BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1d03b10a18069757557ea10e023c7c73.TrEMBL.fasta
18 sequences; 3,612 total letters
Query= ACIAD0935
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
Q6FDM8 Putative RNA polymerase sigma factor [Acinetobacter baylyi... 416 2e-154
A0A7G2SDI5 RNA polymerase subunit sigma [Acinetobacter sp] 416 2e-154
N9RQI8 TIGR02943 family RNA polymerase sigma-70 factor [Acinetoba... 389 9e-144
N9KB77 TIGR02943 family RNA polymerase sigma-70 factor [Acinetoba... 385 3e-142
S3T8F7 RNA polymerase factor sigma-70 [Acinetobacter colistinires... 383 4e-141
N9PVW4 TIGR02943 family RNA polymerase sigma-70 factor [Acinetoba... 382 7e-141
A0A829HKC1 RNA polymerase sigma-70 factor, ECF subfamily [Acineto... 382 7e-141
N9R6D3 TIGR02943 family RNA polymerase sigma-70 factor [Acinetoba... 380 3e-140
N8XHM3 TIGR02943 family RNA polymerase sigma-70 factor [Acinetoba... 377 5e-139
Q70LP4 RNA polymerase sigma factor [Pasteurella multocida] 157 3e-52
Q9RCE1 SigY protein [Xanthomonas campestris] 70.5 2e-18
Q8RTK1 RNA polymerase sigmaE subunit [Xanthomonas campestris pv. ... 51.2 1e-11
Q0P6M2 RNA polymerase sigma factor [Escherichia coli] 50.8 2e-11
A9Q6H9 ECF sigma factor [Pseudomonas fluorescens] 50.8 2e-11
Q9R6S3 SigX [Pseudomonas fluorescens] 50.1 3e-11
Q9ZIG9 Putative ECF sigma factor X [Pseudomonas aeruginosa] 49.7 4e-11
Q9AE28 RNA polymerase sigma factor [Rhizobium leguminosarum] 47.4 2e-10
B3F472 RNA polymerase sigma factor [uncultured bacterium] 45.8 6e-10
>Q6FDM8 Putative RNA polymerase sigma factor [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=206
Score = 416 bits (1070), Expect = 2e-154
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS
Sbjct 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN
Sbjct 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>A0A7G2SDI5 RNA polymerase subunit sigma [Acinetobacter sp]
Length=206
Score = 416 bits (1070), Expect = 2e-154
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS
Sbjct 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN
Sbjct 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>N9RQI8 TIGR02943 family RNA polymerase sigma-70 factor [Acinetobacter
sp. NIPH 2100]
Length=206
Score = 389 bits (1000), Expect = 9e-144
Identities = 191/206 (93%), Positives = 202/206 (98%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
M+SASAH+ +D LDQ++NP FLQDLRQQMIKFAVLQLASLP AEDVVQ+ALASAFQHLDS
Sbjct 1 MNSASAHNHEDFLDQLHNPAFLQDLRQQMIKFAVLQLASLPQAEDVVQEALASAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVS+FN
Sbjct 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREMIELSSNEICEKLELTVSNFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLL+EDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLKEDCSC 206
>N9KB77 TIGR02943 family RNA polymerase sigma-70 factor [Acinetobacter
sp. ANC 3929]
Length=206
Score = 385 bits (990), Expect = 3e-142
Identities = 188/206 (91%), Positives = 201/206 (98%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
M+SASAH+ +D LDQ++NP FLQDLRQQMIKFAVLQLASLP AEDVVQ+ALASAFQHLDS
Sbjct 1 MNSASAHNHEDFLDQLHNPAFLQDLRQQMIKFAVLQLASLPQAEDVVQEALASAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLV+MSELF DEESELSIDALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVTMSELFTDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWI+FDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVS+FN
Sbjct 121 PQAWLSPEEMMEQQDFWIVFDACLNHLPAKYAQVFMLREMIELSSNEICEKLELTVSNFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLL+EDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLKEDCSC 206
>S3T8F7 RNA polymerase factor sigma-70 [Acinetobacter colistiniresistens]
Length=206
Score = 383 bits (983), Expect = 4e-141
Identities = 190/206 (92%), Positives = 200/206 (97%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
MSSASA ++ DLL Q++NP FLQDLRQQMIKFAVLQL+SL AEDVVQ+ALASAFQHLDS
Sbjct 1 MSSASAPNQDDLLHQLHNPAFLQDLRQQMIKFAVLQLSSLQQAEDVVQEALASAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVS+FN
Sbjct 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREMIELSSNEICEKLELTVSNFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>N9PVW4 TIGR02943 family RNA polymerase sigma-70 factor [Acinetobacter
courvalinii]
Length=206
Score = 382 bits (981), Expect = 7e-141
Identities = 188/206 (91%), Positives = 197/206 (96%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
M+SASA DL Q++NP FLQDLRQQMIKFAVLQLASLP AEDVVQ+AL SAFQHLDS
Sbjct 1 MNSASAPDHDDLFHQLHNPAFLQDLRQQMIKFAVLQLASLPQAEDVVQEALTSAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSI+ALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIEALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWI+FDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVSHFN
Sbjct 121 PQAWLSPEEMMEQQDFWIVFDACLNHLPAKYAQVFMLREMIELSSTEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>A0A829HKC1 RNA polymerase sigma-70 factor, ECF subfamily [Acinetobacter
gyllenbergii CIP 110306 = MTCC 11365]
Length=206
Score = 382 bits (981), Expect = 7e-141
Identities = 189/206 (92%), Positives = 197/206 (96%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
M+SASA DLL Q++NP FLQDLRQQMIKFAVLQLASLP AEDVVQ+AL SAFQHLDS
Sbjct 1 MNSASAPDHDDLLHQLHNPAFLQDLRQQMIKFAVLQLASLPQAEDVVQEALTSAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELF DEESELSI+ALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFNDEESELSIEALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVSHFN
Sbjct 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREMIELSSTEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>N9R6D3 TIGR02943 family RNA polymerase sigma-70 factor [Acinetobacter
colistiniresistens]
Length=206
Score = 380 bits (977), Expect = 3e-140
Identities = 187/206 (91%), Positives = 197/206 (96%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
M+SASA + DL Q++NP FLQDLRQQMIKFAVLQLASLP AEDVVQ+AL SAFQHLDS
Sbjct 1 MNSASAPNHDDLFHQLHNPAFLQDLRQQMIKFAVLQLASLPQAEDVVQEALTSAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSI+ALFDASGHWHKYEA
Sbjct 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIEALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAW SPEEMMEQQDFWI+FDACLNHLPAKYAQVFMLRE+IEL+S+EICEKLELTVSHFN
Sbjct 121 PQAWQSPEEMMEQQDFWIVFDACLNHLPAKYAQVFMLREMIELSSAEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>N8XHM3 TIGR02943 family RNA polymerase sigma-70 factor [Acinetobacter
sp. CIP 56.2]
Length=206
Score = 377 bits (969), Expect = 5e-139
Identities = 185/206 (90%), Positives = 196/206 (95%), Gaps = 0/206 (0%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
MSSASA + DL +Q++NP FLQDLRQQM+KFA+LQL+S+ AEDVVQ+AL SAFQHLDS
Sbjct 1 MSSASAKNHDDLFNQLHNPAFLQDLRQQMLKFAILQLSSIQQAEDVVQEALTSAFQHLDS 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
F GRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
Sbjct 61 FIGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
PQAW SPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIEL+S+EICEKLELTVSHFN
Sbjct 121 PQAWQSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELSSNEICEKLELTVSHFN 180
Query 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
VLMYRSRTRLRECLENKWLLQEDCSC
Sbjct 181 VLMYRSRTRLRECLENKWLLQEDCSC 206
>Q70LP4 RNA polymerase sigma factor [Pasteurella multocida]
Length=183
Score = 157 bits (396), Expect = 3e-52
Identities = 81/176 (46%), Positives = 113/176 (64%), Gaps = 5/176 (3%)
Query 22 LQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIID 81
L+ +R QM+KFA LQL AEDVVQ+A SA ++++SF ++A KTW+FAILKNKIID
Sbjct 9 LETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFAILKNKIID 68
Query 82 LIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFD 141
+R R V SEL DE+ ++ FD G W K AP E + + FW++F+
Sbjct 69 YLRVNHRFVVESELITDEDE----NSFFD-GGRWRKGYAPSRLQENENTVYSEQFWVLFE 123
Query 142 ACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
CL LPA A+VFM+RE +EL S +IC ++T S+ +VL+YR+R +L+ CL K
Sbjct 124 VCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSNLHVLLYRARLQLQHCLTTK 179
>Q9RCE1 SigY protein [Xanthomonas campestris]
Length=246
Score = 70.5 bits (171), Expect = 2e-18
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 17/171 (10%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
A+D VQ+A +A++ L F GRA+ KTW++AI++N+ + + ++ R V +F +
Sbjct 65 ADDAVQEAWLAAYRALPRFEGRASLKTWLWAIVRNQALARLGRERRYVPWEAVFPGVDGG 124
Query 103 LSIDALFDAS-------GHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVF 155
S+ FDA+ G WH+ E P+A LS E + + LP + +
Sbjct 125 KSL--RFDAAERGPTTPGPWHQ-EGPEALLSSAESAQ------CLGRAIAALPGAQQRAY 175
Query 156 MLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRECLENKWLLQEDCSC 206
LR++ + I L + + VL++R+R+ LR L N + Q +C C
Sbjct 176 WLRDMEGMELDNIAVHLATSNGNVRVLLHRARSALRRVL-NAYQGQGECRC 225
>Q8RTK1 RNA polymerase sigmaE subunit [Xanthomonas campestris
pv. campestris]
Length=206
Score = 51.2 bits (121), Expect = 1e-11
Identities = 44/187 (24%), Positives = 81/187 (43%), Gaps = 16/187 (9%)
Query 20 VFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKI 79
V ++ + +++ +A +DV QD A++ ++SF G A F TW+ I N
Sbjct 28 VLVRKYQHRIVALIGRYIADWSECQDVAQDTFVRAYRAINSFRGDAQFYTWLHRIAVN-- 85
Query 80 IDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWII 139
K+ LV+ + ++ ++S FD + + P+ E+M Q+ +
Sbjct 86 ----TAKNHLVAHNRRPPTDDIDVSDAEQFDGATRLRDTDTPE-----RELMRQELEQTV 136
Query 140 FDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSR----TRLRECLE 195
A + LP + LREV L+ EI K++ + ++R+R LR LE
Sbjct 137 MRA-VQALPEELRSAITLREVEGLSYEEIARKMDCPIGTVRSRIFRAREAIDIELRPLLE 195
Query 196 NKWLLQE 202
+ +E
Sbjct 196 TESATRE 202
>Q0P6M2 RNA polymerase sigma factor [Escherichia coli]
Length=191
Score = 50.8 bits (120), Expect = 2e-11
Identities = 41/153 (27%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ+A A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>A9Q6H9 ECF sigma factor [Pseudomonas fluorescens]
Length=196
Score = 50.8 bits (120), Expect = 2e-11
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 22/150 (15%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
A+DV Q+ + L +F G++ FKTW+++I N+ I R++ R + +
Sbjct 61 ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMD-------A 113
Query 103 LSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIE 162
LS+D L +AS + +AP+ PEE D W++ H+ ++ +LR V E
Sbjct 114 LSLDPLEEAS----EEKAPK----PEE-KGGLDRWLV------HVNPIDREILVLRFVAE 158
Query 163 LNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
L EI + + + +S + R+ +LRE
Sbjct 159 LEFQEIADIMHMGLSATKMRYKRALDKLRE 188
>Q9R6S3 SigX [Pseudomonas fluorescens]
Length=196
Score = 50.1 bits (118), Expect = 3e-11
Identities = 42/150 (28%), Positives = 73/150 (49%), Gaps = 22/150 (15%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
A+DV Q+ + L +F G++ FKTW+++I N+ I R++ R + +
Sbjct 61 ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMD-------A 113
Query 103 LSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIE 162
LS+D L +AS + +AP PEE D W++ H+ ++ +LR V E
Sbjct 114 LSLDPLEEAS----EEKAP----VPEE-KAGLDRWLV------HVNPIDREILVLRFVAE 158
Query 163 LNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
L EI + + + +S + R+ +LRE
Sbjct 159 LEFQEIADIMHMGLSATKMRYKRALDKLRE 188
>Q9ZIG9 Putative ECF sigma factor X [Pseudomonas aeruginosa]
Length=196
Score = 49.7 bits (117), Expect = 4e-11
Identities = 40/150 (27%), Positives = 72/150 (48%), Gaps = 22/150 (15%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
A+DV Q+ + L +F G++ FKTW+++I N+ I R++ R + +
Sbjct 61 ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMD-------A 113
Query 103 LSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIE 162
LS+D L +AS + ++P+ E D W++ H+ ++ +LR V E
Sbjct 114 LSLDPLEEAS----EEKSPKV-----EERGGLDRWLV------HVNPIDREILVLRFVAE 158
Query 163 LNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
L EI + + + +S + R+ RLRE
Sbjct 159 LEFQEIADIMHMGLSATKMRYKRALDRLRE 188
>Q9AE28 RNA polymerase sigma factor [Rhizobium leguminosarum]
Length=185
Score = 47.4 bits (111), Expect = 2e-10
Identities = 43/164 (26%), Positives = 65/164 (40%), Gaps = 24/164 (15%)
Query 32 FAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVS 91
FA+ + A+D+VQDA+ A+ D F K W+F IL+N++ +R+ R V
Sbjct 23 FAISLIGRHDRADDLVQDAIMKAWAKQDHFEMGTNMKAWLFTILRNELYSQMRKSGREVQ 82
Query 92 MSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKY 151
S D LF S H S ++ QD F L+ LP
Sbjct 83 DS------------DGLFTESMAMHP--------SQYGALDLQD----FKKALDQLPPDQ 118
Query 152 AQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRECLE 195
+ +L + E E V + R+R RL+E L+
Sbjct 119 REAIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQELLQ 162
>B3F472 RNA polymerase sigma factor [uncultured bacterium]
Length=159
Score = 45.8 bits (107), Expect = 6e-10
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query 29 MIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSR 88
M FAV + A+D+VQ+ L A+ LDSF W+F IL+N R++ R
Sbjct 1 MRAFAVSICGNPDRADDLVQETLVKAWSSLDSFEEGTNLTAWLFTILRNIYYSEFRKRRR 60
Query 89 LVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLP 148
S D + E + + AP S E ME QD F A L LP
Sbjct 61 ETS------DPDGEYAAGLI-----------APD---SQESHMEFQD----FRAALQKLP 96
Query 149 AKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRECL 194
+ +L ++ E E + + R+R RL E +
Sbjct 97 LDQREALILVAASGMSYEEAAEICDCAPGTMKSRVNRARNRLAELM 142
Lambda K H a alpha
0.326 0.135 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 482964
Database: 1d03b10a18069757557ea10e023c7c73.TrEMBL.fasta
Posted date: May 11, 2024 7:21 PM
Number of letters in database: 3,612
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
