BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0225686c65dfc3610a4c3bbed994701d.SwissProt.fasta
13 sequences; 1,756 total letters
Query= ACIAD0909
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
F0KFM4 Outer membrane protein assembly factor BamE [Acinetobacter... 235 2e-85
Q4FV24 Outer membrane protein assembly factor BamE [Psychrobacter... 120 5e-40
O68562 Outer membrane protein assembly factor BamE [Pseudomonas a... 76.6 2e-22
P0A939 Outer membrane protein assembly factor BamE [Shigella flex... 70.9 1e-20
Q32CX2 Outer membrane protein assembly factor BamE [Shigella dyse... 70.9 1e-20
P0A938 Outer membrane protein assembly factor BamE [Escherichia c... 70.9 1e-20
P0A937 Outer membrane protein assembly factor BamE [Escherichia c... 70.9 1e-20
Q7CPZ3 Outer membrane protein assembly factor BamE [Salmonella ty... 69.7 3e-20
O68564 Outer membrane protein assembly factor BamE [Pseudomonas f... 70.5 5e-20
Q7CH39 Outer membrane protein assembly factor BamE [Yersinia pestis] 67.8 2e-19
E1VAU8 Outer membrane protein assembly factor BamE [Halomonas elo... 67.4 5e-19
G0A7H1 Outer membrane protein assembly factor BamE [Methylomonas ... 66.6 1e-18
P44057 Outer membrane protein assembly factor BamE [Haemophilus i... 65.5 2e-18
>F0KFM4 Outer membrane protein assembly factor BamE [Acinetobacter
calcoaceticus (strain PHEA-2)]
Length=132
Score = 235 bits (600), Expect = 2e-85
Identities = 112/132 (85%), Positives = 123/132 (93%), Gaps = 0/132 (0%)
Query 1 MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTIT 60
MQKL+L L VTSLLAGCS GVYKVDIPQGTPLTKAQAS+VQVGM++QQVRFLLGSPT+T
Sbjct 1 MQKLVLTLLVTSLLAGCSIFGVYKVDIPQGTPLTKAQASQVQVGMNFQQVRFLLGSPTVT 60
Query 61 DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLP 120
DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYF+ +G V IEG++T+P+SQPGLP
Sbjct 61 DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFDGTGTVTKIEGLETIPESQPGLP 120
Query 121 GSKEAILTAPPL 132
SKEAILTAPPL
Sbjct 121 ASKEAILTAPPL 132
>Q4FV24 Outer membrane protein assembly factor BamE [Psychrobacter
arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=138
Score = 120 bits (302), Expect = 5e-40
Identities = 57/108 (53%), Positives = 77/108 (71%), Gaps = 2/108 (2%)
Query 8 LFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLNPLR 67
L V ++GCS L VYK+D+PQGTP+T+ QA K+QVGM+ QV ++LGSP I D L P R
Sbjct 30 LGVAVTMSGCSLLSVYKIDLPQGTPITQTQAQKLQVGMNQNQVLYILGSPAIRDTLEPNR 89
Query 68 WDYIYNYIPGTYAKKAKIPAAH--GQHLKIYFNESGIVKSIEGIDTLP 113
WDYIY+Y GT A++ I QHLK+YF+ +GIV I+G+++LP
Sbjct 90 WDYIYDYQAGTEARRKGIADVKNASQHLKVYFDNNGIVTGIQGLESLP 137
>O68562 Outer membrane protein assembly factor BamE [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 /
JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=176
Score = 76.6 bits (187), Expect = 2e-22
Identities = 44/122 (36%), Positives = 69/122 (57%), Gaps = 13/122 (11%)
Query 6 LALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLNP 65
LA + LAGCS GVYK+DI QG +T+ +++ GM+ +QVRF++G+P I D +
Sbjct 11 LAFAGLAALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLIVDTFHA 70
Query 66 LRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGSKEA 125
RWDY+Y+ PG ++ + + ++FN+S + + G D PG+ EA
Sbjct 71 NRWDYLYSIQPGGGRRQQ-------ERVSLFFNDSDQLAGLNG-----DFMPGV-SRDEA 117
Query 126 IL 127
IL
Sbjct 118 IL 119
>P0A939 Outer membrane protein assembly factor BamE [Shigella
flexneri]
Length=113
Score = 70.9 bits (172), Expect = 1e-20
Identities = 44/118 (37%), Positives = 62/118 (53%), Gaps = 16/118 (14%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A + L AGCSTL VY+ DI QG LT SK++VGM+ QQV + LG+P ++DP
Sbjct 10 AAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFG 69
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGS 122
W Y++ PG Q L + FN SG++ +I D++P L G+
Sbjct 70 TNTWFYVFRQQPGH-------EGVTQQTLTLTFNSSGVLTNI-------DNKPALSGN 113
>Q32CX2 Outer membrane protein assembly factor BamE [Shigella
dysenteriae serotype 1 (strain Sd197)]
Length=113
Score = 70.9 bits (172), Expect = 1e-20
Identities = 44/118 (37%), Positives = 62/118 (53%), Gaps = 16/118 (14%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A + L AGCSTL VY+ DI QG LT SK++VGM+ QQV + LG+P ++DP
Sbjct 10 AAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFG 69
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGS 122
W Y++ PG Q L + FN SG++ +I D++P L G+
Sbjct 70 TNTWFYVFRQQPGH-------EGVTQQTLTLTFNSSGVLTNI-------DNKPALSGN 113
>P0A938 Outer membrane protein assembly factor BamE [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=113
Score = 70.9 bits (172), Expect = 1e-20
Identities = 44/118 (37%), Positives = 62/118 (53%), Gaps = 16/118 (14%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A + L AGCSTL VY+ DI QG LT SK++VGM+ QQV + LG+P ++DP
Sbjct 10 AAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFG 69
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGS 122
W Y++ PG Q L + FN SG++ +I D++P L G+
Sbjct 70 TNTWFYVFRQQPGH-------EGVTQQTLTLTFNSSGVLTNI-------DNKPALSGN 113
>P0A937 Outer membrane protein assembly factor BamE [Escherichia
coli (strain K12)]
Length=113
Score = 70.9 bits (172), Expect = 1e-20
Identities = 44/118 (37%), Positives = 62/118 (53%), Gaps = 16/118 (14%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A + L AGCSTL VY+ DI QG LT SK++VGM+ QQV + LG+P ++DP
Sbjct 10 AAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFG 69
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGS 122
W Y++ PG Q L + FN SG++ +I D++P L G+
Sbjct 70 TNTWFYVFRQQPGH-------EGVTQQTLTLTFNSSGVLTNI-------DNKPALSGN 113
>Q7CPZ3 Outer membrane protein assembly factor BamE [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=112
Score = 69.7 bits (169), Expect = 3e-20
Identities = 41/103 (40%), Positives = 56/103 (54%), Gaps = 9/103 (9%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A + L AGCSTL VY+ DI QG LT +KV+VGM+ QQV + LG+P +TDP
Sbjct 10 AAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVAKVRVGMTQQQVAYALGTPMMTDPFG 69
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIE 107
W Y++ PG Q L + FN SG++ +I+
Sbjct 70 TNTWFYVFRQQPGH-------ENVTQQTLTLTFNSSGVLTNID 105
>O68564 Outer membrane protein assembly factor BamE [Pseudomonas
fluorescens]
Length=175
Score = 70.5 bits (171), Expect = 5e-20
Identities = 44/128 (34%), Positives = 70/128 (55%), Gaps = 16/128 (13%)
Query 3 KLMLALFV---TSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTI 59
KL+L F LAGCS GVYK+DI QG +T+ +++ GM+ +QVRF++G+ +
Sbjct 5 KLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNALL 64
Query 60 TDPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGL 119
TD + RWDY+Y+ PG ++ + + + FN + + S+ G D PG+
Sbjct 65 TDTFHADRWDYLYSLQPGGGERQQ-------ERVSVIFNGNDQLVSLSG-----DFMPGV 112
Query 120 PGSKEAIL 127
EA+L
Sbjct 113 -SRDEALL 119
>Q7CH39 Outer membrane protein assembly factor BamE [Yersinia
pestis]
Length=116
Score = 67.8 bits (164), Expect = 2e-19
Identities = 44/118 (37%), Positives = 62/118 (53%), Gaps = 16/118 (14%)
Query 7 ALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLN 64
A+ + L AGCSTL VY+ DI QG L+ ASK+ GM+ QQV + LG+P + DP
Sbjct 13 AVMLAMLTAGCSTLEKVVYRPDINQGNYLSPIDASKIHKGMTQQQVAYTLGTPMLQDPFG 72
Query 65 PLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGS 122
W Y++ PG KI Q L + F+ SG++ I+ ++P L GS
Sbjct 73 TQTWFYVFRQQPG----HEKITQ---QTLTLTFDSSGVLTDIK-------NEPALTGS 116
>E1VAU8 Outer membrane protein assembly factor BamE [Halomonas
elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB
2198 / 1H9)]
Length=152
Score = 67.4 bits (163), Expect = 5e-19
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query 1 MQKLMLALFVT---SLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSP 57
MQKL + +T +L++GCS GVYK D+ QG +T A A ++Q GM+ QQV L+GSP
Sbjct 14 MQKLTRTVTLTVALTLVSGCSYFGVYKRDLAQGNLVTSAMAEQLQPGMTRQQVVNLMGSP 73
Query 58 TITDPLNPLRWDYIY 72
+ P + +WDY+Y
Sbjct 74 MLEAPFDAQQWDYVY 88
>G0A7H1 Outer membrane protein assembly factor BamE [Methylomonas
methanica (strain MC09)]
Length=166
Score = 66.6 bits (161), Expect = 1e-18
Identities = 39/130 (30%), Positives = 66/130 (51%), Gaps = 14/130 (11%)
Query 6 LALFVTSLLAGCSTL-----GVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTIT 60
LA+ L C T+ GVY +DI QG + +A +++ MS +QV +++GSP +T
Sbjct 8 LAVAAALTLTACETILNNLPGVYSIDIEQGNMIDQAMVDQLRPNMSKRQVLYIMGSPMLT 67
Query 61 DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLP 120
D + RWDY+Y+ PG A+ K + ++F+ ++ ++G D P P +
Sbjct 68 DTFHERRWDYLYSDQPGGEARVQK-------RISLFFDGDNLI-GVQG-DFRPSKLPVIK 118
Query 121 GSKEAILTAP 130
S E + P
Sbjct 119 ESTETTVDVP 128
>P44057 Outer membrane protein assembly factor BamE [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=137
Score = 65.5 bits (158), Expect = 2e-18
Identities = 42/121 (35%), Positives = 65/121 (54%), Gaps = 10/121 (8%)
Query 1 MQKLMLALFVTSLLAGCSTLG--VYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPT 58
++ L+ A F+ LA CST+ VY++D+PQG L ++V+ GM+ QQV++LLG+P
Sbjct 3 VKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPV 62
Query 59 ITDPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPD-SQP 117
+ DP N W Y++ + + P H +K F++ GIV LP SQ
Sbjct 63 LVDPYNSQTWYYVF-----LQQRAYETPVQHTFTVK--FDQRGIVTETHLDKPLPQVSQQ 115
Query 118 G 118
G
Sbjct 116 G 116
Lambda K H a alpha
0.322 0.139 0.420 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 138006
Database: 0225686c65dfc3610a4c3bbed994701d.SwissProt.fasta
Posted date: May 20, 2024 6:59 AM
Number of letters in database: 1,756
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
