BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: dfa2a7d78ca15a9b609eda2826f8a5e6.SwissProt.fasta
15 sequences; 3,603 total letters
Query= ACIAD0968
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
O05494 Uncharacterized HTH-type transcriptional regulator YdhC [B... 77.0 1e-20
P54988 Nta operon transcriptional regulator [Aminobacter aminovor... 70.9 2e-18
P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC ... 53.9 3e-12
P70790 Uncharacterized HTH-type transcriptional regulator in the ... 49.7 4e-11
P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH [S... 47.4 5e-10
Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH [E... 47.4 5e-10
P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH [E... 47.4 5e-10
P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli ... 47.4 5e-10
P32425 Uncharacterized HTH-type transcriptional regulator in unst... 45.1 3e-09
P9WMG7 Uncharacterized HTH-type transcriptional regulator Rv0494 ... 39.7 2e-07
P9WMG6 Uncharacterized HTH-type transcriptional regulator MT0514 ... 39.7 2e-07
P67740 Uncharacterized HTH-type transcriptional regulator Mb0505 ... 39.7 2e-07
Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi] 37.0 2e-06
Q9S470 Arabinose metabolism transcriptional repressor [Geobacillu... 35.4 6e-06
O31459 HTH-type transcriptional repressor GamR [Bacillus subtilis... 34.7 9e-06
>O05494 Uncharacterized HTH-type transcriptional regulator YdhC
[Bacillus subtilis (strain 168)]
Length=224
Score = 77.0 bits (188), Expect = 1e-20
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 11/204 (5%)
Query 23 YGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEIRP 82
Y LK+ IFN KPG+R ET L++ + SR+PIR+A+ LE++G + R+G+ I
Sbjct 17 YNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRNGFSITS 76
Query 83 LEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIELKKMWLIAPVDYLTDTKTLVLQ 142
L K E++ +R+ LE+ AV+ + + E+L ++E + + T+ ++
Sbjct 77 LTAKDVDEIYKIRIPLEQLAVELVIDEADEEEL-TILEKQLEETEKAIHNGTEDTEIIRL 135
Query 143 SEDFHCALVRAAGNQQIAKIHQEASEKIRIVLSLGAMKEFDIAHAYQDHGAILQCILNKD 202
++ FH LV + N+ + + + ++ I L + ++H I + + K+
Sbjct 136 NQKFHELLVDFSHNRHLKNLLEHVNDLIHFCRILNYTGDHRAETILREHRRIFEEVKKKN 195
Query 203 AEQA--------IHLAEH--HVLE 216
E A H EH HVLE
Sbjct 196 KEAAKQHVLAHFNHDCEHLKHVLE 219
>P54988 Nta operon transcriptional regulator [Aminobacter aminovorans]
Length=210
Score = 70.9 bits (172), Expect = 2e-18
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query 32 NFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEIRPLEFKYYQEL 91
++ +PG+R E +L+ + + SRTP+R+AL RL EGF+ G+ R LE +L
Sbjct 4 SYHFRPGERINEVELAAQLKVSRTPLREALNRLTTEGFLTTTANKGFFARVLEANTLFDL 63
Query 92 FDLRMILEKEAVKRLCELEHPEQLPALIELKKMWLIAPVDYLTDTKTLVLQSEDFHCALV 151
++LR LE+ AV+ C+ +++ L+ L ++ E+FH LV
Sbjct 64 YELRAFLEQSAVRLACQRATDQEIAV---LRDFLLEQDESGEISAGEMLKLDEEFHFRLV 120
Query 152 RAAGNQQIAKIHQEASEKIR 171
+ N+++ K + SE+IR
Sbjct 121 GLSQNEELLKTVRSISERIR 140
>P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=266
Score = 53.9 bits (128), Expect = 3e-12
Identities = 66/240 (28%), Positives = 105/240 (44%), Gaps = 21/240 (9%)
Query 12 KKTSNNISDLIYG----LLKEDIFNFVLKPGQRF-TETDLSERYEASRTPIRQALYRLEQ 66
+K NI + Y LLK+DI + G + TE ++SE++ SRT +R+A+ LE
Sbjct 15 RKNMENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEV 74
Query 67 EGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIELKKMWL 126
E V V SG + + E DL + E ++ LE A ++ K +
Sbjct 75 EKLVEVKKGSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDI 134
Query 127 IAPVDYLTDTKTLVLQSE-------DFHCALVRAAGNQQIAKIHQEASEKIRIVLSLGA- 178
+ L K L+ Q++ DFH AL N + K+ QE + R ++ A
Sbjct 135 LNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL-QEQLWQYRFNSAMWAQ 193
Query 179 ----MKEFDIAHAY-QDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH 233
+ + D H + +DH IL I K+A +A H LE++ +VK L + H
Sbjct 194 LHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQH-LENV-KVKLFELSDVEDPH 251
>P70790 Uncharacterized HTH-type transcriptional regulator in
the TAR-I ttuE-ttuC' intergenic region [Agrobacterium vitis]
Length=171
Score = 49.7 bits (117), Expect = 4e-11
Identities = 35/134 (26%), Positives = 65/134 (49%), Gaps = 3/134 (2%)
Query 23 YGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEIRP 82
Y ++ I V PG + E +++ + SRTP+ +A+ RL+++G V + + G I
Sbjct 37 YHAIRNAIRTNVFPPGYQAAEIEIARQLGMSRTPVHEAMARLQEDGLVRILPKKGIIICA 96
Query 83 LEFKYYQELFDLRMILEKEAVKRLCELEHP--EQLPALIELKKMWLIAPVDYLTDTKTLV 140
L +E++++ + LE A RL ++ P ++ AL+ ++A ++ D
Sbjct 97 LSPADIEEIYEVTIALEGAAASRLAMIDAPVKAEVVALLRDATEAMVAALE-RNDLPGWA 155
Query 141 LQSEDFHCALVRAA 154
E FH LV A
Sbjct 156 AADERFHETLVACA 169
>P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH
[Shigella flexneri]
Length=228
Score = 47.4 bits (111), Expect = 5e-10
Identities = 21/92 (23%), Positives = 46/92 (50%), Gaps = 0/92 (0%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSG 77
++ IY +L+ DI + ++ PG +E ++S R+ SR P+R+A +L + G + + + G
Sbjct 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72
Query 78 WEIRPLEFKYYQELFDLRMILEKEAVKRLCEL 109
+ + + +R +E +R +
Sbjct 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASM 104
Score = 22.3 bits (46), Expect = 0.090
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (6%)
Query 56 PIRQALYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCE 108
P+ Q +YR+ + VH G PL K F++ +EA +L E
Sbjct 12 PVNQQIYRILRRDIVHCLIAPG---TPLSEKEVSVRFNVSRQPVREAFIKLAE 61
>Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=228
Score = 47.4 bits (111), Expect = 5e-10
Identities = 21/92 (23%), Positives = 46/92 (50%), Gaps = 0/92 (0%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSG 77
++ IY +L+ DI + ++ PG +E ++S R+ SR P+R+A +L + G + + + G
Sbjct 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72
Query 78 WEIRPLEFKYYQELFDLRMILEKEAVKRLCEL 109
+ + + +R +E +R +
Sbjct 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASM 104
Score = 22.3 bits (46), Expect = 0.090
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (6%)
Query 56 PIRQALYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCE 108
P+ Q +YR+ + VH G PL K F++ +EA +L E
Sbjct 12 PVNQQIYRILRRDIVHCLIAPG---TPLSEKEVSVRFNVSRQPVREAFIKLAE 61
>P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O157:H7]
Length=228
Score = 47.4 bits (111), Expect = 5e-10
Identities = 21/92 (23%), Positives = 46/92 (50%), Gaps = 0/92 (0%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSG 77
++ IY +L+ DI + ++ PG +E ++S R+ SR P+R+A +L + G + + + G
Sbjct 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72
Query 78 WEIRPLEFKYYQELFDLRMILEKEAVKRLCEL 109
+ + + +R +E +R +
Sbjct 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASM 104
Score = 22.3 bits (46), Expect = 0.090
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (6%)
Query 56 PIRQALYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCE 108
P+ Q +YR+ + VH G PL K F++ +EA +L E
Sbjct 12 PVNQQIYRILRRDIVHCLIAPG---TPLSEKEVSVRFNVSRQPVREAFIKLAE 61
>P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli
(strain K12)]
Length=228
Score = 47.4 bits (111), Expect = 5e-10
Identities = 21/92 (23%), Positives = 46/92 (50%), Gaps = 0/92 (0%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSG 77
++ IY +L+ DI + ++ PG +E ++S R+ SR P+R+A +L + G + + + G
Sbjct 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72
Query 78 WEIRPLEFKYYQELFDLRMILEKEAVKRLCEL 109
+ + + +R +E +R +
Sbjct 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASM 104
Score = 22.3 bits (46), Expect = 0.090
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (6%)
Query 56 PIRQALYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCE 108
P+ Q +YR+ + VH G PL K F++ +EA +L E
Sbjct 12 PVNQQIYRILRRDIVHCLIAPG---TPLSEKEVSVRFNVSRQPVREAFIKLAE 61
>P32425 Uncharacterized HTH-type transcriptional regulator in
unstable DNA locus [Streptomyces ambofaciens]
Length=236
Score = 45.1 bits (105), Expect = 3e-09
Identities = 47/204 (23%), Positives = 81/204 (40%), Gaps = 6/204 (3%)
Query 22 IYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEIR 81
IY L++ + L PG +E +L+ SRTP+R++L L QEG V V + G +
Sbjct 13 IYLKLRQMVLTLELAPGAALSENELAASMGVSRTPVRESLILLAQEGLVQVFPKIGSFVS 72
Query 82 PLEFKYYQELFDLRMILEKEAVKRLCELEHPEQL-PALIELKKMWLIAPVDYLTDTKTLV 140
++ + LR +E ++ L P +L PA++ + L+ D +
Sbjct 73 RVDPARVADAQFLREAVELGSLDAL-----PAELDPAVVGELRDNLVRQGRKDLDLEEFF 127
Query 141 LQSEDFHCALVRAAGNQQIAKIHQEASEKIRIVLSLGAMKEFDIAHAYQDHGAILQCILN 200
E FH L+R +G+ + A + LG + A H I +
Sbjct 128 GLDEAFHQGLMRLSGHGNVWTTVAAAKGHLDRARRLGLHENVSPAVFVAQHREIFDAVTE 187
Query 201 KDAEQAIHLAEHHVLESIHEVKNI 224
D A H+ +++ I
Sbjct 188 GDVPLARTAMRTHLRAVFDDIERI 211
Score = 17.7 bits (34), Expect = 2.8
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query 17 NISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQ 66
N+S ++ +IF+ V TE D+ A RT +R +E+
Sbjct 168 NVSPAVFVAQHREIFDAV-------TEGDVPLARTAMRTHLRAVFDDIER 210
>P9WMG7 Uncharacterized HTH-type transcriptional regulator Rv0494
[Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)]
Length=242
Score = 39.7 bits (91), Expect = 2e-07
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFT-ETDLSERYEASRTPIRQALYRLEQEGFVHVHFRS 76
+ + I + + I + V PG E DL+ER +RT +RQ L RL+Q G + V S
Sbjct 19 VDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS 78
Query 77 GWEIRPLE 84
G +R E
Sbjct 79 GSVVRDPE 86
>P9WMG6 Uncharacterized HTH-type transcriptional regulator MT0514
[Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)]
Length=242
Score = 39.7 bits (91), Expect = 2e-07
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFT-ETDLSERYEASRTPIRQALYRLEQEGFVHVHFRS 76
+ + I + + I + V PG E DL+ER +RT +RQ L RL+Q G + V S
Sbjct 19 VDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS 78
Query 77 GWEIRPLE 84
G +R E
Sbjct 79 GSVVRDPE 86
>P67740 Uncharacterized HTH-type transcriptional regulator Mb0505
[Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)]
Length=242
Score = 39.7 bits (91), Expect = 2e-07
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 18 ISDLIYGLLKEDIFNFVLKPGQRFT-ETDLSERYEASRTPIRQALYRLEQEGFVHVHFRS 76
+ + I + + I + V PG E DL+ER +RT +RQ L RL+Q G + V S
Sbjct 19 VDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS 78
Query 77 GWEIRPLE 84
G +R E
Sbjct 79 GSVVRDPE 86
>Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi]
Length=259
Score = 37.0 bits (84), Expect = 2e-06
Identities = 22/53 (42%), Positives = 30/53 (57%), Gaps = 1/53 (2%)
Query 26 LKEDIFNFVLKPGQRF-TETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSG 77
LK+ I N V G + E ++SE SRT +R+A+ LE EG+V V SG
Sbjct 17 LKQRIENGVYPVGDKLPAERNISEEMNVSRTVVREAIIMLEVEGYVEVRKGSG 69
>Q9S470 Arabinose metabolism transcriptional repressor [Geobacillus
stearothermophilus]
Length=364
Score = 35.4 bits (80), Expect = 6e-06
Identities = 18/54 (33%), Positives = 37/54 (69%), Gaps = 5/54 (9%)
Query 23 YGLLKEDIFNFVL----KPGQRF-TETDLSERYEASRTPIRQALYRLEQEGFVH 71
Y LK++I ++++ KP ++ TE +++ +++ SR +RQAL LE+EG+++
Sbjct 9 YLQLKQEILSWIISGQMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGWLY 62
>O31459 HTH-type transcriptional repressor GamR [Bacillus subtilis
(strain 168)]
Length=235
Score = 34.7 bits (78), Expect = 9e-06
Identities = 14/29 (48%), Positives = 22/29 (76%), Gaps = 0/29 (0%)
Query 42 TETDLSERYEASRTPIRQALYRLEQEGFV 70
TE++ E+Y+ SRT +R AL +LE EG++
Sbjct 29 TESEFCEQYDVSRTTVRLALQQLELEGYI 57
Lambda K H a alpha
0.324 0.138 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 576684
Database: dfa2a7d78ca15a9b609eda2826f8a5e6.SwissProt.fasta
Posted date: May 20, 2024 4:10 PM
Number of letters in database: 3,603
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
