BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 75f28974c0f2d792a7bc94e1efb06ad8.SwissProt.fasta
1 sequences; 394 total letters
Query= ACIAD1001
Length=448
Score E
Sequences producing significant alignments: (Bits) Value
P42514 Uncharacterized protein PA4219 [Pseudomonas aeruginosa (st... 37.7 4e-07
>P42514 Uncharacterized protein PA4219 [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=394
Score = 37.7 bits (86), Expect = 4e-07
Identities = 26/84 (31%), Positives = 41/84 (49%), Gaps = 2/84 (2%)
Query 134 LPLRTFLDRLHRDLWLGEWGRIYSELAASWMGLLALSGIYHWFKRRKQLNQPSEHK--KL 191
+P L LH+ L++G GR+ L + LL L+G+ +R + L + + +L
Sbjct 1 MPALDLLLNLHKSLFVGFPGRVLVSLFGVSLLLLCLAGVLLHSRRWRDLRRWRRDRGLRL 60
Query 192 YLIKWHSWLGLALLPLLLFFSITG 215
L H +G+ LP LL F TG
Sbjct 61 ALFDLHGLIGIWGLPWLLLFGFTG 84
Score = 26.2 bits (56), Expect = 0.002
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query 349 VDAHMGVLFGWTNQLLLILFAIGL---CITIVLAYRIWWQTTDFKKTTIDFSRRAVVMWS 405
++ H + G+ ++L+ LF + L C+ VL + W+ D ++ D R +
Sbjct 8 LNLHKSLFVGFPGRVLVSLFGVSLLLLCLAGVLLHSRRWR--DLRRWRRDRGLRLALFDL 65
Query 406 NGSLIQRVGLVFILMVTGISLPIFGVSILMALMMVMLGY 444
+G LI GL ++L+ G + + G+ L L++ + Y
Sbjct 66 HG-LIGIWGLPWLLLF-GFTGALSGLGALGTLLLAPVAY 102
Score = 23.5 bits (49), Expect = 0.011
Identities = 51/221 (23%), Positives = 72/221 (33%), Gaps = 64/221 (29%)
Query 11 WRDL------------LVLLHRYAGIFIAPFIFVAAFTGLLYVLTPQLEQWTYRDVLVSQ 58
WRDL L LH GI+ P++ + FTG L L L+
Sbjct 46 WRDLRRWRRDRGLRLALFDLHGLIGIWGLPWLLLFGFTGALSGLGA-------LGTLLLA 98
Query 59 ATSQPKSLTEQIQAAQSVMSPTAQIMAVRPAATSHDTTRVIYSDPQQQ---MANRAIFID 115
+ P+ E + +M P RP A+ D R++ D + +A R
Sbjct 99 PVAYPQ---EPNRVFVELMGPPPPAAEGRPLASRIDLDRLLAGDAVRAPGFVAQRLSL-- 153
Query 116 PHDLKVKGQLAVYGTSGILPLRTFLDR----------------LHRDLWLGEWGRI---- 155
H V G + + G LP +R R WL + +
Sbjct 154 SHAGDVAGSVEIAGIRRGLPSTANFERHRYRLADGTLLGERSSAQRGFWLRAFIAVQPLH 213
Query 156 ---YSELAASW----------MG----LLALSGIYHWFKRR 179
Y L W MG LL SG+Y W +RR
Sbjct 214 FAQYQWLGPGWSAALRGLHLAMGLGACLLCASGLYLWLQRR 254
Score = 18.9 bits (37), Expect = 0.30
Identities = 18/79 (23%), Positives = 31/79 (39%), Gaps = 15/79 (19%)
Query 358 GWTNQL--LLILFAIGLCITIVLAYRIWWQTTDFKKTTIDFSRRAVVMWSNGSLIQRVGL 415
GW+ L L + +G C+ +W Q RRA + L+QR+
Sbjct 223 GWSAALRGLHLAMGLGACLLCASGLYLWLQ------------RRASAPDARVRLLQRLSQ 270
Query 416 VFIL-MVTGISLPIFGVSI 433
F +V +L + G+ +
Sbjct 271 GFCAGLVAAAALLLLGLQL 289
Score = 16.2 bits (30), Expect = 2.1
Identities = 14/43 (33%), Positives = 21/43 (49%), Gaps = 3/43 (7%)
Query 338 FPLAAKLTRWGVDAHMGVLFGWTNQLLLILFAIGLCITIVLAY 380
F L + WG+ + LFG+T L L A+G + +AY
Sbjct 63 FDLHGLIGIWGLPWLL--LFGFTG-ALSGLGALGTLLLAPVAY 102
Score = 15.4 bits (28), Expect = 3.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
Query 13 DLLVLLHRYAGIFIAPFIFVAAFTGLLYVL 42
DLL+ LH+ + + V+ F L +L
Sbjct 5 DLLLNLHKSLFVGFPGRVLVSLFGVSLLLL 34
Lambda K H a alpha
0.327 0.136 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 150592
Database: 75f28974c0f2d792a7bc94e1efb06ad8.SwissProt.fasta
Posted date: May 20, 2024 10:30 PM
Number of letters in database: 394
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
