BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 7f2ef0f4966238638d38e84387acc329.SwissProt.fasta
20 sequences; 5,985 total letters
Query= ACIAD0967
Length=298
Score E
Sequences producing significant alignments: (Bits) Value
Q3K7N4 HTH-type transcriptional regulator ArgP [Pseudomonas fluor... 202 7e-67
Q6LMN6 HTH-type transcriptional regulator ArgP [Photobacterium pr... 201 1e-66
Q4K779 HTH-type transcriptional regulator ArgP [Pseudomonas fluor... 196 1e-64
P70773 HTH-type transcriptional regulator ArgP [Aeromonas salmoni... 192 6e-63
Q7MHL5 HTH-type transcriptional regulator ArgP [Vibrio vulnificus... 191 1e-62
Q8DC96 HTH-type transcriptional regulator ArgP [Vibrio vulnificus... 188 2e-61
Q87LL6 HTH-type transcriptional regulator ArgP [Vibrio parahaemol... 185 3e-60
A4WE66 HTH-type transcriptional regulator ArgP [Enterobacter sp. ... 184 8e-60
Q9HW38 HTH-type transcriptional regulator ArgP [Pseudomonas aerug... 183 1e-59
Q02H78 HTH-type transcriptional regulator ArgP [Pseudomonas aerug... 183 1e-59
A6TDS6 HTH-type transcriptional regulator ArgP [Klebsiella pneumo... 182 4e-59
O52399 HTH-type transcriptional regulator ArgP [Edwardsiella icta... 177 4e-57
P0A8S1 HTH-type transcriptional regulator ArgP [Escherichia coli ... 174 3e-56
P9WMF5 HTH-type transcriptional regulator LysG [Mycobacterium tub... 150 1e-46
P94632 Lysine export transcriptional regulatory protein LysG [Cor... 149 2e-46
P0ACR0 HTH-type transcriptional activator AllS [Escherichia coli ... 50.1 3e-10
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 48.5 8e-10
P52691 Probable HTH-type transcriptional regulator LrrA [Synechoc... 48.1 1e-09
A5F9F9 Iron-regulated virulence regulatory protein IrgB [Vibrio c... 47.4 2e-09
P52693 Probable nitrogen assimilation transcriptional activator [... 47.4 2e-09
>Q3K7N4 HTH-type transcriptional regulator ArgP [Pseudomonas fluorescens
(strain Pf0-1)]
Length=297
Score = 202 bits (513), Expect = 7e-67
Identities = 111/299 (37%), Positives = 174/299 (58%), Gaps = 5/299 (2%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHA 60
M D K A AV EQ FE+AA L ++ SA++ R++ LE +GQ +L+R P + T
Sbjct 1 MFDYKLLSALAAVVEQAGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRGTPPSPTEI 60
Query 61 GQQLFEHLQHTRRLEQNFLHNLTDATPSQFF--KVMMAANADSLATWLLPALNEVASQQK 118
G++L H+Q R LE++ L L A + ++ +A NADSLATW A+ + ++Q
Sbjct 61 GRRLLNHVQQVRLLERD-LQTLVPALDEEGLPERLRIALNADSLATWWAEAVGDFCAEQH 119
Query 119 LMLEILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFR 178
L+L+++++DQ+ M G V+ C+ + + G +SV LG+MRY+ LA+ AF F
Sbjct 120 LLLDLIVEDQTVGLKRMRAGEVAGCLCASERPVAGARSVLLGAMRYRALASPAFIKRHFP 179
Query 179 HGVHREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYG 238
GV E L PA++F D + L + G + +H PSS F + GLG+G
Sbjct 180 DGVRAEQLPRTPALVFGPDDFLQHRYLASLG--VDGGFEHHLCPSSEGFIRLTEAGLGWG 237
Query 239 LVPELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYLSPL 297
LVPELQ+++ + LR+++P+ +D+PLYWHHW+ + L LTE L + +A++L PL
Sbjct 238 LVPELQVREQLERGVLRELLPDKPIDVPLYWHHWRNGGQLLGLLTEQLVRSSAQWLVPL 296
>Q6LMN6 HTH-type transcriptional regulator ArgP [Photobacterium
profundum (strain SS9)]
Length=298
Score = 201 bits (512), Expect = 1e-66
Identities = 114/293 (39%), Positives = 168/293 (57%), Gaps = 0/293 (0%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
+D + A AV Q FE+AA +LCIT SAV+ R++ LEK + Q LL+R +P T AG
Sbjct 4 VDYRWVAALDAVIAQRGFERAAEKLCITQSAVSQRIKQLEKLMAQPLLVREQPPRPTAAG 63
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
Q+L + R LEQ L +T SQ V +A NADSLATWLLPAL+ + + + L
Sbjct 64 QKLLGLYRRVRLLEQEVLPEITPDDISQPLSVALATNADSLATWLLPALSPLLKSRFIEL 123
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
+L++D++ T + G V IS+E + GC + YLG M Y +A+ FQ +F +GV
Sbjct 124 NLLVEDEARTLDKLRSGEVVGAISMEAGVIPGCVADYLGRMNYLCVASPDFQQKYFSNGV 183
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
+ L AP ++F+H D MH +++ + L G+ H + SS F G+ Y L+P
Sbjct 184 TQANLVSAPGVVFDHHDDMHEVFVQQYFNLPIGSVMKHTVRSSEAFVRIATEGIAYCLIP 243
Query 242 ELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
E+Q+++ D L ++ PE+ L LYWHHW +S L L+E L Q+A + L
Sbjct 244 EVQIQRELDRGDLVNVTPELSLVRNLYWHHWALESGVLTELSERLIQYARQAL 296
>Q4K779 HTH-type transcriptional regulator ArgP [Pseudomonas fluorescens
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=299
Score = 196 bits (499), Expect = 1e-64
Identities = 108/298 (36%), Positives = 173/298 (58%), Gaps = 5/298 (2%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHA 60
M D K A AV EQ FE+AA L ++ SA++ R++ LE +GQ +L+R P T
Sbjct 1 MFDYKLLSALAAVIEQAGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRVTPPAPTEI 60
Query 61 GQQLFEHLQHTRRLEQNFLHNLTDATPSQFF--KVMMAANADSLATWLLPALNEVASQQK 118
G++L H+Q R LE++ L +L A + ++ +A NADSLATW A+ + ++
Sbjct 61 GRRLLNHVQQVRLLERD-LQSLVPALDEEGLPERLRIALNADSLATWWAGAVGDFCAEHH 119
Query 119 LMLEILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFR 178
L+L+++++DQ+ M G V+AC+ + + G +S+ LG+MRY+ +A+ F F
Sbjct 120 LLLDLVVEDQTVGLKRMRAGEVAACVCASERPVAGARSLLLGAMRYRAMASPEFIVRHFP 179
Query 179 HGVHREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYG 238
GV E L PA++F D + L + GA+ +H PSS F + GLG+G
Sbjct 180 QGVRAEQLPRTPALVFGPDDFLQHRYLASLG--VDGAFEHHLCPSSEGFIRLTEAGLGWG 237
Query 239 LVPELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYLSP 296
LVPELQ+++ + L +++P+ +D+PLYWHHW+ + L LTEHL + +A++L P
Sbjct 238 LVPELQVREQLERGLLLELLPDKPIDVPLYWHHWRNGGQLLGLLTEHLARLSAQWLVP 295
>P70773 HTH-type transcriptional regulator ArgP [Aeromonas salmonicida]
Length=299
Score = 192 bits (487), Expect = 6e-63
Identities = 105/295 (36%), Positives = 157/295 (53%), Gaps = 0/295 (0%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
LD K A AV ++ +FE+AA +L IT SA++ R++ LE++ + LLIR++P T G
Sbjct 4 LDYKLLLALDAVMQEQNFERAAQRLHITQSAISQRIKQLEQQFAEPLLIRSQPLQATPLG 63
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
Q+L H + R+LE + P +V +A NADSLATW LPAL + Q + L
Sbjct 64 QKLLAHYRQVRQLELELAGEIAPDEPQAPIRVSIAVNADSLATWFLPALAPLLEQHPIEL 123
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
+L+DD+ T + +G +S+ + + GC LG MRY + A+ AF F G+
Sbjct 124 NLLVDDECRTLDRVREGQAFGAVSLHGQPLAGCCVDELGEMRYLLTASPAFVARHFPAGL 183
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
AL PA+ F+ +D MH + + +GL G YP H + SS F + GL Y L+P
Sbjct 184 TPAALAKTPAVAFDQRDDMHVSFMARHFGLEPGGYPCHTVRSSEAFVAMAEQGLAYCLIP 243
Query 242 ELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYLSP 296
ELQ++Q L D+ P L PLYWH W + + +++ L + L P
Sbjct 244 ELQIRQQLAQGILLDLSPSHHLIEPLYWHRWVLERGLHKQISQRLISEGRRALQP 298
>Q7MHL5 HTH-type transcriptional regulator ArgP [Vibrio vulnificus
(strain YJ016)]
Length=298
Score = 191 bits (485), Expect = 1e-62
Identities = 105/293 (36%), Positives = 168/293 (57%), Gaps = 0/293 (0%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
LD K +A AV QG FE+AA +L I+ SAV+ R++ LE+ L Q +LIR +P T G
Sbjct 4 LDYKWIEALDAVVAQGGFERAAEELYISQSAVSQRIKQLERFLAQSVLIREQPPKPTPVG 63
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
++L + R LE + L + ++ ++ +A NADSLATWLLPAL EV +Q+++ L
Sbjct 64 KKLLGLYRRVRILEHELIPELMNDDTAKPIQLALATNADSLATWLLPALKEVMTQRQVEL 123
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
+ + +S + ++ G V+ IS+E + + GCK+ YLG M Y +A+ F +F GV
Sbjct 124 NLAIYGESRSIEKLKSGEVAGAISLESQPIAGCKADYLGRMDYVCVASPDFYQRYFAAGV 183
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
+ + LR APA+ ++ D +H L + + + + H + SS F G+ Y L+P
Sbjct 184 NYQTLRKAPAVSYDQYDDLHNRFLHDHFNISRDSIINHNVGSSEAFVRLAVSGIAYCLIP 243
Query 242 ELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
+LQ++Q L DI P L +YWHHWQ +S L+ +++ + Q+A +L
Sbjct 244 KLQIEQELASGVLMDITPGFLLSYRIYWHHWQLESGVLKEISQAIVQYAQAHL 296
>Q8DC96 HTH-type transcriptional regulator ArgP [Vibrio vulnificus
(strain CMCP6)]
Length=298
Score = 188 bits (477), Expect = 2e-61
Identities = 104/293 (35%), Positives = 167/293 (57%), Gaps = 0/293 (0%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
LD K +A AV QG FE+AA +L I+ SAV+ R++ LE+ L Q +LIR +P T G
Sbjct 4 LDYKWIEALDAVVAQGGFERAAEELYISQSAVSQRIKQLERFLAQPVLIREQPPKPTPVG 63
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
++L + R LE + L + ++ ++ +A NADSLATWLLPAL EV + +++ L
Sbjct 64 KKLLGLYRRVRILEHELIPELMNDDTAKPIQLALATNADSLATWLLPALKEVMTLRQVEL 123
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
+ + +S + ++ G V+ IS+E + + GCK+ YLG M Y +A+ F +F GV
Sbjct 124 NLAIYGESRSIEKLKSGEVAGAISLESQPIAGCKADYLGRMDYVCVASPDFYQRYFAAGV 183
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
+ + LR APA+ ++ D +H L + + + + H + SS F G+ Y L+P
Sbjct 184 NYQTLRKAPAVSYDQYDDLHNRFLHDHFNISRDSIINHNVGSSEAFVRLAVSGIAYCLIP 243
Query 242 ELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
+LQ++Q L DI P L +YWHHWQ +S L+ +++ + Q+A +L
Sbjct 244 KLQIEQELASGVLMDITPGFLLSYRIYWHHWQLESGVLKEISQAIVQYAQAHL 296
>Q87LL6 HTH-type transcriptional regulator ArgP [Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633)]
Length=298
Score = 185 bits (469), Expect = 3e-60
Identities = 99/293 (34%), Positives = 165/293 (56%), Gaps = 0/293 (0%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
LD K +A AV QGSFE+AA L ++ SA++ R++ LEK L Q +LIR +P T G
Sbjct 4 LDYKWIEALDAVVYQGSFERAAEHLFVSQSAISQRIKQLEKFLAQPVLIREQPPKPTPIG 63
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
++L + R LE L + + T ++ ++ +A NADSLATWLLPAL +V +++ L
Sbjct 64 KKLLGLYRRVRLLEHEILPEIKNDTTTRPVQLSLATNADSLATWLLPALQDVMKTRQVEL 123
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
++ + +S + ++ G V+ IS+E +A+ C++ YLG + Y +A F +F GV
Sbjct 124 KLTIYGESRSIEKLKSGEVAGAISLESQAIPNCRADYLGRIDYVCVANPEFYQRYFSEGV 183
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
+ + L APA+ ++ D +H L + + + + +H I SS F G+ Y L+P
Sbjct 184 NNQTLAKAPAVSYDQYDDLHKKFLTEHFNVRPDSVIHHNISSSEAFLKMALAGVAYCLIP 243
Query 242 ELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
LQ+ + L DI P + +YWHHWQ ++ LQ +++ + +A ++L
Sbjct 244 RLQITDELEQGSLIDITPGFLMSYRIYWHHWQLETGVLQEISQAIVNYAQRHL 296
>A4WE66 HTH-type transcriptional regulator ArgP [Enterobacter
sp. (strain 638)]
Length=297
Score = 184 bits (466), Expect = 8e-60
Identities = 103/292 (35%), Positives = 164/292 (56%), Gaps = 2/292 (1%)
Query 3 DNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQ 62
D + A AV + FE+AA +LCIT SAV+ R++ LE GQ LL+R P T GQ
Sbjct 5 DYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQ 64
Query 63 QLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLMLE 122
+L L+ LE+ +L + + T S + +A NADSLATWLLPAL+ V + + L
Sbjct 65 KLLALLRQVELLEEEWLGD--EQTGSTPLLLSLAVNADSLATWLLPALSAVLADSPIRLN 122
Query 123 ILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGVH 182
+ ++D++ T + +G V +SI+P+A+ C LG++ Y + ++AF +F +GV
Sbjct 123 LQVEDETRTQERLRRGEVVGAVSIQPQALPSCLVDQLGALDYLFVGSKAFADRYFPNGVT 182
Query 183 REALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVPE 242
R AL APA+ F+H D MH L++ + L G+ P H + SS F + G ++P
Sbjct 183 RAALLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPH 242
Query 243 LQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
LQ+++ +L D+ P + LYWH + +SR ++++T+ L + K L
Sbjct 243 LQIEKELKSGELIDLTPGLYQRRMLYWHRFAPESRMMRNVTDALLAYGHKVL 294
>Q9HW38 HTH-type transcriptional regulator ArgP [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=300
Score = 183 bits (465), Expect = 1e-59
Identities = 107/293 (37%), Positives = 166/293 (57%), Gaps = 7/293 (2%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHA 60
+ D K A AV EQG FE+AA L ++ SAV+ R++ LE +GQ +L+R P T
Sbjct 3 LFDYKLLAALAAVVEQGGFERAAQALGLSQSAVSQRIKLLEARVGQPVLVRETPPHPTDL 62
Query 61 GQQLFEHLQHTRRLE---QNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQ 117
G++L H+Q R LE Q ++ NL + + ++ +A NADSLATW A+ + +++
Sbjct 63 GRRLLNHVQQVRLLEGDLQRWVPNLDEGGAPE--RLRIALNADSLATWWAAAVGDFCAER 120
Query 118 KLMLEILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWF 177
+++L+++++DQ M G V+ C+ + + G +S+ LG+MRY+ LA+ F F
Sbjct 121 RVLLDLVVEDQEVGLKRMRAGEVAGCVCGSARPVAGARSLLLGAMRYRGLASPDFIARHF 180
Query 178 RHGVHREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGY 237
GV AL PAI+F D + L K G ++G + +H PSS F GLG+
Sbjct 181 PRGVEAAALAGVPAIVFGPDDLLQHRFL-KDLG-VEGGFIHHLCPSSEGFVRLTAGGLGW 238
Query 238 GLVPELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHA 290
GLVPE Q++ +L +++P +D+PLYWH+W+ L SLTEHL A
Sbjct 239 GLVPERQVQGELARGELVELLPGQVIDVPLYWHYWRNGGELLASLTEHLLARA 291
>Q02H78 HTH-type transcriptional regulator ArgP [Pseudomonas aeruginosa
(strain UCBPP-PA14)]
Length=300
Score = 183 bits (465), Expect = 1e-59
Identities = 107/293 (37%), Positives = 166/293 (57%), Gaps = 7/293 (2%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHA 60
+ D K A AV EQG FE+AA L ++ SAV+ R++ LE +GQ +L+R P T
Sbjct 3 LFDYKLLAALAAVVEQGGFERAAQALGLSQSAVSQRIKLLEARVGQPVLVRETPPHPTDL 62
Query 61 GQQLFEHLQHTRRLE---QNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQ 117
G++L H+Q R LE Q ++ NL + + ++ +A NADSLATW A+ + +++
Sbjct 63 GRRLLNHVQQVRLLEGDLQRWVPNLDEGGAPE--RLRIALNADSLATWWAAAVGDFCAER 120
Query 118 KLMLEILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWF 177
+++L+++++DQ M G V+ C+ + + G +S+ LG+MRY+ LA+ F F
Sbjct 121 RVLLDLVVEDQEVGLKRMRAGEVAGCVCGSARPVAGARSLLLGAMRYRGLASPDFIARHF 180
Query 178 RHGVHREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGY 237
GV AL PAI+F D + L K G ++G + +H PSS F GLG+
Sbjct 181 PRGVEAAALAGVPAIVFGPDDLLQHRFL-KDLG-VEGGFIHHLCPSSEGFVRLTAGGLGW 238
Query 238 GLVPELQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHA 290
GLVPE Q++ +L +++P +D+PLYWH+W+ L SLTEHL A
Sbjct 239 GLVPERQVQGELARGELVELLPGQVIDVPLYWHYWRNGGELLASLTEHLLARA 291
>A6TDS6 HTH-type transcriptional regulator ArgP [Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=297
Score = 182 bits (461), Expect = 4e-59
Identities = 103/292 (35%), Positives = 162/292 (55%), Gaps = 2/292 (1%)
Query 3 DNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQ 62
D + A AV + FE+AA +LCIT SAV+ R++ LE GQ LL+R P T GQ
Sbjct 5 DYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQ 64
Query 63 QLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLMLE 122
+L L+ LE+ +L + + T S + +A NADSLATWLLPAL V S + L
Sbjct 65 KLLALLRQVELLEEEWLGD--EQTGSTPLLLSLAVNADSLATWLLPALANVLSDSPIRLN 122
Query 123 ILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGVH 182
+ ++D++ T + +G V +SI+P+A+ C LG++ Y +A++ F +F +GV
Sbjct 123 LQVEDETRTQERLRRGEVVGAVSIQPQALPSCLVDQLGALDYLFVASKEFAQRYFPNGVT 182
Query 183 REALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVPE 242
R AL AP + F+H D MH L++ + L G+ P H + SS F + G ++P
Sbjct 183 RSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPH 242
Query 243 LQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
LQ+++ + +L D+ P + LYWH + +SR ++ +T+ L + K L
Sbjct 243 LQIEKELNSGELIDLTPGLFQRRMLYWHRFAPESRMMRRVTDALIDYGHKVL 294
>O52399 HTH-type transcriptional regulator ArgP [Edwardsiella
ictaluri (strain 93-146)]
Length=297
Score = 177 bits (448), Expect = 4e-57
Identities = 104/292 (36%), Positives = 155/292 (53%), Gaps = 2/292 (1%)
Query 3 DNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQ 62
D + A AV + FE+AA +LCIT SAV+ R++ LE GQ LL+R P T GQ
Sbjct 5 DYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPRPTEQGQ 64
Query 63 QLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLMLE 122
+L L LE+ +L N D + + +A NADSLATWLLPAL V + L L
Sbjct 65 RLLALLHQVELLEEEWLGN--DNSSDGPLLLSLAVNADSLATWLLPALKPVLADSPLRLN 122
Query 123 ILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGVH 182
+ ++D+S T + +G V +S++P+ + C LG++ Y A+ AF +F +GV
Sbjct 123 LQVEDESRTQERLRRGEVVGAVSLQPQPLPSCLVDRLGALDYLFCASPAFAARYFPNGVT 182
Query 183 REALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVPE 242
R +L APA+ F+H D MH L++ + L G+ P H + SS F G ++P
Sbjct 183 RSSLLKAPAVAFDHLDDMHQAFLQQNFELPPGSVPCHIVNSSEAFVQLALQGTTCCMLPH 242
Query 243 LQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
LQ+++ L D+ P M LYWH + +SR ++ +T+ L H L
Sbjct 243 LQVERELRKGVLIDLTPGMVQRRMLYWHRFAPESRLMRRVTDALISHGRDVL 294
>P0A8S1 HTH-type transcriptional regulator ArgP [Escherichia coli
(strain K12)]
Length=297
Score = 174 bits (442), Expect = 3e-56
Identities = 100/292 (34%), Positives = 160/292 (55%), Gaps = 2/292 (1%)
Query 3 DNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQ 62
D + A AV + FE+AA +LCIT SAV+ R++ LE GQ LL+R P T GQ
Sbjct 5 DYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQ 64
Query 63 QLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLMLE 122
+L L+ LE+ +L + + T S + +A NADSLATWLLPAL V + + L
Sbjct 65 KLLALLRQVELLEEEWLGD--EQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIRLN 122
Query 123 ILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGVH 182
+ ++D++ T + +G V +SI+ +A+ C LG++ Y ++++ F +F +GV
Sbjct 123 LQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNGVT 182
Query 183 REALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVPE 242
R AL AP + F+H D MH L++ + L G+ P H + SS F + G ++P
Sbjct 183 RSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPH 242
Query 243 LQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYL 294
LQ+++ +L D+ P + LYWH + +SR ++ +T+ L + K L
Sbjct 243 LQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVL 294
>P9WMF5 HTH-type transcriptional regulator LysG [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=303
Score = 150 bits (378), Expect = 1e-46
Identities = 90/284 (32%), Positives = 151/284 (53%), Gaps = 7/284 (2%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
LD Q A AV E GSF+ AA +L +T SAV+ R+++LE+++GQ+L++R +PC T AG
Sbjct 6 LDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVREKPCRATTAG 65
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLML 121
L T LE L + + ++ +A NADS+ATW + + ++L
Sbjct 66 IPLLRLAAQTALLESEALAEMGGNASLKRTRITIAVNADSMATWFSAVFDGLGD---VLL 122
Query 122 EILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGV 181
++ ++DQ H+ L+ +G ++ E + GC+ LG MRY +A++ F G
Sbjct 123 DVRIEDQDHSARLLREGVAMGAVTTERNPVPGCRVHPLGEMRYLPVASRPFVQRHLSDGF 182
Query 182 HREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVP 241
A AP++ +N D + D+L ++ P H++P++ F A + GLG+G+ P
Sbjct 183 TAAAAAKAPSLAWNRDDGLQ-DMLVRKAFRRAITRPTHFVPTTEGFTAAARAGLGWGMFP 241
Query 242 E-LQLKQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTE 284
E L AD +R + ++ LD+PLYW W+ S + +T+
Sbjct 242 EKLAASPLADGSFVR--VCDIHLDVPLYWQCWKLDSPIIARITD 283
>P94632 Lysine export transcriptional regulatory protein LysG
[Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 /
BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)]
Length=290
Score = 149 bits (376), Expect = 2e-46
Identities = 92/291 (32%), Positives = 154/291 (53%), Gaps = 5/291 (2%)
Query 6 QCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQQLF 65
Q D ++ ++GSFE A++ L I+ SAV+ RV+ALE +G++L+ R +P T AG+ L
Sbjct 5 QLDTLLSIIDEGSFEGASLALSISPSAVSQRVKALEHHVGRVLVSRTQPAKATEAGEVLV 64
Query 66 EHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKLMLEILL 125
+ + L+ L+ + +A NADSL+TW P NEVAS L + L
Sbjct 65 QAARKMVLLQAETKAQLSGRLAE--IPLTIAINADSLSTWFPPVFNEVASWGGATLTLRL 122
Query 126 DDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRHGVHREA 185
+D++HT +L+ +G V ++ E + GC+ V LG+MR+ +AT + + + G +
Sbjct 123 EDEAHTLSLLRRGDVLGAVTREANPVAGCEVVELGTMRHLAIATPSLRDAYMVDG--KLD 180
Query 186 LRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSSACFFTAVQLGLGYGLVPELQL 245
P + F KD + L+ + G +PS+ F A++ GLG+GL+PE Q
Sbjct 181 WAAMPVLRFGPKDVLQDRDLDGRVDGPVGRRRVSIVPSAEGFGEAIRRGLGWGLLPETQA 240
Query 246 KQAADPDQLRDIMPEMQLDIPLYWHHWQQQSRPLQSLTEHLTQHAAKYLSP 296
++ ++ E+ +D P+YW W+ +SR L LT+ + A + L P
Sbjct 241 APMLKAGEV-ILLDEIPIDTPMYWQRWRLESRSLARLTDAVVDAAIEGLRP 290
>P0ACR0 HTH-type transcriptional activator AllS [Escherichia coli
(strain K12)]
Length=308
Score = 50.1 bits (118), Expect = 3e-10
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (2%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIR-ARPCTLTH 59
M D + F AVAE GSF +AA +LC T + ++ R++ LE+ G L R R TLT
Sbjct 1 MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTA 60
Query 60 AGQQL 64
AG+ L
Sbjct 61 AGEHL 65
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 48.5 bits (114), Expect = 8e-10
Identities = 34/150 (23%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query 2 LDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAG 61
++ + F + + GSF +AA L + +++R++ LE++LG LL R + LT AG
Sbjct 1 MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAG 60
Query 62 QQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPAL--NEVASQQKL 119
+ +E + HNL+D + ++ ++ A+ + P + + + K+
Sbjct 61 KLFYERTGDLLMQYEALKHNLSDLKEEE-AGIINIGVSEPTASLIFPEILKDFLMDYPKI 119
Query 120 MLEILLDDQSHTHALMEKGTVSACISIEPK 149
+ I +DD + + GT+ + EP+
Sbjct 120 TVNIKVDDANTCSQKLLDGTIDFAVCGEPE 149
>P52691 Probable HTH-type transcriptional regulator LrrA [Synechococcus
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=294
Score = 48.1 bits (113), Expect = 1e-09
Identities = 36/106 (34%), Positives = 54/106 (51%), Gaps = 6/106 (6%)
Query 6 QCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRAR-PCTLTHAGQQL 64
Q AV E G+F AA+QL ++ SAV+ + ALE ELG +LL R R T G+++
Sbjct 5 QLQILAAVVETGNFSAAALQLDLSQSAVSRAIAALEDELGVVLLSRGRFGARPTRVGERV 64
Query 65 FEHLQHTRRLEQNFLH--NLTDATPSQFFKVMMAANADSLATWLLP 108
+ Q +L + +H NL ++ A+ S AT +LP
Sbjct 65 LQLAQRMLQLHDSIVHEVNLEKGLQGGHLRI---ASFRSAATHVLP 107
>A5F9F9 Iron-regulated virulence regulatory protein IrgB [Vibrio
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa
395 / O395)]
Length=298
Score = 47.4 bits (111), Expect = 2e-09
Identities = 60/244 (25%), Positives = 95/244 (39%), Gaps = 7/244 (3%)
Query 1 MLDNKQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIR-ARPCTLTH 59
M D AF A+ + S AA L S ++ R+ LE++LGQ LL+R TLT
Sbjct 1 MQDLSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTK 60
Query 60 AGQQLFEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQKL 119
AG+ + + L L + ++ + + + + WL L+E Q
Sbjct 61 AGEVFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHST 120
Query 120 MLEILLDDQSHTHALMEKGTVSACISIEPKAMKGCKSVYLGSMRYKMLATQAFQGTWFRH 179
+ LL H+ + E + I IE A G + LG RY A+ + +
Sbjct 121 LKIRLLSQFQHSDEVFEPDLI---IWIEHAAPMGYRKERLGYWRYATYASPKYLAHRDKP 177
Query 180 GVHREALRVAPAIIFNHKDQMHFDLLEKQYGLIKGAYPYHYIPSS--ACFFTAVQLGLGY 237
RE + P I F + +L ++G + S A A+ G G
Sbjct 178 THPRELIH-HPWIDFIACRRAELELHHPEFGSYSLPALESRLQSDNLAMQADAIAKGRGI 236
Query 238 GLVP 241
GL+P
Sbjct 237 GLLP 240
>P52693 Probable nitrogen assimilation transcriptional activator
[Synechococcus elongatus (strain ATCC 33912 / PCC 7942 /
FACHB-805)]
Length=309
Score = 47.4 bits (111), Expect = 2e-09
Identities = 36/113 (32%), Positives = 56/113 (50%), Gaps = 1/113 (1%)
Query 5 KQCDAFFAVAEQGSFEQAAIQLCITASAVTLRVQALEKELGQLLLIRARPCTLTHAGQQL 64
+Q A VAE GSF++AA ++ S ++ +V+ LE ELG L R LT AG++L
Sbjct 4 EQLQAALRVAETGSFQEAAQKVGCNQSTISRQVKGLEDELGIALFRRQGRMKLTAAGERL 63
Query 65 FEHLQHTRRLEQNFLHNLTDATPSQFFKVMMAANADSLATWLLPALNEVASQQ 117
L+ + Q + + + ++ MA ADS+ LPA+ QQ
Sbjct 64 LPRLRRICQEWQTACTEIEELLTGRQTELCMAI-ADSIGGCYLPAVLNRFQQQ 115
Lambda K H a alpha
0.325 0.135 0.413 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1266295
Database: 7f2ef0f4966238638d38e84387acc329.SwissProt.fasta
Posted date: Jun 2, 2024 5:34 AM
Number of letters in database: 5,985
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
