BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 2c9b1d41a326b6bb61e0661ebacbf2f4.SwissProt.fasta
           1 sequences; 4,334 total letters



Query= ACIAD0987

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9SMH5 Cytoplasmic dynein 2 heavy chain 1 [Chlamydomonas reinhard...  32.3    1e-05


>Q9SMH5 Cytoplasmic dynein 2 heavy chain 1 [Chlamydomonas reinhardtii]
Length=4334

 Score = 32.3 bits (72),  Expect = 1e-05
 Identities = 16/45 (36%), Positives = 26/45 (58%), Gaps = 1/45 (2%)

Query  41   KKPTVYEQDFVKHLIQAFASGVTELNDLVDSLNRQGFRRESGEVW  85
            K  T+   D V+H    +A+GV E+ ++   L  +G+ RES +VW
Sbjct  755  KVVTLAGTDLVRHK-DKWAAGVKEMREIFGRLEAEGYSRESQQVW  798


 Score = 19.2 bits (38),  Expect = 0.38
 Identities = 8/29 (28%), Positives = 15/29 (52%), Gaps = 0/29 (0%)

Query  62   VTELNDLVDSLNRQGFRRESGEVWTMQSF  90
            +  + ++VD L +   R E+G +   Q F
Sbjct  361  IYNMREMVDELAKLVGREEAGSLGVQQVF  389


 Score = 17.7 bits (34),  Expect = 1.2
 Identities = 8/15 (53%), Positives = 10/15 (67%), Gaps = 0/15 (0%)

Query  83    EVWTMQSFTEEMQRL  97
             E+  +QS  EE QRL
Sbjct  3128  ELHRLQSSLEESQRL  3142


 Score = 17.3 bits (33),  Expect = 1.7
 Identities = 11/33 (33%), Positives = 18/33 (55%), Gaps = 4/33 (12%)

Query  31   VEHLVW--QTRYKKPTVYEQDFVKHLIQAFASG  61
            VE ++W  QT  K   V E   +KH+++   +G
Sbjct  533  VERIMWCMQTLQKLGKVSE--VLKHMLRGGVAG  563


 Score = 16.9 bits (32),  Expect = 2.3
 Identities = 8/26 (31%), Positives = 15/26 (58%), Gaps = 0/26 (0%)

Query  70    DSLNRQGFRRESGEVWTMQSFTEEMQ  95
             DS+ +   RR+  EV   ++  EE++
Sbjct  2957  DSMLKAADRRKEVEVLKKRTAIEEVE  2982


 Score = 15.0 bits (27),  Expect = 9.9
 Identities = 6/16 (38%), Positives = 10/16 (63%), Gaps = 0/16 (0%)

Query  5     NEKLANWMSPSPSKEA  20
             N K A+ +SP+   +A
Sbjct  2496  NSKTASSVSPAALSKA  2511



Lambda      K        H        a         alpha
   0.322    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275072


  Database: 2c9b1d41a326b6bb61e0661ebacbf2f4.SwissProt.fasta
    Posted date:  Jun 3, 2024  8:07 AM
  Number of letters in database: 4,334
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40