BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: c57b85661527366a617d534e73906fd1.SwissProt.fasta
           4 sequences; 648 total letters



Query= ACIAD0828

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ABH5 Rod shape-determining protein MreD [Escherichia coli O6:H1...  58.5    8e-16
P0ABH6 Rod shape-determining protein MreD [Escherichia coli O157:H7]  58.5    8e-16
P0ABH4 Rod shape-determining protein MreD [Escherichia coli (stra...  58.5    8e-16
P44476 Rod shape-determining protein MreD [Haemophilus influenzae...  54.7    2e-14


>P0ABH5 Rod shape-determining protein MreD [Escherichia coli O6:H1 
(strain CFT073 / ATCC 700928 / UPEC)]
Length=162

 Score = 58.5 bits (140),  Expect = 8e-16
 Identities = 35/147 (24%), Positives = 70/147 (48%), Gaps = 2/147 (1%)

Query  1    VIVLSIIIGSVLMVYPLSYDVSGWRPLFMFMIMLFWVLCQPTWCGVWFAFGVGIFNDLLL  60
            VI LS +I  +L + P   ++  +RP ++ +I+L+W+L  P    V   F +G   DL+ 
Sbjct  11   VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS  70

Query  61   DAPLGLNALSFVLITFFTRYLTRERRILTFW-NIWTLAALAILAHLFFIWFAQSLGDIRF  119
             + LG+  L+  +I +      +  R L  W     +  L+++  +   W    + ++ F
Sbjct  71   GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF  130

Query  120  SLARHWQPLLTSILCWPLVYYCLKKWR  146
                 W  ++  +L WP ++  ++K R
Sbjct  131  RPEVFWSSVVNGVL-WPWIFLLMRKVR  156


>P0ABH6 Rod shape-determining protein MreD [Escherichia coli O157:H7]
Length=162

 Score = 58.5 bits (140),  Expect = 8e-16
 Identities = 35/147 (24%), Positives = 70/147 (48%), Gaps = 2/147 (1%)

Query  1    VIVLSIIIGSVLMVYPLSYDVSGWRPLFMFMIMLFWVLCQPTWCGVWFAFGVGIFNDLLL  60
            VI LS +I  +L + P   ++  +RP ++ +I+L+W+L  P    V   F +G   DL+ 
Sbjct  11   VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS  70

Query  61   DAPLGLNALSFVLITFFTRYLTRERRILTFW-NIWTLAALAILAHLFFIWFAQSLGDIRF  119
             + LG+  L+  +I +      +  R L  W     +  L+++  +   W    + ++ F
Sbjct  71   GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF  130

Query  120  SLARHWQPLLTSILCWPLVYYCLKKWR  146
                 W  ++  +L WP ++  ++K R
Sbjct  131  RPEVFWSSVVNGVL-WPWIFLLMRKVR  156


>P0ABH4 Rod shape-determining protein MreD [Escherichia coli (strain 
K12)]
Length=162

 Score = 58.5 bits (140),  Expect = 8e-16
 Identities = 35/147 (24%), Positives = 70/147 (48%), Gaps = 2/147 (1%)

Query  1    VIVLSIIIGSVLMVYPLSYDVSGWRPLFMFMIMLFWVLCQPTWCGVWFAFGVGIFNDLLL  60
            VI LS +I  +L + P   ++  +RP ++ +I+L+W+L  P    V   F +G   DL+ 
Sbjct  11   VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS  70

Query  61   DAPLGLNALSFVLITFFTRYLTRERRILTFW-NIWTLAALAILAHLFFIWFAQSLGDIRF  119
             + LG+  L+  +I +      +  R L  W     +  L+++  +   W    + ++ F
Sbjct  71   GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF  130

Query  120  SLARHWQPLLTSILCWPLVYYCLKKWR  146
                 W  ++  +L WP ++  ++K R
Sbjct  131  RPEVFWSSVVNGVL-WPWIFLLMRKVR  156


>P44476 Rod shape-determining protein MreD [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=162

 Score = 54.7 bits (130),  Expect = 2e-14
 Identities = 42/153 (27%), Positives = 73/153 (48%), Gaps = 16/153 (10%)

Query  2    IVLSIIIGSVLMVYPLSYDVSGWRPLFMFMIMLFWVLCQPTWCGVWFAFGVGIFNDLLLD  61
            I+   +I  VL + P        +P ++ +++L+WVL  P    + ++F +G+  DL+L 
Sbjct  12   ILSFFVIAFVLELAPWPVGFQMLKPAWLVLVLLYWVLAIPNKVSIGWSFLLGLTWDLILG  71

Query  62   APLGLNA--LSFVLITFFTRYLTRERRILTFWNIWTLAALAILAHLFFIWFAQSLGDIRF  119
            + LG++A  LS  +      YL      L F ++  +  + I+  L F+        + F
Sbjct  72   STLGVHALVLSTSMYIIAKNYLILRNLSLWFQSLLVVLFVFIIRLLIFL--------VEF  123

Query  120  SLAR---HWQPLL---TSILCWPLVYYCLKKWR  146
            SL     HWQ +L    S L WP V+  ++K R
Sbjct  124  SLHTAFFHWQAILGAFASGLLWPWVFLLMRKIR  156


 Score = 15.0 bits (27),  Expect = 2.1
 Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)

Query  78  TRYLTRERRILTFWNIWTLAALA  100
           TR++ +   IL+F+ I  +  LA
Sbjct  3   TRFILQWFTILSFFVIAFVLELA  25



Lambda      K        H        a         alpha
   0.341    0.150    0.559    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66368


  Database: c57b85661527366a617d534e73906fd1.SwissProt.fasta
    Posted date:  Jun 1, 2024  9:51 PM
  Number of letters in database: 648
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40