BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a653842457c5099d4b093d5691d1b8c1.SwissProt.fasta
9 sequences; 2,573 total letters
Query= ACIAD0769
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
P0A262 Nucleoside-specific channel-forming protein Tsx [Salmonell... 246 4e-85
P0A261 Nucleoside-specific channel-forming protein Tsx [Salmonell... 246 4e-85
P40785 Nucleoside-specific channel-forming protein Tsx [Klebsiell... 233 1e-79
P40786 Nucleoside-specific channel-forming protein Tsx [Klebsiell... 229 3e-78
P0A929 Nucleoside-specific channel-forming protein Tsx [Shigella ... 227 2e-77
P0A928 Nucleoside-specific channel-forming protein Tsx [Escherich... 227 2e-77
P0A927 Nucleoside-specific channel-forming protein Tsx [Escherich... 227 2e-77
P59570 Outer membrane protein OmpK [Vibrio parahaemolyticus serot... 82.8 3e-22
P51002 Outer membrane protein OmpK [Vibrio parahaemolyticus] 80.1 3e-21
>P0A262 Nucleoside-specific channel-forming protein Tsx [Salmonella
typhi]
Length=287
Score = 246 bits (629), Expect = 4e-85
Identities = 121/248 (49%), Positives = 163/248 (66%), Gaps = 5/248 (2%)
Query 35 SNNIKFSPKTVENAYLELEYYGQTGPIDWYGYFDAPKYFG-GNDNIKGVWDKDGSKLFAE 93
S + +FSPK + YLE E + + D+YGY D PK F GN N KG+W DGS LF E
Sbjct 44 SYHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWS-DGSPLFME 102
Query 94 NQPKVSFNRLTGKDLSVGPFKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGM 153
+P+ S ++LTG DLS GPFK+W+FA ++I D G + + Q+T Y GLGT IDT +G+
Sbjct 103 IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPMGL 162
Query 154 NVNVFAKQQWENYGAPNSYTSDDGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGD 213
++NV+AK QW+NYGA N DG R +V++F P+ G L+Y FTN+D+GS LGD
Sbjct 163 SLNVYAKYQWQNYGASNE-NEWDGYRFKVKYFVPITDL-WGGKLSYIGFTNFDWGSDLGD 220
Query 214 KDPNRTNEALVSTHVFSYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGY 273
DPNRT+ ++ S+H+ + N H ARYFHNGGQ+++GA NWG+GDF S GWG
Sbjct 221 -DPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTGWGG 279
Query 274 YVAAGYQF 281
Y+ GY F
Sbjct 280 YLVVGYNF 287
>P0A261 Nucleoside-specific channel-forming protein Tsx [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=287
Score = 246 bits (629), Expect = 4e-85
Identities = 121/248 (49%), Positives = 163/248 (66%), Gaps = 5/248 (2%)
Query 35 SNNIKFSPKTVENAYLELEYYGQTGPIDWYGYFDAPKYFG-GNDNIKGVWDKDGSKLFAE 93
S + +FSPK + YLE E + + D+YGY D PK F GN N KG+W DGS LF E
Sbjct 44 SYHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWS-DGSPLFME 102
Query 94 NQPKVSFNRLTGKDLSVGPFKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGM 153
+P+ S ++LTG DLS GPFK+W+FA ++I D G + + Q+T Y GLGT IDT +G+
Sbjct 103 IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPMGL 162
Query 154 NVNVFAKQQWENYGAPNSYTSDDGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGD 213
++NV+AK QW+NYGA N DG R +V++F P+ G L+Y FTN+D+GS LGD
Sbjct 163 SLNVYAKYQWQNYGASNE-NEWDGYRFKVKYFVPITDL-WGGKLSYIGFTNFDWGSDLGD 220
Query 214 KDPNRTNEALVSTHVFSYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGY 273
DPNRT+ ++ S+H+ + N H ARYFHNGGQ+++GA NWG+GDF S GWG
Sbjct 221 -DPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTGWGG 279
Query 274 YVAAGYQF 281
Y+ GY F
Sbjct 280 YLVVGYNF 287
>P40785 Nucleoside-specific channel-forming protein Tsx [Klebsiella
aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 /
JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006
/ CDC 819-56)]
Length=294
Score = 233 bits (594), Expect = 1e-79
Identities = 123/292 (42%), Positives = 172/292 (59%), Gaps = 16/292 (5%)
Query 3 LKSLSTVFLAATTLLGVQQANADVNATLWGIYSNNI------KFSPKTVENAYLELEYYG 56
L + + V L+A+ G + + W S N+ +F P+ + YLE E +
Sbjct 6 LAASAVVALSASFTAGAAETEKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFA 65
Query 57 QTGPIDWYGYFDAPKYFGGNDNIKGVWDKDGSKLFAENQPKVSFNRLTGKDLSVGPFKDW 116
+ D+YGY DAP +FGGN KG+W+K GS LF E +P+ S ++LT DLS GPFK+W
Sbjct 66 KKDWFDFYGYIDAPVFFGGNSTAKGIWNK-GSPLFMEIEPRFSIDKLTNTDLSFGPFKEW 124
Query 117 FFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMNVNVFAKQQWENYGAPNSYTSDD 176
+FA ++I D G + + Q+T Y GLGT IDT + +++N++AK QW+NYGA N D
Sbjct 125 YFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNIYAKYQWQNYGASNE-NEWD 183
Query 177 GGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDK---DPN----RTNEALVSTHVF 229
G R +V++F PL G SL+Y FTN+D+GS LGD D N RT+ ++ S+H+
Sbjct 184 GYRFKVKYFVPLTDL-WGGSLSYIGFTNFDWGSDLGDDNFYDMNGKHARTSNSIASSHIL 242
Query 230 SYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGYYVAAGYQF 281
+ N H ARYFHNGGQ+ D A N+G+GDF S GWG Y GY F
Sbjct 243 ALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGDFSVRSTGWGGYFVVGYNF 294
>P40786 Nucleoside-specific channel-forming protein Tsx [Klebsiella
pneumoniae]
Length=294
Score = 229 bits (584), Expect = 3e-78
Identities = 122/288 (42%), Positives = 169/288 (59%), Gaps = 16/288 (6%)
Query 7 STVFLAATTLLGVQQANADVNATLWGIYSNNI------KFSPKTVENAYLELEYYGQTGP 60
+ V L+ T G + + + W S N+ +F P+ + YLE E + +
Sbjct 10 AVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDW 69
Query 61 IDWYGYFDAPKYFGGNDNIKGVWDKDGSKLFAENQPKVSFNRLTGKDLSVGPFKDWFFAT 120
D+YGY DAP +FGGN KG+W+K GS LF E +P+ S ++LT DLS GPFK+W+FA
Sbjct 70 FDFYGYIDAPVFFGGNSTAKGIWNK-GSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFAN 128
Query 121 DWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMNVNVFAKQQWENYGAPNSYTSDDGGRL 180
++I D G + + Q+T Y GLGT IDT + +++NV+AK QW+NYGA N DG R
Sbjct 129 NYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYGASNE-NEWDGYRF 187
Query 181 QVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDK---DPN----RTNEALVSTHVFSYNM 233
+V++F PL G SL+Y FTN+D+GS LGD D N RT+ ++ S+H+ + N
Sbjct 188 KVKYFVPLTDL-WGGSLSYIGFTNFDWGSDLGDDNFYDLNGKHARTSNSIASSHILALNY 246
Query 234 KHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGYYVAAGYQF 281
H ARYFHNGGQ+ D A N+G+G F S GWG Y GY F
Sbjct 247 AHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294
>P0A929 Nucleoside-specific channel-forming protein Tsx [Shigella
flexneri]
Length=294
Score = 227 bits (579), Expect = 2e-77
Identities = 111/254 (44%), Positives = 158/254 (62%), Gaps = 10/254 (4%)
Query 35 SNNIKFSPKTVENAYLELEYYGQTGPIDWYGYFDAPKYFGGNDNIKGVWDKDGSKLFAEN 94
S + +F P+ + YLE E + + D+YGY DAP +FGGN + KG+W+ GS LF E
Sbjct 44 SYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNH-GSPLFMEI 102
Query 95 QPKVSFNRLTGKDLSVGPFKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMN 154
+P+ S ++LT DLS GPFK+W+FA ++I D G + + Q+T Y GLGT IDT + ++
Sbjct 103 EPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLS 162
Query 155 VNVFAKQQWENYGAPNSYTSDDGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDK 214
+NV+AK QW+NYGA N DG R ++++F P+ G L+Y FTN+D+GS LGD
Sbjct 163 MNVYAKYQWQNYGAANE-NEWDGYRFKIKYFVPITDL-WGGQLSYIGFTNFDWGSDLGDD 220
Query 215 DPN-------RTNEALVSTHVFSYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQN 267
N RTN ++ S+H+ + N H ARY+H+GGQ+ D A N+GNG+F
Sbjct 221 SGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVR 280
Query 268 SNGWGYYVAAGYQF 281
S GWG Y+ GY F
Sbjct 281 STGWGGYLVVGYNF 294
>P0A928 Nucleoside-specific channel-forming protein Tsx [Escherichia
coli O157:H7]
Length=294
Score = 227 bits (579), Expect = 2e-77
Identities = 111/254 (44%), Positives = 158/254 (62%), Gaps = 10/254 (4%)
Query 35 SNNIKFSPKTVENAYLELEYYGQTGPIDWYGYFDAPKYFGGNDNIKGVWDKDGSKLFAEN 94
S + +F P+ + YLE E + + D+YGY DAP +FGGN + KG+W+ GS LF E
Sbjct 44 SYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNH-GSPLFMEI 102
Query 95 QPKVSFNRLTGKDLSVGPFKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMN 154
+P+ S ++LT DLS GPFK+W+FA ++I D G + + Q+T Y GLGT IDT + ++
Sbjct 103 EPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLS 162
Query 155 VNVFAKQQWENYGAPNSYTSDDGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDK 214
+NV+AK QW+NYGA N DG R ++++F P+ G L+Y FTN+D+GS LGD
Sbjct 163 MNVYAKYQWQNYGAANE-NEWDGYRFKIKYFVPITDL-WGGQLSYIGFTNFDWGSDLGDD 220
Query 215 DPN-------RTNEALVSTHVFSYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQN 267
N RTN ++ S+H+ + N H ARY+H+GGQ+ D A N+GNG+F
Sbjct 221 SGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVR 280
Query 268 SNGWGYYVAAGYQF 281
S GWG Y+ GY F
Sbjct 281 STGWGGYLVVGYNF 294
>P0A927 Nucleoside-specific channel-forming protein Tsx [Escherichia
coli (strain K12)]
Length=294
Score = 227 bits (579), Expect = 2e-77
Identities = 111/254 (44%), Positives = 158/254 (62%), Gaps = 10/254 (4%)
Query 35 SNNIKFSPKTVENAYLELEYYGQTGPIDWYGYFDAPKYFGGNDNIKGVWDKDGSKLFAEN 94
S + +F P+ + YLE E + + D+YGY DAP +FGGN + KG+W+ GS LF E
Sbjct 44 SYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNH-GSPLFMEI 102
Query 95 QPKVSFNRLTGKDLSVGPFKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMN 154
+P+ S ++LT DLS GPFK+W+FA ++I D G + + Q+T Y GLGT IDT + ++
Sbjct 103 EPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLS 162
Query 155 VNVFAKQQWENYGAPNSYTSDDGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDK 214
+NV+AK QW+NYGA N DG R ++++F P+ G L+Y FTN+D+GS LGD
Sbjct 163 MNVYAKYQWQNYGAANE-NEWDGYRFKIKYFVPITDL-WGGQLSYIGFTNFDWGSDLGDD 220
Query 215 DPN-------RTNEALVSTHVFSYNMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQN 267
N RTN ++ S+H+ + N H ARY+H+GGQ+ D A N+GNG+F
Sbjct 221 SGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVR 280
Query 268 SNGWGYYVAAGYQF 281
S GWG Y+ GY F
Sbjct 281 STGWGGYLVVGYNF 294
>P59570 Outer membrane protein OmpK [Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633)]
Length=266
Score = 82.8 bits (203), Expect = 3e-22
Identities = 77/290 (27%), Positives = 136/290 (47%), Gaps = 37/290 (13%)
Query 2 SLKSLSTVFLAATTLLGVQQANADVNATLWGIYSNNIKFS----PKTVENAYLELEYYGQ 57
SL +LS + + +L ++ D++ + N+ + P + YLE+E+ G+
Sbjct 4 SLLALSLLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAFDELPGESSHDYLEMEFGGR 63
Query 58 TGPIDWYGYFDAPKYFGGNDNIKGVWDKDGS-KLFAENQPKVSFNRLTGKDLSVGPFKDW 116
+G D YGY D + DK G K+F + P++S + LTGKDLS GP ++
Sbjct 64 SGIFDLYGYVDVFNLASDKGS-----DKVGDPKIFMKFAPRMSIDGLTGKDLSFGPVQEL 118
Query 117 FFATDWIVDAGGHSNN--SQNTLYYGLGTS--IDTHTKLGMNVNVFAKQQWENYGAPNSY 172
+ AT + D + N S N G+G+ + K+G+N+ YG
Sbjct 119 YVATLFEWDGTDYKTNPFSVNNQKVGIGSDVMVPWFGKVGVNL----------YGTYQGN 168
Query 173 TSD-DGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDKDPNRTNEALVSTHVFSY 231
D +G ++ +F P Y F NG+ ++Y + +Y FG K +K + +N + ++ +
Sbjct 169 QKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMK--EKYSSASNGGAMFNGIYWH 226
Query 232 NMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGYYVAAGYQF 281
+ + A Y G +KD + + D ++ S G+G+YVA Y+F
Sbjct 227 SDRF-----AVGYGLKG--YKD--VYGIKDSDALK-STGFGHYVAVTYKF 266
>P51002 Outer membrane protein OmpK [Vibrio parahaemolyticus]
Length=263
Score = 80.1 bits (196), Expect = 3e-21
Identities = 73/290 (25%), Positives = 135/290 (47%), Gaps = 40/290 (14%)
Query 2 SLKSLSTVFLAATTLLGVQQANADVNAT--------LWGIYSNNIKFSPKTVENAYLELE 53
SL +LS + + +L ++ D++ L G + N + P + YLE+E
Sbjct 4 SLLALSLLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAF-NELPGFPDGSNHDYLEME 62
Query 54 YYGQTGPIDWYGYFDAPKYFGGNDNIKGVWDKDGS-KLFAENQPKVSFNRLTGKDLSVGP 112
+ G++G D YGY D + DK G K+F + P++S + +TGKDLS GP
Sbjct 63 FGGRSGIFDLYGYVDVFNLASDPGS-----DKSGKEKIFMKFAPRMSLDAVTGKDLSFGP 117
Query 113 FKDWFFATDWIVDAGGHSNNSQNTLYYGLGTSIDTHTKLGMNVNVFAKQQWENYGAPNSY 172
++ + +T +++ GG S + + G + K+G+N+ YG +S
Sbjct 118 VQELYVST--LMEWGGASEVNSQKIGLGSDVMVPWLGKIGLNL----------YGTYDSN 165
Query 173 TSD-DGGRLQVQFFYPLYSFNNGASLNYFTFTNYDFGSKLGDKDPNRTNEALVSTHVFSY 231
D +G ++ +F P Y F NG+ ++Y + ++ FG K D+ + + + ++ +
Sbjct 166 KKDWNGYQISTNWFKPFYFFENGSFISYQGYIDWQFGMK--DEYSSSSYGGAMFNGIYWH 223
Query 232 NMKHLRLFTAARYFHNGGQFKDGAIANWGNGDFVQNSNGWGYYVAAGYQF 281
+ + A Y G +K+ NG +S G+G+Y+A Y+F
Sbjct 224 SDRF-----AVGYGLKG--YKNIYGIKEVNG---VDSTGFGHYIAVTYKF 263
Lambda K H a alpha
0.319 0.137 0.437 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 531164
Database: a653842457c5099d4b093d5691d1b8c1.SwissProt.fasta
Posted date: Jun 1, 2024 2:25 PM
Number of letters in database: 2,573
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
