + E + +A++G++ P + ++ NPPFHQ + + + A++
Sbjct 272 VETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 329
Query 294 LNTSGELWIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA 335
L +GEL+IVANR L+Y +++ FG C F +L A
Sbjct 330 LKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKA 371
>P37872 Uncharacterized protein YbxB [Bacillus subtilis (strain
168)]
Length=201
Score = 74.3 bits (181), Expect = 5e-19
Identities = 48/169 (28%), Positives = 84/169 (50%), Gaps = 8/169 (5%)
Query 172 GVFSQNHLDIGTAVLLPYLNQIKL-GKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFA 230
GVFS+ +D G+ +L+ + ++ G I D GCG G I LA IH +D++ A
Sbjct 35 GVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERA 94
Query 231 LRSTEFTFQRNGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTA 290
+ + ++NG+ + +++ + D+ + I++NPP G ++ E +
Sbjct 95 VELSNENAEQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAIFE----KS 150
Query 291 KQHLNTSGELWIVANRFLNYPLLI---EQTFGQCQVKTDQQGFKILYAK 336
+HL SGELWIV + P I E+ F + V ++G+ I+ AK
Sbjct 151 AEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAK 199
Score = 22.3 bits (46), Expect = 0.20
Identities = 23/103 (22%), Positives = 48/103 (47%), Gaps = 9/103 (9%)
Query 17 IKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSDFAVTFPDQIPDQVIIF 76
I ++ +N A EL+ + A ++ ++ N +Q ++ S A TF + + I
Sbjct 85 IHMIDVNERAVELSNENAEQNGIT----NVKIYQSDLFSNVDS--AQTFASILTNPPI-- 136
Query 77 VPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQ 119
K+++ + HL A +++V +KK G A ++L+
Sbjct 137 -RAGKKVVHAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLE 178
>Q58292 Probable S-adenosylmethionine-dependent methyltransferase
MJ0882 [Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)]
Length=197
Score = 51.6 bits (122), Expect = 4e-11
Identities = 45/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query 172 GVFSQNHLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFAL 231
GVFS +D GT +L+ + K I D GCG GVI LA + DI+ A+
Sbjct 33 GVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTM--ADINRRAI 90
Query 232 RSTEFTFQRNGLAS---ERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCK 288
+ + + N L + +H ++D + + I++NPP G + +
Sbjct 91 KLAKENIKLNNLDNYDIRVVHSDLYENVKD--RKYNKIITNPPIRAG----KEVLHRIIE 144
Query 289 TAKQHLNTSGELWIV------ANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAK 336
K+ L +GE+W+V A Y ++ FG + T + G+++L +K
Sbjct 145 EGKELLKDNGEIWVVIQTKQGAKSLAKY---MKDVFGNVETVTIKGGYRVLKSK 195
>P08442 Uncharacterized protein syc1184_c [Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1)]
Length=417
Score = 47.4 bits (111), Expect = 3e-09
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (2%)
Query 192 QIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQRNGLASERLHLH 251
Q+ +I D GCG GV + YLA L+P EI A+DI A L + QR+G+A +R+H
Sbjct 69 QLGRPRILDAGCGTGVSTDYLAHLNPSAEITAIDISAGTLAVAQERCQRSGVA-DRIHFQ 127
Query 252 AVT 254
++
Sbjct 128 QLS 130
Lambda K H a alpha
0.322 0.136 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1304364
Database: 49d0b5ffa3e7bf4085ecc4853ed236f8.SwissProt.fasta
Posted date: Jun 1, 2024 11:16 PM
Number of letters in database: 5,219
Number of sequences in database: 16
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
