BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b45cf272bcc43666fc2a99f23daf58f5.SwissProt.fasta
15 sequences; 5,386 total letters
Query= ACIAD0898
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
P37665 Probable lipoprotein YiaD [Escherichia coli (strain K12)] 177 3e-59
P9WIU4 Peptidoglycan-binding protein ArfA [Mycobacterium tubercul... 100 1e-28
P65594 Peptidoglycan-binding protein ArfA [Mycobacterium bovis (s... 100 1e-28
P9WIU5 Peptidoglycan-binding protein ArfA [Mycobacterium tubercul... 100 1e-28
A1KH31 Peptidoglycan-binding protein ArfA [Mycobacterium bovis (s... 100 1e-28
Q05146 Outer membrane protein A [Bordetella avium] 88.6 3e-25
P37726 Outer membrane porin F [Pseudomonas fluorescens] 89.7 1e-24
P13794 Outer membrane porin F [Pseudomonas aeruginosa (strain ATC... 87.4 1e-23
P22263 Outer membrane porin F [Pseudomonas syringae pv. syringae] 86.3 3e-23
Q7NFT5 Photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacte... 86.7 5e-23
P43840 Outer membrane protein P5 [Haemophilus influenzae (strain ... 83.2 4e-22
P38368 Outer membrane protein P5 [Haemophilus influenzae] 83.2 4e-22
A3M8K2 Outer membrane protein Omp38 [Acinetobacter baumannii (str... 82.8 5e-22
Q6RYW5 Outer membrane protein Omp38 [Acinetobacter baumannii (str... 82.8 5e-22
P45996 Outer membrane protein P5 [Haemophilus influenzae] 80.9 2e-21
>P37665 Probable lipoprotein YiaD [Escherichia coli (strain K12)]
Length=219
Score = 177 bits (448), Expect = 3e-59
Identities = 102/215 (47%), Positives = 137/215 (64%), Gaps = 5/215 (2%)
Query 2 RALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNNR 61
R +I VV A+A++GC TT G E K+A+G +G+ G GI S++ +
Sbjct 4 RVYLIAAVVSGALAVSGC-TTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKG 62
Query 62 A---AAIGAILGGASGLYLDQKEKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKS 118
A AA GA LGG G Y+D +E KLR +M GTGV V R+ D + L MP N+TFD++ +
Sbjct 63 ALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNII-LNMPNNVTFDSSSA 121
Query 119 NIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSVANYLSGQGV 178
+KP +TL VA L E K+A+ V GYTD+TG +N+ LSQ RA SVA+ L QGV
Sbjct 122 TLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGV 181
Query 179 SSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
+SRI QG G +NPIASN+TA+G+ QNRRVEI++
Sbjct 182 DASRIRTQGLGPANPIASNSTAEGKAQNRRVEITL 216
>P9WIU4 Peptidoglycan-binding protein ArfA [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=326
Score = 100 bits (249), Expect = 1e-28
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 0/112 (0%)
Query 102 SVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPL 161
++ V G I F + +++ P Y LN+VA L + + + GYTDNTG++ INIPL
Sbjct 214 AINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPL 273
Query 162 SQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
S RA+ VA+YL +GV+ I G GS NPIASNAT +GR +NRRVEI +
Sbjct 274 SAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>P65594 Peptidoglycan-binding protein ArfA [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=326
Score = 100 bits (249), Expect = 1e-28
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 0/112 (0%)
Query 102 SVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPL 161
++ V G I F + +++ P Y LN+VA L + + + GYTDNTG++ INIPL
Sbjct 214 AINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPL 273
Query 162 SQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
S RA+ VA+YL +GV+ I G GS NPIASNAT +GR +NRRVEI +
Sbjct 274 SAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>P9WIU5 Peptidoglycan-binding protein ArfA [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=326
Score = 100 bits (249), Expect = 1e-28
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 0/112 (0%)
Query 102 SVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPL 161
++ V G I F + +++ P Y LN+VA L + + + GYTDNTG++ INIPL
Sbjct 214 AINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPL 273
Query 162 SQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
S RA+ VA+YL +GV+ I G GS NPIASNAT +GR +NRRVEI +
Sbjct 274 SAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>A1KH31 Peptidoglycan-binding protein ArfA [Mycobacterium bovis
(strain BCG / Pasteur 1173P2)]
Length=326
Score = 100 bits (249), Expect = 1e-28
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 0/112 (0%)
Query 102 SVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPL 161
++ V G I F + +++ P Y LN+VA L + + + GYTDNTG++ INIPL
Sbjct 214 AINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPL 273
Query 162 SQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
S RA+ VA+YL +GV+ I G GS NPIASNAT +GR +NRRVEI +
Sbjct 274 SAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
>Q05146 Outer membrane protein A [Bordetella avium]
Length=194
Score = 88.6 bits (218), Expect = 3e-25
Identities = 47/109 (43%), Positives = 66/109 (61%), Gaps = 0/109 (0%)
Query 105 LVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQA 164
+V + FD +KS +KP L++VAQ + I+ G TD+ G ++ N+ LS+
Sbjct 81 VVFNADTFFDFDKSTLKPEGRQLLDQVAQQARAIDLETIIAVGNTDSIGTEAYNMKLSER 140
Query 165 RAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
RA SV YL +G+ +RI +G G NPIASN TA+GR +NRRVEI I
Sbjct 141 RAASVKAYLVSKGIDPNRIYTEGKGKLNPIASNKTAEGRARNRRVEIEI 189
Score = 17.3 bits (33), Expect = 5.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 0/34 (0%)
Query 36 LGTLIGAAAGYGISKSSANSSRQNNRAAAIGAIL 69
L T+I I + N RAA++ A L
Sbjct 116 LETIIAVGNTDSIGTEAYNMKLSERRAASVKAYL 149
>P37726 Outer membrane porin F [Pseudomonas fluorescens]
Length=326
Score = 89.7 bits (221), Expect = 1e-24
Identities = 47/104 (45%), Positives = 63/104 (61%), Gaps = 0/104 (0%)
Query 110 NITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSV 169
++ FD +KS +KPN Y + +A +A+ + + V G+TD+ G D+ N LSQ RA V
Sbjct 218 DVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSIGPDAYNQKLSQRRADRV 277
Query 170 ANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
L GV+ SRI A GYG S P+A NAT GR NRRVE S+
Sbjct 278 KQVLVKDGVAPSRITAVGYGESRPVADNATEAGRAVNRRVEASV 321
>P13794 Outer membrane porin F [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=350
Score = 87.4 bits (215), Expect = 1e-23
Identities = 55/185 (30%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query 46 YGISKSSANSSRQNNRAAAIGAILGGASGLYLDQKEKKLRQQMAGTGV--EVNRNPDGSV 103
YG+ K + +G GG+ + + GV V++ PD
Sbjct 161 YGLEKRDNGHQGEWMAGLGVGFNFGGSKAAPAPEPVADVCSDSDNDGVCDNVDKCPDTPA 220
Query 104 GLVMPGN--------------ITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYT 149
+ + N + FD +KS +K N Y+ + +A + + ++ V G+T
Sbjct 221 NVTVDANGCPAVAEVVRVQLDVKFDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHT 280
Query 150 DNTGNDSINIPLSQARAQSVANYLSGQ-GVSSSRINAQGYGSSNPIASNATAQGREQNRR 208
D+ G D+ N LS+ RA +V + L + GV R+NA GYG S P+A NATA+GR NRR
Sbjct 281 DSVGTDAYNQKLSERRANAVRDVLVNEYGVEGGRVNAVGYGESRPVADNATAEGRAINRR 340
Query 209 VEISI 213
VE +
Sbjct 341 VEAEV 345
Score = 18.9 bits (37), Expect = 1.7
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query 149 TDNTGNDSINIPLSQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQ 205
T TGN ++ L+ A + GV + G N N+ +QGR+Q
Sbjct 80 TYETGNKKVHGNLTSLDA---IYHFGTPGVGLRPYVSAGLAHQNITNINSDSQGRQQ 133
>P22263 Outer membrane porin F [Pseudomonas syringae pv. syringae]
Length=344
Score = 86.3 bits (212), Expect = 3e-23
Identities = 44/105 (42%), Positives = 64/105 (61%), Gaps = 1/105 (1%)
Query 110 NITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSV 169
++ FD +KS +KPN Y + +A + + ++ V G+TD+ G D+ N LS+ RA +V
Sbjct 235 DVKFDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRANAV 294
Query 170 ANYLSGQ-GVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
L Q GV +SR+N+ GYG S P+A NAT GR NRRVE +
Sbjct 295 KQVLVNQYGVGASRVNSVGYGESKPVADNATEAGRAVNRRVEAEV 339
>Q7NFT5 Photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacter
violaceus (strain ATCC 29082 / PCC 7421)]
Length=872
Score = 86.7 bits (213), Expect = 5e-23
Identities = 49/135 (36%), Positives = 74/135 (55%), Gaps = 7/135 (5%)
Query 86 QQMAGTGVEVNRNP-DGSVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAIL 144
+Q G E P G V L++P NI FD +KS++K + LN+V + +
Sbjct 730 EQAKGVLSEFKAKPVPGGVMLLLPENIVFDFDKSSVKLDADPALNRVVGVIQFYGSEPVE 789
Query 145 VTGYTDNTGNDSINIPLSQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNA------ 198
+ G+TD+ G D+ N LS+ RA +V + +G+ + R+ A+GYG + P+A NA
Sbjct 790 ILGHTDSLGEDAYNQKLSEERASAVKAFFEKKGIEAERLTAKGYGETKPVAPNAKPDGSD 849
Query 199 TAQGREQNRRVEISI 213
GR+QNRRVEI I
Sbjct 850 NPDGRQQNRRVEILI 864
>P43840 Outer membrane protein P5 [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=353
Score = 83.2 bits (204), Expect = 4e-22
Identities = 43/113 (38%), Positives = 70/113 (62%), Gaps = 9/113 (8%)
Query 110 NITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSV 169
++TF K+N+KP +TL+ + +++ + + V GYTD G+D+ N+ LSQ RA SV
Sbjct 237 DVTFAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTDRIGSDAFNVKLSQERADSV 296
Query 170 ANYLSGQGVSSSRINAQGYGSSNPI--ASNATAQGRE-------QNRRVEISI 213
ANY +GV++ I+A GYG +NP+ A+ +GR+ +RRVEI++
Sbjct 297 ANYFVAKGVAADAISATGYGKANPVTGATCDQVKGRKALIACFAPDRRVEIAV 349
>P38368 Outer membrane protein P5 [Haemophilus influenzae]
Length=353
Score = 83.2 bits (204), Expect = 4e-22
Identities = 43/113 (38%), Positives = 70/113 (62%), Gaps = 9/113 (8%)
Query 110 NITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSV 169
++TF K+N+KP +TL+ + +++ + + V GYTD G+D+ N+ LSQ RA SV
Sbjct 237 DVTFAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTDRIGSDAFNVKLSQERADSV 296
Query 170 ANYLSGQGVSSSRINAQGYGSSNPI--ASNATAQGRE-------QNRRVEISI 213
ANY +GV++ I+A GYG +NP+ A+ +GR+ +RRVEI++
Sbjct 297 ANYFVAKGVAADAISATGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 349
>A3M8K2 Outer membrane protein Omp38 [Acinetobacter baumannii
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)]
Length=356
Score = 82.8 bits (203), Expect = 5e-22
Identities = 48/110 (44%), Positives = 65/110 (59%), Gaps = 1/110 (1%)
Query 105 LVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQA 164
L M + FDTNKSNIK + + KVA+ L+E + + G+TDNTG +N LS A
Sbjct 226 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLA 285
Query 165 RAQSVANYLSGQ-GVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
RA SV + L + V +SR++ QG+ PIA N T +GR NRRV +I
Sbjct 286 RANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATI 335
>Q6RYW5 Outer membrane protein Omp38 [Acinetobacter baumannii
(strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP
70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)]
Length=356
Score = 82.8 bits (203), Expect = 5e-22
Identities = 48/110 (44%), Positives = 65/110 (59%), Gaps = 1/110 (1%)
Query 105 LVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQA 164
L M + FDTNKSNIK + + KVA+ L+E + + G+TDNTG +N LS A
Sbjct 226 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLA 285
Query 165 RAQSVANYLSGQ-GVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
RA SV + L + V +SR++ QG+ PIA N T +GR NRRV +I
Sbjct 286 RANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATI 335
>P45996 Outer membrane protein P5 [Haemophilus influenzae]
Length=359
Score = 80.9 bits (198), Expect = 2e-21
Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 9/113 (8%)
Query 110 NITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSV 169
++TF K+N+KP +TL+ V +++ + V GYT+ G+D+ N+ LSQ RA SV
Sbjct 243 DVTFAFGKANLKPQAQATLDSVYGEISQVKSRKVAVAGYTNRIGSDAFNVKLSQERADSV 302
Query 170 ANYLSGQGVSSSRINAQGYGSSNPI--ASNATAQGRE-------QNRRVEISI 213
ANY +GV++ I+A GYG +NP+ A+ +GR+ +RRVEI++
Sbjct 303 ANYFVAKGVAADAISATGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355
Lambda K H a alpha
0.312 0.128 0.347 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 822324
Database: b45cf272bcc43666fc2a99f23daf58f5.SwissProt.fasta
Posted date: Jun 1, 2024 2:24 PM
Number of letters in database: 5,386
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
