Comparative Genomics

ACIAD0701 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8f325ac90ba0b365170e549ed39c4516.TrEMBL.fasta
           13 sequences; 4,485 total letters



Query= ACIAD0701

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7G2SE19 Ribosomal RNA small subunit methyltransferase C [Acine...  682     0.0  
A0A1P8EJG4 Ribosomal RNA small subunit methyltransferase C [Acine...  510     0.0  
A0A0M1I4V5 Ribosomal RNA small subunit methyltransferase C [Acine...  509     0.0  
A0A150HKP4 Ribosomal RNA small subunit methyltransferase C [Acine...  508     0.0  
A0A3R9GG11 Ribosomal RNA small subunit methyltransferase C [Acine...  506     0.0  
A0A3D2SK74 Ribosomal RNA small subunit methyltransferase C [Acine...  506     0.0  
N9BQY0 Ribosomal RNA small subunit methyltransferase C [Acinetoba...  506     0.0  
N9DC62 Ribosomal RNA small subunit methyltransferase C [Acinetoba...  506     0.0  
A0A3R9DHD5 Ribosomal RNA small subunit methyltransferase C [Acine...  506     0.0  
A0A3F3L8S4 Ribosomal RNA small subunit methyltransferase C [Acine...  506     0.0  
N8ZX72 Ribosomal RNA small subunit methyltransferase C [Acinetoba...  504     0.0  
Q5SKW0 Probable ribosomal RNA small subunit methyltransferase [Th...  90.9    7e-24
Q9WX77 Orf375 [Thermus thermophilus]                                  90.5    9e-24


>A0A7G2SE19 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
sp]
Length=338

 Score = 682 bits (1761),  Expect = 0.0
 Identities = 337/338 (99%), Positives = 337/338 (99%), Gaps = 0/338 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQQYLAIKILLI PPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD
Sbjct  1    MDPRSEVVLRQQQYLAIKILLITPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS
Sbjct  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD
Sbjct  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
Sbjct  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL
Sbjct  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338
            WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT
Sbjct  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338


>A0A1P8EJG4 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
soli]
Length=341

 Score = 510 bits (1313),  Expect = 0.0
 Identities = 249/338 (74%), Positives = 280/338 (83%), Gaps = 0/338 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQ QY +  +LLINPPAD L  +L    Q SVWTWNFADHQYF+ QSI S 
Sbjct  1    MDPRSEVVLRQHQYFSGTVLLINPPADGLCHELNQHAQASVWTWNFADHQYFEQQSIVSS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F V FP   PDQVIIFVPKSKELL Y+LHVVVSHL  GQ IFLVGEKKGGVERA+KQL  
Sbjct  61   FGVHFPSVTPDQVIIFVPKSKELLRYILHVVVSHLTQGQSIFLVGEKKGGVERAAKQLLD  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQT I+ TEQL+PLEQW++ Y+V+     L + ALPGVFSQ  LD
Sbjct  121  YGKTIKLDSARHCQLWQTKIDKTEQLRPLEQWVQQYTVEVAQNSLTVCALPGVFSQRQLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL QIK GK+ADFGCGAGV+SA LAQL+P N+I+A+D+DAFAL STE TF+ 
Sbjct  181  VGTAVLLPYLEQIKSGKLADFGCGAGVLSASLAQLNPQNKIYAMDVDAFALCSTEMTFRL  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  ++L L AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLC TAK+HL  +GEL
Sbjct  241  NGLNPDQLQLCAVTGIHDAPSDLDAIVSNPPFHQGIHTDYAASEGLCTTAKKHLKANGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338
            WIVANRFLNYP+LIEQ FGQCQ+K DQQGFK+LYAKAT
Sbjct  301  WIVANRFLNYPVLIEQAFGQCQIKADQQGFKVLYAKAT  338


>A0A0M1I4V5 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
sp. C15]
Length=341

 Score = 509 bits (1310),  Expect = 0.0
 Identities = 248/338 (73%), Positives = 280/338 (83%), Gaps = 0/338 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQ QY +  +LLINPPAD L  +L    Q SVWTWNFADHQYF+ QSI + 
Sbjct  1    MDPRSEVVLRQHQYFSGTVLLINPPADGLCHELNQHAQASVWTWNFADHQYFEQQSIVTS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F V FP   PDQVIIFVPKSKELL Y+LHVVVSHL  GQ IFLVGEKKGGVERA+KQL  
Sbjct  61   FGVHFPSVTPDQVIIFVPKSKELLRYILHVVVSHLTQGQSIFLVGEKKGGVERAAKQLLD  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQT I+ TEQL+PLEQW++ Y+V+     L + ALPGVFSQ  LD
Sbjct  121  YGKTIKLDSARHCQLWQTKIDKTEQLRPLEQWVQQYTVEVAQNSLTVCALPGVFSQRQLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL QIK GK+ADFGCGAGV+SA LAQL+P N+I+A+D+DAFAL STE TF+ 
Sbjct  181  VGTAVLLPYLEQIKSGKLADFGCGAGVLSASLAQLNPQNKIYAMDVDAFALCSTEMTFRL  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  ++L L AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLC TAK+HL  +GEL
Sbjct  241  NGLNPDQLQLCAVTGIHDAPSDLDAIVSNPPFHQGIHTDYAASEGLCTTAKKHLKANGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338
            WIVANRFLNYP+LIEQ FGQCQ+K DQQGFK+LYAKAT
Sbjct  301  WIVANRFLNYPVLIEQAFGQCQIKADQQGFKVLYAKAT  338


>A0A150HKP4 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
venetianus]
Length=338

 Score = 508 bits (1307),  Expect = 0.0
 Identities = 250/337 (74%), Positives = 282/337 (84%), Gaps = 0/337 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQ YL  ++LLIN P D+LA+ L  + Q SVWTWN+ADHQ F    I S 
Sbjct  1    MDPRSEVVLRQQDYLNGQVLLINAPNDQLAKNLPTQVQASVWTWNYADHQSFLSSGIDSS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP    DQV+IFVPKSKELLSY+LHVVVSHL  GQ+IFLVGEKKGGVERA+KQLQ 
Sbjct  61   FSVEFPQSNFDQVVIFVPKSKELLSYILHVVVSHLTIGQNIFLVGEKKGGVERAAKQLQP  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQ  IE  EQLKPLEQWLK Y+V+    QLEIYALPGVFSQ HLD
Sbjct  121  YGKTLKLDSARHCQLWQLKIEKAEQLKPLEQWLKAYTVQVNQNQLEIYALPGVFSQAHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL+Q+K GKIADFGCGAGVIS++LA+L+P   I ALD+DAFALRSTE TFQR
Sbjct  181  VGTAVLLPYLSQVKSGKIADFGCGAGVISSFLAKLNPEQHIFALDVDAFALRSTEMTFQR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL   +LHL AVTG++DAPK LD IVSNPPFHQGIHT+Y ASE LC+ AK HL +SGEL
Sbjct  241  NGLDLAQLHLQAVTGLKDAPKELDAIVSNPPFHQGIHTNYDASEELCQLAKSHLKSSGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA  337
            WIVANRFLNYP LIEQ+FGQC +KTDQQGFK+L+A A
Sbjct  301  WIVANRFLNYPPLIEQSFGQCMIKTDQQGFKVLFASA  337


>A0A3R9GG11 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
soli]
Length=341

 Score = 506 bits (1304),  Expect = 0.0
 Identities = 247/338 (73%), Positives = 279/338 (83%), Gaps = 0/338 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQ QY +  +LLINPPAD L  +L    Q SVWTWNFADHQYF+ QSI + 
Sbjct  1    MDPRSEVVLRQHQYFSGTVLLINPPADGLCHELNQHAQASVWTWNFADHQYFEQQSIVTS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F V FP   PDQVIIFVPKSKELL Y+LHVVVSHL  GQ IFLVGEKKGGVERA+KQL  
Sbjct  61   FGVHFPSVTPDQVIIFVPKSKELLRYILHVVVSHLTQGQSIFLVGEKKGGVERAAKQLLD  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQT I+  EQL+PLEQW++ Y+V+     L + ALPGVFSQ  LD
Sbjct  121  YGKTIKLDSARHCQLWQTKIDKPEQLRPLEQWVQQYTVEVAQNSLTVCALPGVFSQRQLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL QIK GK+ADFGCGAGV+SA LAQL+P N+I+A+D+DAFAL STE TF+ 
Sbjct  181  VGTAVLLPYLEQIKSGKLADFGCGAGVLSASLAQLNPQNKIYAMDVDAFALCSTEMTFRL  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  ++L L AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLC TAK+HL  +GEL
Sbjct  241  NGLNPDQLQLCAVTGIHDAPSDLDAIVSNPPFHQGIHTDYAASEGLCTTAKKHLKANGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338
            WIVANRFLNYP+LIEQ FGQCQ+K DQQGFK+LYAKAT
Sbjct  301  WIVANRFLNYPVLIEQAFGQCQIKADQQGFKVLYAKAT  338


>A0A3D2SK74 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
ursingii]
Length=339

 Score = 506 bits (1304),  Expect = 0.0
 Identities = 245/335 (73%), Positives = 278/335 (83%), Gaps = 0/335 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQQ+L+ K+LLIN PADELA++L +   +S+WTWNFADHQYF+ Q   + 
Sbjct  1    MDPRSEVVLRQQQFLSGKVLLINAPADELARELPNDLNISIWTWNFADHQYFEQQQFATH  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP +  DQVIIFVPKSKELLSY+LHVV SHLP GQ IFLVGEKKGGVERA+KQLQ 
Sbjct  61   FSVEFPQKDIDQVIIFVPKSKELLSYILHVVASHLPQGQSIFLVGEKKGGVERAAKQLQV  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
             GK +KLDSARHCQLWQ  +   E LKPLE W+K YS++    QL I ALPGVFSQNHLD
Sbjct  121  LGKNLKLDSARHCQLWQCILHKMETLKPLENWVKTYSIEVNQTQLHICALPGVFSQNHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GT +LLPYLN IK GK+ADFGCGAGVIS YLA+L+ +NEI+ALD+DAFALRSTE TF R
Sbjct  181  VGTGILLPYLNNIKSGKLADFGCGAGVISTYLAKLNCNNEIYALDVDAFALRSTEMTFHR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  E+LH+ AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLCK AKQHL  +GEL
Sbjct  241  NGLHLEQLHIQAVTGIHDAPLELDAIVSNPPFHQGIHTDYAASEGLCKQAKQHLTVNGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA  335
            WIVANRFLNYPLLIEQ FG+C    DQQGFK+LYA
Sbjct  301  WIVANRFLNYPLLIEQQFGRCNTLADQQGFKVLYA  335


>N9BQY0 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
soli NIPH 2899]
Length=341

 Score = 506 bits (1303),  Expect = 0.0
 Identities = 248/338 (73%), Positives = 279/338 (83%), Gaps = 0/338 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQ QY +  +LLINPPAD L  +L    Q SVWTWNFADHQYF+ QSI + 
Sbjct  1    MDPRSEVVLRQHQYFSGTVLLINPPADGLCHELNQHAQASVWTWNFADHQYFEQQSIVTS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F V FP   PDQVIIFVPKSKELL Y+LHVVVSHL  GQ IFLVGEKKGGVERA+KQL  
Sbjct  61   FGVHFPSVTPDQVIIFVPKSKELLRYILHVVVSHLTQGQSIFLVGEKKGGVERAAKQLID  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQT I+ TEQL+PLEQW++ Y+V+     L + ALPGVFSQ  LD
Sbjct  121  YGKTIKLDSARHCQLWQTKIDKTEQLQPLEQWVQQYTVEVAQNSLTVCALPGVFSQRQLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL QIK GK+ADFGCGAGV+SA LAQL+P N+I A+D+DAFAL STE TF+ 
Sbjct  181  VGTAVLLPYLEQIKSGKLADFGCGAGVLSASLAQLNPQNKICAMDVDAFALCSTEMTFRL  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  ++L L AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLC TAK+HL  +GEL
Sbjct  241  NGLNPDQLQLCAVTGIHDAPSDLDAIVSNPPFHQGIHTDYAASEGLCTTAKKHLKANGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT  338
            WIVANRFLNYP+LIEQ FGQCQ+K DQQGFK+LYAKAT
Sbjct  301  WIVANRFLNYPVLIEQAFGQCQIKADQQGFKVLYAKAT  338


>N9DC62 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
ursingii ANC 3649]
Length=340

 Score = 506 bits (1302),  Expect = 0.0
 Identities = 245/335 (73%), Positives = 279/335 (83%), Gaps = 0/335 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQQ+L+ K+LLIN PADELA++L +   +S+WTWNFADHQYF+ Q   + 
Sbjct  2    MDPRSEVVLRQQQFLSGKVLLINAPADELARELPNDLNISIWTWNFADHQYFEQQQFATH  61

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP +  DQVIIFVPKSKELLSY+LHVV SHL  GQ IFLVGEKKGGVERA+KQLQ 
Sbjct  62   FSVEFPQKDIDQVIIFVPKSKELLSYILHVVASHLKQGQSIFLVGEKKGGVERAAKQLQV  121

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
             GK +KLDSARHCQLWQ  +  TE LKPLE W+K YS++    QL I ALPGVFSQNHLD
Sbjct  122  LGKNLKLDSARHCQLWQCILHKTETLKPLENWVKTYSIEVNQTQLHICALPGVFSQNHLD  181

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GT +LLPYLN IK GK+ADFGCGAGVISAYLA+L+ +NEI+ALD+DAFALRSTE TF R
Sbjct  182  VGTGILLPYLNNIKSGKLADFGCGAGVISAYLAKLNCNNEIYALDVDAFALRSTEMTFHR  241

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  E+LH+ AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLCK AK+HL  +GEL
Sbjct  242  NGLHLEQLHIQAVTGIHDAPLELDAIVSNPPFHQGIHTDYAASEGLCKQAKRHLTVNGEL  301

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA  335
            WIVANRFLNYPLLIEQ FG+C    DQQGFK+LYA
Sbjct  302  WIVANRFLNYPLLIEQQFGRCNTLADQQGFKVLYA  336


>A0A3R9DHD5 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
sp. FDAARGOS_515]
Length=339

 Score = 506 bits (1302),  Expect = 0.0
 Identities = 245/335 (73%), Positives = 279/335 (83%), Gaps = 0/335 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQQ+L+ K+LLIN PADELA++L +   +S+WTWNFADHQYF+ Q   + 
Sbjct  1    MDPRSEVVLRQQQFLSGKVLLINAPADELARELPNDLNISIWTWNFADHQYFEQQQFATH  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP +  DQVIIFVPKSKELLSY+LHVV SHL  GQ IFLVGEKKGGVERA+KQLQ 
Sbjct  61   FSVEFPQKDIDQVIIFVPKSKELLSYILHVVASHLKQGQSIFLVGEKKGGVERAAKQLQV  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
             GK +KLDSARHCQLWQ  +  TE LKPLE W+K YS++    QL I ALPGVFSQNHLD
Sbjct  121  LGKNLKLDSARHCQLWQCILHKTETLKPLENWVKTYSIEVNQTQLHICALPGVFSQNHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GT +LLPYLN IK GK+ADFGCGAGVISAYLA+L+ +NEI+ALD+DAFALRSTE TF R
Sbjct  181  VGTGILLPYLNNIKSGKLADFGCGAGVISAYLAKLNCNNEIYALDVDAFALRSTEMTFHR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  E+LH+ AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLCK AK+HL  +GEL
Sbjct  241  NGLHLEQLHIQAVTGIHDAPLELDAIVSNPPFHQGIHTDYAASEGLCKQAKRHLTVNGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA  335
            WIVANRFLNYPLLIEQ FG+C    DQQGFK+LYA
Sbjct  301  WIVANRFLNYPLLIEQQFGRCNTLADQQGFKVLYA  335


>A0A3F3L8S4 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
ursingii]
Length=339

 Score = 506 bits (1302),  Expect = 0.0
 Identities = 245/335 (73%), Positives = 279/335 (83%), Gaps = 0/335 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQQ+L+ K+LLIN PADELA++L +   +S+WTWNFADHQYF+ Q   + 
Sbjct  1    MDPRSEVVLRQQQFLSGKVLLINAPADELARELPNDLNISIWTWNFADHQYFEQQQFATH  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP +  DQVIIFVPKSKELLSY+LHVV SHL  GQ IFLVGEKKGGVERA+KQLQ 
Sbjct  61   FSVEFPQKDIDQVIIFVPKSKELLSYILHVVASHLKQGQSIFLVGEKKGGVERAAKQLQV  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
             GK +KLDSARHCQLWQ  +  TE LKPLE W+K YS++    QL I ALPGVFSQNHLD
Sbjct  121  LGKNLKLDSARHCQLWQCILHKTETLKPLENWVKTYSIEVNQTQLHICALPGVFSQNHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GT +LLPYLN IK GK+ADFGCGAGVISAYLA+L+ +NEI+ALD+DAFALRSTE TF R
Sbjct  181  VGTGILLPYLNNIKSGKLADFGCGAGVISAYLAKLNCNNEIYALDVDAFALRSTEMTFHR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL  E+LH+ AVTGI DAP  LD IVSNPPFHQGIHTDY+ASEGLCK AK+HL  +GEL
Sbjct  241  NGLHLEQLHIQAVTGIHDAPLELDAIVSNPPFHQGIHTDYAASEGLCKQAKRHLTVNGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYA  335
            WIVANRFLNYPLLIEQ FG+C    DQQGFK+LYA
Sbjct  301  WIVANRFLNYPLLIEQQFGRCNTLADQQGFKVLYA  335


>N8ZX72 Ribosomal RNA small subunit methyltransferase C [Acinetobacter 
venetianus (strain ATCC 31012 / DSM 23050 / BCRC 14357 
/ CCUG 45561 / CIP 110063 / KCTC 2702 / LMG 19082 / RAG-1)]
Length=338

 Score = 504 bits (1298),  Expect = 0.0
 Identities = 249/337 (74%), Positives = 281/337 (83%), Gaps = 0/337 (0%)

Query  1    MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD  60
            MDPRSEVVLRQQ YL  ++LLIN P D+LA+ L  + Q SVWTWN+ADHQ F    I S 
Sbjct  1    MDPRSEVVLRQQDYLNGQVLLINAPNDQLAKNLPTQVQASVWTWNYADHQSFLSSGIDSS  60

Query  61   FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS  120
            F+V FP    DQV+IFVPKSKELLSY+LHVVVSHL  GQ+IFLVGEKKGGVERA+KQLQ 
Sbjct  61   FSVEFPQSNFDQVVIFVPKSKELLSYILHVVVSHLTIGQNIFLVGEKKGGVERAAKQLQP  120

Query  121  YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD  180
            YGKT+KLDSARHCQLWQ  IE  EQLKPLEQWLK Y+V+    QLEI ALPGVFSQ HLD
Sbjct  121  YGKTLKLDSARHCQLWQLKIEKAEQLKPLEQWLKAYTVQVNQDQLEICALPGVFSQAHLD  180

Query  181  IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR  240
            +GTAVLLPYL+Q+K GKIADFGCGAGVIS++LA+L+P   I ALD+DAFALRSTE TFQR
Sbjct  181  VGTAVLLPYLSQVKSGKIADFGCGAGVISSFLAKLNPEQHIFALDVDAFALRSTEMTFQR  240

Query  241  NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL  300
            NGL   +LHL AVTG++DAPK LD IVSNPPFHQGIHT+Y ASE LC+ AK HL +SGEL
Sbjct  241  NGLDLAQLHLQAVTGLKDAPKELDAIVSNPPFHQGIHTNYDASEELCQLAKSHLKSSGEL  300

Query  301  WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKA  337
            WIVANRFLNYP LIEQ+FGQC +KTDQQGFK+L+A A
Sbjct  301  WIVANRFLNYPPLIEQSFGQCMIKTDQQGFKVLFASA  337


>Q5SKW0 Probable ribosomal RNA small subunit methyltransferase 
[Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)]
Length=375

 Score = 90.9 bits (224),  Expect = 7e-24
 Identities = 68/252 (27%), Positives = 119/252 (47%), Gaps = 19/252 (8%)

Query  95   LPAGQHIFLVGEKKGGVERASKQ---LQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQ  151
            L  G  ++L G+K  G ER  K+   L  YG  V+ +      L    +E  ++  PL  
Sbjct  129  LRMGGRLYLAGDKNKGFERYFKEARALLGYGVVVRREGPYRVAL----LEKEKEAPPLPS  184

Query  152  WLKHYSVKNENIQLEIYALPGVFSQNHLDIGTAVLLPYLNQIKLG-------KIADFGCG  204
              + +S +    +   + LPGVFS   +D  + +LL  L + +LG       ++ D G G
Sbjct  185  LWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQE-RLGPEGVRGRQVLDLGAG  243

Query  205  AGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQRNGLASERLHLHAVTGIQDAPKALD  264
             G ++  LA++    E+  ++ D  ++ S +   + N L ++ LH      + +  +  D
Sbjct  244  YGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEAR-FD  300

Query  265  VIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNYPLLIEQTFGQCQVK  324
            +IV+NPPFH G       ++     A   L   G  ++V+N FL Y  L+E+ FG  Q  
Sbjct  301  IIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL  360

Query  325  TDQQGFKILYAK  336
               + +K+L+A+
Sbjct  361  KVAE-YKVLFAE  371


>Q9WX77 Orf375 [Thermus thermophilus]
Length=375

 Score = 90.5 bits (223),  Expect = 9e-24
 Identities = 68/252 (27%), Positives = 119/252 (47%), Gaps = 19/252 (8%)

Query  95   LPAGQHIFLVGEKKGGVERASKQ---LQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQ  151
            L  G  ++L G+K  G ER  K+   L  YG  V+ +      L    +E  ++  PL  
Sbjct  129  LRMGGRLYLAGDKNKGFERYFKEARALLGYGVVVRREGPYRVAL----LEKEKEAPPLPS  184

Query  152  WLKHYSVKNENIQLEIYALPGVFSQNHLDIGTAVLLPYLNQIKLG-------KIADFGCG  204
              + +S +    +   + LPGVFS   +D  + +LL  L + +LG       ++ D G G
Sbjct  185  LWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQE-RLGPEGVRGRQVLDLGAG  243

Query  205  AGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQRNGLASERLHLHAVTGIQDAPKALD  264
             G ++  LA++    E+  ++ D  ++ S +   + N L ++ LH      + +  +  D
Sbjct  244  YGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEAR-FD  300

Query  265  VIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNYPLLIEQTFGQCQVK  324
            +IV+NPPFH G       ++     A   L   G  ++V+N FL Y  L+E+ FG  Q  
Sbjct  301  IIVTNPPFHVGGAVILDVAQAFVDVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL  360

Query  325  TDQQGFKILYAK  336
               + +K+L+A+
Sbjct  361  KVAE-YKVLFAE  371



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138891


  Database: 8f325ac90ba0b365170e549ed39c4516.TrEMBL.fasta
    Posted date:  May 20, 2024  7:26 PM
  Number of letters in database: 4,485
  Number of sequences in database:  13



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40