BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 52b99562534c195becf00584bdbcfebb.SwissProt.fasta
7 sequences; 1,885 total letters
Query= ACIAD0826
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
P44475 Cell shape-determining protein MreC [Haemophilus influenza... 163 5e-52
P16926 Cell shape-determining protein MreC [Escherichia coli (str... 150 6e-47
Q70AN6 Cell shape-determining protein MreC [Cereibacter sphaeroides] 80.5 3e-21
B8H610 Cell shape-determining protein MreC [Caulobacter vibrioide... 76.3 1e-19
Q8Y6Y4 Cell shape-determining protein MreC [Listeria monocytogene... 69.7 2e-17
O24700 Large ribosomal subunit protein uL24 [Synechococcus sp. (s... 35.4 1e-06
Q31L18 Large ribosomal subunit protein uL24 [Synechococcus elonga... 35.4 1e-06
>P44475 Cell shape-determining protein MreC [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=351
Score = 163 bits (413), Expect = 5e-52
Identities = 96/272 (35%), Positives = 154/272 (57%), Gaps = 1/272 (0%)
Query 5 LFSRQPPSFRSFIIAVITSLVVLFFNWRMPHVIQPARDVLYAAYNPIYALASYPVLSREW 64
+F + PP +IA+ S+ ++ + R + + AR + A +Y LA+ P +
Sbjct 4 IFGKAPPLGIRLLIAIFASIALILADGRNSSITK-ARSAMETAIGGLYYLANSPRSILDG 62
Query 65 LNQQTKSEAQLRRENTAMQAELLQAQVRFQKLSELSAENTRLRGLLDTPLIIDGRMEIAE 124
+++ +L+ EN ++ +LL+ L +L EN RLR LL++PL D +IAE
Sbjct 63 ISENLVDTNKLQIENKVLRQQLLEKNADLLLLDQLKVENQRLRLLLNSPLRTDEYKKIAE 122
Query 125 VIGTDADPLRHIIIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVMLLSDKDHSLS 184
V+ + D R I+IN+G + VGQ V+D+KG++GQII+V ++SRV+LL+D HS+
Sbjct 123 VLTAETDIYRQQIVINQGKKDGAYVGQPVIDEKGVIGQIISVGENTSRVLLLTDVTHSIP 182
Query 185 VRLERTGMRAIVSGTGDLGRLKMEYVPTSANIQVGDKVFSSGLGEHFPAGYLVGTVSKVR 244
V++ R +R I SGTG L ++ VP S +I+ GD + +SGLG F GY V V V
Sbjct 183 VQVLRNDVRVIASGTGHTDELSLDNVPRSVDIEKGDLLVTSGLGGRFLEGYPVAVVQSVS 242
Query 245 RQNSGEFAEIDVTPAAQLASGHHVVVLFSDSL 276
R +S FA + P A L +V++L+ +L
Sbjct 243 RDSSNYFAIVKAKPLALLERLRYVLLLWPSNL 274
>P16926 Cell shape-determining protein MreC [Escherichia coli
(strain K12)]
Length=367
Score = 150 bits (380), Expect = 6e-47
Identities = 89/268 (33%), Positives = 148/268 (55%), Gaps = 1/268 (0%)
Query 5 LFSRQPPSFRSFIIAVITSLVVLFFNWRMPHVIQPARDVLYAAYNPIYALASYPVLSREW 64
+FSR P I+AV+ +L ++ + R+ Q R + A +P Y +++ P +
Sbjct 4 IFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQ-IRTYMDTAVSPFYFVSNAPRELLDG 62
Query 65 LNQQTKSEAQLRRENTAMQAELLQAQVRFQKLSELSAENTRLRGLLDTPLIIDGRMEIAE 124
++Q S QL EN A++ ELL L + EN RLR LL +PL D + + +
Sbjct 63 VSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMVTQ 122
Query 125 VIGTDADPLRHIIIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVMLLSDKDHSLS 184
VI T DP ++I++G+ N + GQ V+ DKG++GQ++ V +SRV+L+ D H+L
Sbjct 123 VISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHALP 182
Query 185 VRLERTGMRAIVSGTGDLGRLKMEYVPTSANIQVGDKVFSSGLGEHFPAGYLVGTVSKVR 244
+++ R +R I +G G L++E++P + +I+VGD + +SGLG FP GY V VS V+
Sbjct 183 IQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSSVK 242
Query 245 RQNSGEFAEIDVTPAAQLASGHHVVVLF 272
+ I P A L ++++L+
Sbjct 243 LDTQRAYTVIQARPTAGLQRLRYLLLLW 270
>Q70AN6 Cell shape-determining protein MreC [Cereibacter sphaeroides]
Length=300
Score = 80.5 bits (197), Expect = 3e-21
Identities = 61/242 (25%), Positives = 115/242 (48%), Gaps = 4/242 (2%)
Query 2 QPNLFSRQPPSFRSFIIAVITSLVVLFFNWRMPHV-IQPARDVLYAAYNPIYALASYPVL 60
+P F+R P R + ++ L+ +F WR+ ++ R L P + P+
Sbjct 7 RPEDFTR--PLRRILVGGLVLLLLGIFLIWRIDSPRVEQFRAALIDRVVPSFEWLMTPMT 64
Query 61 SREWLNQQTKSEAQLRRENTAMQAELLQAQVRFQKLSELSAENTRLRGLLDTPLIIDGRM 120
+ + +S ++ +N ++ EL Q + + +L +N RL L L
Sbjct 65 KVAGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLTH 124
Query 121 EIAEVIGTDADPLRHIIIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVMLLSDKD 180
V+ P R +++N GA + ++ G +D G++G+I V +SRV+LL+D
Sbjct 125 VTGVVLADSGSPFRQSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVILLTDTS 184
Query 181 HSLSVRLERTGMRAIVSGTGDLGRLKMEYVPTSANIQVGDKVFSSGLGEHFPAGYLVGTV 240
+ V ++ +G RA+++G +E++ ++ GD+V +SG G FPA LVG V
Sbjct 185 SRIPVTVQPSGQRALLTGDNSPSP-PLEFLDKPDLVRPGDRVVTSGDGGVFPADLLVGQV 243
Query 241 SK 242
++
Sbjct 244 AQ 245
>B8H610 Cell shape-determining protein MreC [Caulobacter vibrioides
(strain NA1000 / CB15N)]
Length=346
Score = 76.3 bits (186), Expect = 1e-19
Identities = 51/165 (31%), Positives = 83/165 (50%), Gaps = 1/165 (1%)
Query 78 ENTAMQAELLQAQVRFQKLSELSAENTRLRGLLDTPLIIDGRMEIAEVIGTDADPLRHII 137
EN ++AEL + + + L +N R + LL M A V+ P +
Sbjct 88 ENRRLKAELAEMRQWRDRALALQDQNDRFKSLLGLRTDPPIPMAAARVVSDSRGPFANTR 147
Query 138 IINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVMLLSDKDHSLSVRLERTGMRAIVS 197
+ + G+ + VG VL+++G++G+++ V SRV+LL+D V ++RT RAI++
Sbjct 148 LADAGSERGIVVGNPVLNERGLVGRVVGVSRGVSRVLLLTDIASRTPVMIDRTNARAILT 207
Query 198 GTGDLGRLKMEYVPTSANIQVGDKVFSSGLGEHFPAGYLVGTVSK 242
G G K++Y+ IQ GD+V +SG G P G VG K
Sbjct 208 GDGG-PNPKLDYLRGVDPIQQGDRVVTSGDGGVVPRGLPVGAAVK 251
>Q8Y6Y4 Cell shape-determining protein MreC [Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e)]
Length=295
Score = 69.7 bits (169), Expect = 2e-17
Identities = 55/199 (28%), Positives = 91/199 (46%), Gaps = 5/199 (3%)
Query 78 ENTAMQAELLQAQVRFQKLSELSAENTRLRGLLD-TPLIIDGRMEIAEVIGTDADPLRHI 136
EN ++ L + ++++L EN L+ LD T I D A VI +
Sbjct 75 ENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYDPLNASVISRNPTNWNDQ 134
Query 137 IIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVMLLSDKDHSLSVRLERTGMR--- 193
+ I++G+++ +K V G++G++ S+ V LL+ D V + G
Sbjct 135 VEIDKGSSDGVKPDMAVTTPSGLIGKVTTTGAKSATVELLTSSDVKNRVSAKVQGKENAF 194
Query 194 AIVSG-TGDLGRLKMEYVPTSANIQVGDKVFSSGLGEHFPAGYLVGTVSKVRRQNSGEFA 252
I++G D L+++ +P + G KV +SGLG FPAG +GT+ KV G
Sbjct 195 GIINGYDSDTKLLELKQLPYDMKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQ 254
Query 253 EIDVTPAAQLASGHHVVVL 271
+ P A + +HV VL
Sbjct 255 TAFIKPGADMYDLNHVTVL 273
Score = 18.1 bits (35), Expect = 1.5
Identities = 6/17 (35%), Positives = 9/17 (53%), Gaps = 0/17 (0%)
Query 127 GTDADPLRHIIIINRGA 143
G D L H+ ++ R A
Sbjct 261 GADMYDLNHVTVLKRSA 277
>O24700 Large ribosomal subunit protein uL24 [Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1)]
Length=113
Score = 35.4 bits (80), Expect = 1e-06
Identities = 15/44 (34%), Positives = 29/44 (66%), Gaps = 4/44 (9%)
Query 132 PLRHIIIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVML 175
P+RH + + +G Q+ G+ DKG +G+++ V+P +SRV++
Sbjct 6 PVRHSVHVKKGDTVQVIAGK----DKGTVGEVLQVFPKTSRVLV 45
Score = 18.1 bits (35), Expect = 1.1
Identities = 12/46 (26%), Positives = 22/46 (48%), Gaps = 4/46 (9%)
Query 150 GQTVLDDKGIMGQIINVYPHS----SRVMLLSDKDHSLSVRLERTG 191
GQ V+++ I + +Y + SRV +D +L++TG
Sbjct 64 GQIVVEEASIHSSNVQLYSTTQKVASRVAYTFTEDGRKVRKLKKTG 109
>Q31L18 Large ribosomal subunit protein uL24 [Synechococcus elongatus
(strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=113
Score = 35.4 bits (80), Expect = 1e-06
Identities = 15/44 (34%), Positives = 29/44 (66%), Gaps = 4/44 (9%)
Query 132 PLRHIIIINRGANNQLKVGQTVLDDKGIMGQIINVYPHSSRVML 175
P+RH + + +G Q+ G+ DKG +G+++ V+P +SRV++
Sbjct 6 PVRHSVHVKKGDTVQVIAGK----DKGTVGEVLQVFPKTSRVLV 45
Score = 18.1 bits (35), Expect = 1.1
Identities = 12/46 (26%), Positives = 22/46 (48%), Gaps = 4/46 (9%)
Query 150 GQTVLDDKGIMGQIINVYPHS----SRVMLLSDKDHSLSVRLERTG 191
GQ V+++ I + +Y + SRV +D +L++TG
Sbjct 64 GQIVVEEASIHSSNVQLYSTTQKVASRVAYTFTEDGRKVRKLKKTG 109
Lambda K H a alpha
0.322 0.136 0.390 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 398164
Database: 52b99562534c195becf00584bdbcfebb.SwissProt.fasta
Posted date: May 31, 2024 10:34 AM
Number of letters in database: 1,885
Number of sequences in database: 7
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
