Comparative Genomics

ACIAD0730 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5d2bd24029648dac14a5afc65f75c1b2.SwissProt.fasta
           27 sequences; 4,034 total letters



Query= ACIAD0730

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FE71 NADH-quinone oxidoreductase subunit A [Acinetobacter bayly...  362     8e-134
B0V7U8 NADH-quinone oxidoreductase subunit A [Acinetobacter bauma...  321     2e-117
A3M2P8 NADH-quinone oxidoreductase subunit A [Acinetobacter bauma...  320     3e-117
B0VU56 NADH-quinone oxidoreductase subunit A [Acinetobacter bauma...  320     3e-117
B2HU41 NADH-quinone oxidoreductase subunit A [Acinetobacter bauma...  320     3e-117
A5WG48 NADH-quinone oxidoreductase subunit A [Psychrobacter sp. (...  201     2e-69 
Q4FU64 NADH-quinone oxidoreductase subunit A [Psychrobacter arcti...  189     6e-65 
Q1QD97 NADH-quinone oxidoreductase subunit A [Psychrobacter cryoh...  184     8e-63 
Q3KA63 NADH-quinone oxidoreductase subunit A [Pseudomonas fluores...  155     2e-52 
Q1I800 NADH-quinone oxidoreductase subunit A [Pseudomonas entomop...  152     2e-51 
B1J6N4 NADH-quinone oxidoreductase subunit A [Pseudomonas putida ...  151     7e-51 
Q88FH7 NADH-quinone oxidoreductase subunit A [Pseudomonas putida ...  151     7e-51 
B0KMX8 NADH-quinone oxidoreductase subunit A [Pseudomonas putida ...  151     7e-51 
A5W192 NADH-quinone oxidoreductase subunit A [Pseudomonas putida ...  151     7e-51 
Q4ZRJ3 NADH-quinone oxidoreductase subunit A [Pseudomonas syringa...  148     1e-49 
Q87ZQ9 NADH-quinone oxidoreductase subunit A [Pseudomonas syringa...  148     1e-49 
Q48H54 NADH-quinone oxidoreductase subunit A [Pseudomonas savasta...  148     1e-49 
O85273 NADH-quinone oxidoreductase subunit A [Pectobacterium caro...  142     3e-47 
P0AFC3 NADH-quinone oxidoreductase subunit A [Escherichia coli (s...  133     8e-44 
P19045 NAD(P)H-quinone oxidoreductase subunit 3 [Synechocystis sp...  89.7    6e-27 
Q8DJ02 NAD(P)H-quinone oxidoreductase subunit 3 [Thermosynechococ...  80.5    3e-23 
P0A3S5 NAD(P)H-quinone oxidoreductase subunit 3 [Nostoc sp. (stra...  80.1    3e-23 
P26303 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [T...  79.0    8e-23 
P19044 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [Z...  77.4    3e-22 
Q36664 NADH-ubiquinone oxidoreductase chain 3 [Pinus sylvestris]      75.5    2e-21 
Q31792 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [A...  75.5    2e-21 
P18630 NADH-ubiquinone oxidoreductase chain 3 [Oenothera berteroana]  72.8    2e-20 


>Q6FE71 NADH-quinone oxidoreductase subunit A [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=183

 Score = 362 bits (930),  Expect = 8e-134
 Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS
Sbjct  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW
Sbjct  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120

Query  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180
            SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS
Sbjct  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180

Query  181  KQE  183
            KQE
Sbjct  181  KQE  183


>B0V7U8 NADH-quinone oxidoreductase subunit A [Acinetobacter baumannii 
(strain AYE)]
Length=183

 Score = 321 bits (822),  Expect = 2e-117
 Identities = 159/183 (87%), Positives = 173/183 (95%), Gaps = 0/183 (0%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS
Sbjct  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            AKFYLVAIFFVVFDLEALYLYAW+TSVREVGW+G+TT+VIFVVDLLIAL+Y F+ GAL+W
Sbjct  61   AKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSW  120

Query  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180
            +P+DRRK AG K K+GSP MNIAEITRFNSIEELV DPTG IPAQSSGR+KSKT+ A SS
Sbjct  121  APADRRKLAGEKVKVGSPTMNIAEITRFNSIEELVTDPTGQIPAQSSGRVKSKTTPALSS  180

Query  181  KQE  183
            ++E
Sbjct  181  EKE  183


>A3M2P8 NADH-quinone oxidoreductase subunit A [Acinetobacter baumannii 
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 
/ 5377)]
Length=183

 Score = 320 bits (821),  Expect = 3e-117
 Identities = 159/183 (87%), Positives = 173/183 (95%), Gaps = 0/183 (0%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS
Sbjct  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            AKFYLVAIFFVVFDLEALYLYAW+TSVREVGW+G+TT+VIFVVDLLIAL+Y F+ GAL+W
Sbjct  61   AKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSW  120

Query  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180
            +P+DRRK AG K K+GSP MNIAEITRFNSIEELV DPTG IPAQSSGR+KSKT+ A SS
Sbjct  121  APADRRKLAGEKIKVGSPTMNIAEITRFNSIEELVTDPTGQIPAQSSGRVKSKTTPALSS  180

Query  181  KQE  183
            ++E
Sbjct  181  EKE  183


>B0VU56 NADH-quinone oxidoreductase subunit A [Acinetobacter baumannii 
(strain SDF)]
Length=183

 Score = 320 bits (821),  Expect = 3e-117
 Identities = 159/183 (87%), Positives = 173/183 (95%), Gaps = 0/183 (0%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS
Sbjct  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            AKFYLVAIFFVVFDLEALYLYAW+TSVREVGW+G+TT+VIFVVDLLIAL+Y F+ GAL+W
Sbjct  61   AKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSW  120

Query  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180
            +P+DRRK AG K K+GSP MNIAEITRFNSIEELV DPTG IPAQSSGR+KSKT+ A SS
Sbjct  121  APADRRKLAGEKIKVGSPTMNIAEITRFNSIEELVTDPTGQIPAQSSGRVKSKTTPALSS  180

Query  181  KQE  183
            ++E
Sbjct  181  EKE  183


>B2HU41 NADH-quinone oxidoreductase subunit A [Acinetobacter baumannii 
(strain ACICU)]
Length=183

 Score = 320 bits (821),  Expect = 3e-117
 Identities = 159/183 (87%), Positives = 173/183 (95%), Gaps = 0/183 (0%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS
Sbjct  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            AKFYLVAIFFVVFDLEALYLYAW+TSVREVGW+G+TT+VIFVVDLLIAL+Y F+ GAL+W
Sbjct  61   AKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSW  120

Query  121  SPSDRRKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRMKSKTSTAPSS  180
            +P+DRRK AG K K+GSP MNIAEITRFNSIEELV DPTG IPAQSSGR+KSKT+ A SS
Sbjct  121  APADRRKLAGEKIKVGSPTMNIAEITRFNSIEELVTDPTGQIPAQSSGRVKSKTTPALSS  180

Query  181  KQE  183
            ++E
Sbjct  181  EKE  183


>A5WG48 NADH-quinone oxidoreductase subunit A [Psychrobacter sp. 
(strain PRwf-1)]
Length=211

 Score = 201 bits (510),  Expect = 2e-69
 Identities = 98/164 (60%), Positives = 125/164 (76%), Gaps = 1/164 (1%)

Query  7    YDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLV  66
            ++W+ +AF++    L +FML VP LLGG+S G  K+E FESGVV AG ARIRLSAKFYLV
Sbjct  5    FNWSALAFILAAIGLVIFMLVVPRLLGGRSQGTEKEEVFESGVVGAGNARIRLSAKFYLV  64

Query  67   AIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWSPSDRR  126
            AIFFV+FDLEALYLYA++ SVREVGW+G+ T +IFVVDLLI LIY  + GAL W+P+D+R
Sbjct  65   AIFFVIFDLEALYLYAYSVSVREVGWIGYATALIFVVDLLIGLIYALSLGALNWAPADKR  124

Query  127  KAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRM  170
            +    +        N+A IT+FN I+EL  DPTG +PAQSSG++
Sbjct  125  RKKE-RLSAAPAGFNLASITKFNGIDELHTDPTGKVPAQSSGQV  167


>Q4FU64 NADH-quinone oxidoreductase subunit A [Psychrobacter arcticus 
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=207

 Score = 189 bits (480),  Expect = 6e-65
 Identities = 92/168 (55%), Positives = 126/168 (75%), Gaps = 3/168 (2%)

Query  4    ITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKF  63
            ++ ++W+ IAF++    L VFML VP LLGG+S G  K+E FE+GVV +G ARIRLSAKF
Sbjct  1    MSAFNWSAIAFILAAIALVVFMLVVPRLLGGRSHGSQKEEIFEAGVVGSGNARIRLSAKF  60

Query  64   YLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWSPS  123
            YLVAIFFV+FDLEALYLYA+A SVRE GW+GF    IF+  L+I L+Y  + GA+ W+P+
Sbjct  61   YLVAIFFVIFDLEALYLYAYAVSVREAGWLGFAAAAIFITILIIGLVYELSLGAMNWAPA  120

Query  124  DR-RKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRM  170
            D+ RK A +         ++A+IT+F+ ++EL++DPTG IPAQSSG++
Sbjct  121  DKLRKKARL--YAAPAGFSLADITKFDGVDELMVDPTGKIPAQSSGQI  166


>Q1QD97 NADH-quinone oxidoreductase subunit A [Psychrobacter cryohalolentis 
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 
/ K5)]
Length=207

 Score = 184 bits (466),  Expect = 8e-63
 Identities = 91/168 (54%), Positives = 125/168 (74%), Gaps = 3/168 (2%)

Query  4    ITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKF  63
            ++ ++ + IAF++    L VFML VP LLGG+S G  K+E FE+GVV +G ARIRLSAKF
Sbjct  1    MSAFNLSAIAFILAAIGLVVFMLVVPRLLGGRSHGSQKEEIFEAGVVGSGNARIRLSAKF  60

Query  64   YLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWSPS  123
            YLVAIFFV+FDLEALYLYA+A SVRE GW+GF    IF+  L+I L+Y  + GA+ W+P+
Sbjct  61   YLVAIFFVIFDLEALYLYAYAVSVREAGWLGFAAAAIFITILIIGLVYELSLGAMNWAPA  120

Query  124  DR-RKAAGIKPKIGSPNMNIAEITRFNSIEELVIDPTGHIPAQSSGRM  170
            D+ RK A +         ++A+IT+F+ ++EL++DPTG IPAQSSG++
Sbjct  121  DKLRKKARL--YAAPAGFSLADITKFDGVDELMVDPTGKIPAQSSGQI  166


>Q3KA63 NADH-quinone oxidoreductase subunit A [Pseudomonas fluorescens 
(strain Pf0-1)]
Length=137

 Score = 155 bits (391),  Expect = 2e-52
 Identities = 69/126 (55%), Positives = 92/126 (73%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML V  LLG K+WGR+K E FESG++  GGAR+RLSA
Sbjct  5    TGLMAHNWGFAIFLLGVVGLCAFMLGVSSLLGSKAWGRSKNEPFESGMLPTGGARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y+F  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLFRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEARRK  130


>Q1I800 NADH-quinone oxidoreductase subunit A [Pseudomonas entomophila 
(strain L48)]
Length=137

 Score = 152 bits (385),  Expect = 2e-51
 Identities = 68/126 (54%), Positives = 91/126 (72%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGRAK E FESG++  G AR+RLSA
Sbjct  5    AGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRAKNEPFESGMLPVGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+LYAW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLYAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEGRRK  130


>B1J6N4 NADH-quinone oxidoreductase subunit A [Pseudomonas putida 
(strain W619)]
Length=137

 Score = 151 bits (381),  Expect = 7e-51
 Identities = 67/126 (53%), Positives = 91/126 (72%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGRAK E FESG++  G AR+RLSA
Sbjct  5    AGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRAKNEPFESGMLPVGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEGRRK  130


>Q88FH7 NADH-quinone oxidoreductase subunit A [Pseudomonas putida 
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 
/ KT2440)]
Length=137

 Score = 151 bits (381),  Expect = 7e-51
 Identities = 67/126 (53%), Positives = 91/126 (72%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGRAK E FESG++  G AR+RLSA
Sbjct  5    AGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRAKNEPFESGMLPVGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEGRRK  130


>B0KMX8 NADH-quinone oxidoreductase subunit A [Pseudomonas putida 
(strain GB-1)]
Length=137

 Score = 151 bits (381),  Expect = 7e-51
 Identities = 67/126 (53%), Positives = 91/126 (72%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGRAK E FESG++  G AR+RLSA
Sbjct  5    AGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRAKNEPFESGMLPVGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEGRRK  130


>A5W192 NADH-quinone oxidoreductase subunit A [Pseudomonas putida 
(strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=137

 Score = 151 bits (381),  Expect = 7e-51
 Identities = 67/126 (53%), Positives = 91/126 (72%), Gaps = 0/126 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGRAK E FESG++  G AR+RLSA
Sbjct  5    AGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRAKNEPFESGMLPVGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRRK  127
            P  RRK
Sbjct  125  PEGRRK  130


>Q4ZRJ3 NADH-quinone oxidoreductase subunit A [Pseudomonas syringae 
pv. syringae (strain B728a)]
Length=137

 Score = 148 bits (373),  Expect = 1e-49
 Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 0/125 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGR+K E FESG++  G AR+RLSA
Sbjct  5    TGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRSKNEPFESGMLPTGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRR  126
            P  RR
Sbjct  125  PEGRR  129


>Q87ZQ9 NADH-quinone oxidoreductase subunit A [Pseudomonas syringae 
pv. tomato (strain ATCC BAA-871 / DC3000)]
Length=137

 Score = 148 bits (373),  Expect = 1e-49
 Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 0/125 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGR+K E FESG++  G AR+RLSA
Sbjct  5    TGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRSKNEPFESGMLPTGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRR  126
            P  RR
Sbjct  125  PEGRR  129


>Q48H54 NADH-quinone oxidoreductase subunit A [Pseudomonas savastanoi 
pv. phaseolicola (strain 1448A / Race 6)]
Length=137

 Score = 148 bits (373),  Expect = 1e-49
 Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 0/125 (0%)

Query  2    SAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSA  61
            + +  ++W    F++GV  LC FML +  LLG K+WGR+K E FESG++  G AR+RLSA
Sbjct  5    TGLIAHNWGFAIFLLGVVGLCAFMLGLSSLLGSKAWGRSKNEPFESGMLPTGSARLRLSA  64

Query  62   KFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            KFYLVA+ FV+FD+EAL+L+AW+ SVRE GW GF   ++F+  LL  L+Y++  GAL W+
Sbjct  65   KFYLVAMLFVIFDIEALFLFAWSVSVRESGWTGFVEALVFIAILLAGLVYLWRVGALDWA  124

Query  122  PSDRR  126
            P  RR
Sbjct  125  PEGRR  129


>O85273 NADH-quinone oxidoreductase subunit A [Pectobacterium 
carotovorum subsp. carotovorum]
Length=146

 Score = 142 bits (358),  Expect = 3e-47
 Identities = 69/119 (58%), Positives = 86/119 (72%), Gaps = 0/119 (0%)

Query  4    ITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKF  63
            I  + WA   F+I    LCVFMLT   LLGG++ GRAK   +ESG+ S G AR+RLSAKF
Sbjct  7    ILAHHWAFGLFLIIAVGLCVFMLTGGFLLGGRAKGRAKNVPYESGIDSVGSARLRLSAKF  66

Query  64   YLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWSP  122
            YLVA+FFV+FD+EALYLYAWA S++E GW+GF    IF++ LL  LIY+   GAL W+P
Sbjct  67   YLVAMFFVIFDVEALYLYAWAVSIKESGWIGFIEATIFILVLLAGLIYLVRVGALDWTP  125


>P0AFC3 NADH-quinone oxidoreductase subunit A [Escherichia coli 
(strain K12)]
Length=147

 Score = 133 bits (335),  Expect = 8e-44
 Identities = 63/124 (51%), Positives = 84/124 (68%), Gaps = 0/124 (0%)

Query  4    ITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKF  63
            +  + WA   F+I    LC  ML     LGG++  R+K   FESG+ S G AR+RLSAKF
Sbjct  9    VIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKF  68

Query  64   YLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWSPS  123
            YLVA+FFV+FD+EALYL+AW+TS+RE GW+GF    IF+  LL  L+Y+   GAL W+P+
Sbjct  69   YLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWTPA  128

Query  124  DRRK  127
              R+
Sbjct  129  RSRR  132


>P19045 NAD(P)H-quinone oxidoreductase subunit 3 [Synechocystis 
sp. (strain PCC 6803 / Kazusa)]
Length=120

 Score = 89.7 bits (221),  Expect = 6e-27
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 9/125 (7%)

Query  1    MSAITPYDWAIIAFVIGVTFLC----VFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGAR  56
            M  +T Y+     + +G  F+C    V  LT   LL  +  G  +Q  +ESG+   GGA 
Sbjct  1    MFVLTGYE-----YFLGFLFICSLVPVLALTASKLLRPRDGGPERQTTYESGMEPIGGAW  55

Query  57   IRLSAKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATG  116
            I+ + ++Y+ A+ FVVFD+E ++LY WA +  ++G + F   +IF+  L++AL+Y +  G
Sbjct  56   IQFNIRYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFVEALIFIAILVVALVYAWRKG  115

Query  117  ALTWS  121
            AL WS
Sbjct  116  ALEWS  120


>Q8DJ02 NAD(P)H-quinone oxidoreductase subunit 3 [Thermosynechococcus 
vestitus (strain NIES-2133 / IAM M-273 / BP-1)]
Length=132

 Score = 80.5 bits (197),  Expect = 3e-23
 Identities = 38/110 (35%), Positives = 65/110 (59%), Gaps = 0/110 (0%)

Query  12   IAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFV  71
            + F+I  + + V  L    LL  KS    +   +ESG+   GGA I+ + ++Y+ A+ FV
Sbjct  23   LGFLIICSLVPVLALAASALLRPKSGRMIRLTTYESGMEPIGGAWIQFNVRYYMFALVFV  82

Query  72   VFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            +FD+E ++LY WA +  ++G + F   +IF+  L++AL+Y +   AL WS
Sbjct  83   IFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKRALEWS  132


>P0A3S5 NAD(P)H-quinone oxidoreductase subunit 3 [Nostoc sp. (strain 
PCC 7120 / SAG 25.82 / UTEX 2576)]
Length=120

 Score = 80.1 bits (196),  Expect = 3e-23
 Identities = 39/121 (32%), Positives = 71/121 (59%), Gaps = 1/121 (1%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            M  ++ Y++ ++ F+I  + +    L+   LL        ++  +ESG+   GGA I+ +
Sbjct  1    MFVLSGYEY-LLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFN  59

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
             ++Y+ A+ FVVFD+E ++LY WA +   +G + F   +IF+  L++AL+Y +  GAL W
Sbjct  60   IRYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEW  119

Query  121  S  121
            S
Sbjct  120  S  120


>P26303 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic 
[Triticum aestivum]
Length=120

 Score = 79.0 bits (193),  Expect = 8e-23
 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 0/108 (0%)

Query  14   FVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVF  73
            F+I  + + +   ++  LL   S G  K   +ESG+   GGA ++   ++Y+ A+ FVVF
Sbjct  13   FLIIASLIPILAFSISGLLAPVSEGPEKLSSYESGIEPMGGAWVQFRIRYYMFALVFVVF  72

Query  74   DLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            D+E ++LY WA S   +G   F   +IFV+ L++ L+Y +  GAL WS
Sbjct  73   DVETVFLYPWAMSFDVLGVSVFIEALIFVLILVVGLVYAWRKGALEWS  120


 Score = 19.6 bits (39),  Expect = 0.44
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  7    YDWAIIAFVIGVTFLCVFMLTVPLLLGG  34
            Y WA+   V+GV+     ++ V +L+ G
Sbjct  80   YPWAMSFDVLGVSVFIEALIFVLILVVG  107


>P19044 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic 
[Zea mays]
Length=120

 Score = 77.4 bits (189),  Expect = 3e-22
 Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 0/108 (0%)

Query  14   FVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVF  73
            F+I  + + + +  +  LL   S G  K   +ESG+   GGA ++   ++Y+ A+ FVVF
Sbjct  13   FLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVF  72

Query  74   DLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTWS  121
            D+E ++LY WA S   +G   F    IFV+ L++ L+Y +  GAL WS
Sbjct  73   DVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS  120


 Score = 20.4 bits (41),  Expect = 0.24
 Identities = 10/28 (36%), Positives = 18/28 (64%), Gaps = 1/28 (4%)

Query  7    YDWAIIAFVIGVT-FLCVFMLTVPLLLG  33
            Y WA+   V+GV+ F+  F+  + L++G
Sbjct  80   YPWAMSFDVLGVSVFIEAFIFVLILVVG  107


>Q36664 NADH-ubiquinone oxidoreductase chain 3 [Pinus sylvestris]
Length=118

 Score = 75.5 bits (184),  Expect = 2e-21
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (1%)

Query  11   IIAFVIGVTFLCVFMLTVPLLLGGK-SWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIF  69
            I  +++    +C+  L VP L     S    K   +E G    G AR R   +FYLV+I 
Sbjct  7    ICIYLVISLLVCLIPLGVPFLFASNGSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSIL  66

Query  70   FVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            F++FDLE  + + WA S+ ++   GF +M++F++ L I  +Y +  GAL W
Sbjct  67   FIIFDLEVTFFFPWAVSLNKIDLFGFWSMMVFLLILTIGFLYEWKKGALDW  117


>Q31792 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic 
[Anthoceros angustus]
Length=120

 Score = 75.5 bits (184),  Expect = 2e-21
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (1%)

Query  1    MSAITPYDWAIIAFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLS  60
            M  ++ Y++  I F++  + +     ++  ++   S G  K   +E G+   G A I+  
Sbjct  1    MFLVSKYNYFWI-FLLIASLIPTIAFSISRVIAPISKGPEKFTSYECGIEPMGDAWIQFQ  59

Query  61   AKFYLVAIFFVVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
             ++Y+ A+ FV+FD+E ++LY WA S +++G   F  + IFV  L+I LIY +  GAL W
Sbjct  60   IRYYMFALVFVIFDVETVFLYPWAMSFKQLGIPAFIEVFIFVFILIIGLIYAWRKGALEW  119

Query  121  S  121
            S
Sbjct  120  S  120


>P18630 NADH-ubiquinone oxidoreductase chain 3 [Oenothera berteroana]
Length=118

 Score = 72.8 bits (177),  Expect = 2e-20
 Identities = 40/110 (36%), Positives = 59/110 (54%), Gaps = 2/110 (2%)

Query  12   IAFVIGVTFLCVFMLTVPLLLGGKSWGRA-KQEQFESGVVSAGGARIRLSAKFYLVAIFF  70
            I+ VI +  L + +L VP L    S     K   +E G    G AR R   +FYLV+I F
Sbjct  9    ISLVISL-LLSLILLVVPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILF  67

Query  71   VVFDLEALYLYAWATSVREVGWMGFTTMVIFVVDLLIALIYVFATGALTW  120
            ++FDLE  + + WA S  ++   GF +M+ F++ L I  +Y +  GAL W
Sbjct  68   IIFDLEVTFFFPWAVSFNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDW  117


 Score = 15.8 bits (29),  Expect = 8.7
 Identities = 4/11 (36%), Positives = 10/11 (91%), Gaps = 0/11 (0%)

Query  9    WAIIAFVIGVT  19
            W+++AF++ +T
Sbjct  93   WSMMAFLLILT  103



Lambda      K        H        a         alpha
   0.327    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432245


  Database: 5d2bd24029648dac14a5afc65f75c1b2.SwissProt.fasta
    Posted date:  May 20, 2024  5:47 PM
  Number of letters in database: 4,034
  Number of sequences in database:  27



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40