Comparative Genomics

ACIAD1010 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 274d85b2de5dbffb77bf94440835c84e.SwissProt.fasta
           25 sequences; 4,996 total letters



Query= ACIAD1010

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B4SHW1 HTH-type transcriptional regulator BetI [Stenotrophomonas ...  212     1e-73
A4XPI7 HTH-type transcriptional regulator BetI [Pseudomonas mendo...  187     7e-64
Q9HTJ0 HTH-type transcriptional regulator BetI [Pseudomonas aerug...  187     8e-64
Q02DY8 HTH-type transcriptional regulator BetI [Pseudomonas aerug...  187     8e-64
B7V5R5 HTH-type transcriptional regulator BetI [Pseudomonas aerug...  187     8e-64
A6VEI5 HTH-type transcriptional regulator BetI [Pseudomonas aerug...  187     8e-64
Q3K5H5 HTH-type transcriptional regulator BetI [Pseudomonas fluor...  186     2e-63
Q1QXD9 HTH-type transcriptional regulator BetI 1 [Chromohalobacte...  186     3e-63
C3K3D1 HTH-type transcriptional regulator BetI [Pseudomonas fluor...  182     1e-61
Q4ZM61 HTH-type transcriptional regulator BetI [Pseudomonas syrin...  181     3e-61
Q48CM5 HTH-type transcriptional regulator BetI [Pseudomonas savas...  181     3e-61
Q88AF0 HTH-type transcriptional regulator BetI [Pseudomonas syrin...  180     4e-61
Q4K4K9 HTH-type transcriptional regulator BetI [Pseudomonas fluor...  179     2e-60
B4EX96 HTH-type transcriptional regulator BetI [Proteus mirabilis...  176     1e-59
Q9L4K2 HTH-type transcriptional regulator BetI 2 [Chromohalobacte...  170     7e-57
P17446 HTH-type transcriptional regulator BetI [Escherichia coli ...  155     2e-51
O69786 HTH-type transcriptional regulator BetI [Rhizobium melilot...  97.4    1e-28
O34381 HTH-type transcriptional regulator PksA [Bacillus subtilis...  53.5    3e-12
O07001 Uncharacterized HTH-type transcriptional regulator YvdT [B...  40.0    1e-07
Q9R9T9 HTH-type transcriptional regulator SrpR [Pseudomonas putida]   37.7    8e-07
O34970 Probable HTH-type transcriptional regulator YttP [Bacillus...  37.4    1e-06
P9WMC3 HTH-type transcriptional repressor Rv3405c [Mycobacterium ...  37.0    1e-06
P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium tu...  37.0    1e-06


>B4SHW1 HTH-type transcriptional regulator BetI [Stenotrophomonas 
maltophilia (strain R551-3)]
Length=196

 Score = 212 bits (539),  Expect = 1e-73
 Identities = 108/196 (55%), Positives = 144/196 (73%), Gaps = 4/196 (2%)

Query  1    MNKRRVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLIN  60
            M K+ V+P  VRRE+++ A ++ I E+G+++ T+A IAKKA LS GIV+HYFGDK GL+N
Sbjct  1    MPKKGVEP--VRREQLIRATFQTIDEIGMADATVATIAKKAGLSSGIVAHYFGDKDGLLN  58

Query  61   ACMLEMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMH  120
            A M ++L  L+   A+Y+A+  D  P   ++AI+D NFD SQ+N  AMR+WL FW+ASMH
Sbjct  59   AAMRQILRELKEAVARYRADAGDD-PRDQLRAIVDGNFDDSQINGTAMRVWLTFWAASMH  117

Query  121  MPELSRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDS  180
             PEL+RLQR NDQRL+SNL   F  L+P  QA +AARGLAA+IDGLWLRGSL     F++
Sbjct  118  QPELARLQRANDQRLFSNLCHQFNRLLPHPQARLAARGLAAMIDGLWLRGSL-VGGQFNA  176

Query  181  TLARSIAYDYVDTQLK  196
              +R IAY Y+D QL+
Sbjct  177  EKSRRIAYGYIDFQLQ  192


>A4XPI7 HTH-type transcriptional regulator BetI [Pseudomonas mendocina 
(strain ymp)]
Length=196

 Score = 187 bits (475),  Expect = 7e-64
 Identities = 92/191 (48%), Positives = 132/191 (69%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR +++ A  E + +VG+++ ++A IA+ A +S GI+SHYF DK GL+ A M 
Sbjct  3    KVGMQPIRRSQLIAATLEAVDQVGMADASIAYIARLAGVSNGIISHYFNDKNGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++  L     + +  + +  P + ++A+ID NFD SQV+  AM+ WL FW++SMH P L
Sbjct  63   HLMQALSAAVGKRRRALDEDSPRAHLRAMIDGNFDDSQVSGPAMKTWLAFWASSMHQPAL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQR+ND RLYSNL   F  ++P+DQA  AARGLA+LIDGLWLRG+LS +  FD+  AR
Sbjct  123  RRLQRVNDHRLYSNLCGQFRRVLPQDQARFAARGLASLIDGLWLRGALSGE-AFDTEQAR  181

Query  185  SIAYDYVDTQL  195
             IAYDY+D QL
Sbjct  182  RIAYDYLDLQL  192


>Q9HTJ0 HTH-type transcriptional regulator BetI [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=197

 Score = 187 bits (475),  Expect = 8e-64
 Identities = 93/191 (49%), Positives = 131/191 (69%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR ++++A  E + +VG+ + ++A IA+ A +S GI+SHYF DK GL+ A M 
Sbjct  3    KVGMQPIRRSQLIHATLEAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +L+ L +   + +A + D  P + ++AI++ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   HLLSALSKAVRERRAALYDDSPRAHLRAIVEGNFDDSQVNGPAMKTWLAFWATSMHQPAL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQR+ND RLYSNL + F   +  D A  AARGLAALIDGLWLRG+L+ D  FD+  A 
Sbjct  123  RRLQRVNDHRLYSNLCYQFRRQLSADDARAAARGLAALIDGLWLRGALTGD-AFDTDEAL  181

Query  185  SIAYDYVDTQL  195
            +IAYDY+D QL
Sbjct  182  NIAYDYLDQQL  192


>Q02DY8 HTH-type transcriptional regulator BetI [Pseudomonas aeruginosa 
(strain UCBPP-PA14)]
Length=197

 Score = 187 bits (475),  Expect = 8e-64
 Identities = 93/191 (49%), Positives = 131/191 (69%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR ++++A  E + +VG+ + ++A IA+ A +S GI+SHYF DK GL+ A M 
Sbjct  3    KVGMQPIRRSQLIHATLEAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +L+ L +   + +A + D  P + ++AI++ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   HLLSALSKAVRERRAALYDDSPRAHLRAIVEGNFDDSQVNGPAMKTWLAFWATSMHQPAL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQR+ND RLYSNL + F   +  D A  AARGLAALIDGLWLRG+L+ D  FD+  A 
Sbjct  123  RRLQRVNDHRLYSNLCYQFRRQLSADDARAAARGLAALIDGLWLRGALTGD-AFDTDEAL  181

Query  185  SIAYDYVDTQL  195
            +IAYDY+D QL
Sbjct  182  NIAYDYLDQQL  192


>B7V5R5 HTH-type transcriptional regulator BetI [Pseudomonas aeruginosa 
(strain LESB58)]
Length=197

 Score = 187 bits (475),  Expect = 8e-64
 Identities = 93/191 (49%), Positives = 131/191 (69%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR ++++A  E + +VG+ + ++A IA+ A +S GI+SHYF DK GL+ A M 
Sbjct  3    KVGMQPIRRSQLIHATLEAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +L+ L +   + +A + D  P + ++AI++ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   HLLSALSKAVRERRAALYDDSPRAHLRAIVEGNFDDSQVNGPAMKTWLAFWATSMHQPAL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQR+ND RLYSNL + F   +  D A  AARGLAALIDGLWLRG+L+ D  FD+  A 
Sbjct  123  RRLQRVNDHRLYSNLCYQFRRQLSADDARAAARGLAALIDGLWLRGALTGD-AFDTDEAL  181

Query  185  SIAYDYVDTQL  195
            +IAYDY+D QL
Sbjct  182  NIAYDYLDQQL  192


>A6VEI5 HTH-type transcriptional regulator BetI [Pseudomonas aeruginosa 
(strain PA7)]
Length=197

 Score = 187 bits (475),  Expect = 8e-64
 Identities = 93/191 (49%), Positives = 131/191 (69%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR ++++A  E + +VG+ + ++A IA+ A +S GI+SHYF DK GL+ A M 
Sbjct  3    KVGMQPIRRSQLIHATLEAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +L+ L +   + +A + D  P + ++AI++ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   HLLSALSKAVRERRAALYDDSPRAHLRAIVEGNFDDSQVNGPAMKTWLAFWATSMHQPAL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQR+ND RLYSNL + F   +  D A  AARGLAALIDGLWLRG+L+ D  FD+  A 
Sbjct  123  RRLQRVNDHRLYSNLCYQFRRQLSADDARAAARGLAALIDGLWLRGALTGD-AFDTDEAL  181

Query  185  SIAYDYVDTQL  195
            +IAYDY+D QL
Sbjct  182  NIAYDYLDQQL  192


>Q3K5H5 HTH-type transcriptional regulator BetI [Pseudomonas fluorescens 
(strain Pf0-1)]
Length=197

 Score = 186 bits (472),  Expect = 2e-63
 Identities = 94/191 (49%), Positives = 130/191 (68%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A  + + +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIEATLQAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLIAATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +++VL       +  + DS P + ++ II+ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   YLMSVLSENVTARRQALADSSPRAHLQVIIEGNFDASQVNGPAMKTWLAFWATSMHQPSL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRIND RLYSNL   F  ++P + A  AARGLAALIDGLWLRG+LS D  FD+  A+
Sbjct  123  HRLQRINDHRLYSNLCCEFRRVLPLEDARTAARGLAALIDGLWLRGALSGD-AFDTAQAQ  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  QIAYEYMDFQL  192


>Q1QXD9 HTH-type transcriptional regulator BetI 1 [Chromohalobacter 
salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 
/ NCIMB 13768 / 1H11)]
Length=202

 Score = 186 bits (472),  Expect = 3e-63
 Identities = 96/185 (52%), Positives = 130/185 (70%), Gaps = 2/185 (1%)

Query  11   VRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVL  70
            +RR +++ A  E I +VGL++ T+A+IAK+A +S GI+SHYFG K GL+ + M ++L  L
Sbjct  9    IRRRQLIQATLETIDDVGLADATIARIAKRAGVSAGIISHYFGGKDGLLESAMRQILWDL  68

Query  71   RRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPELSRLQRI  130
                A+ +A+  +S P   I+AIID NFD SQVN+  M+ WL FWS SMH P+L RLQR+
Sbjct  69   GDAVARRRAQGVES-PREHIRAIIDGNFDRSQVNKTVMKTWLAFWSVSMHRPDLQRLQRV  127

Query  131  NDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLARSIAYDY  190
            ND+ LYSNL  HF   +P+ +A  AARGLAA+IDGLWLRG+L+     D   AR +AYDY
Sbjct  128  NDRWLYSNLCHHFRRCLPRPEAQQAARGLAAMIDGLWLRGALAPQ-GIDVDRARQLAYDY  186

Query  191  VDTQL  195
            V+ QL
Sbjct  187  VEEQL  191


>C3K3D1 HTH-type transcriptional regulator BetI [Pseudomonas fluorescens 
(strain SBW25)]
Length=197

 Score = 182 bits (461),  Expect = 1e-61
 Identities = 95/191 (50%), Positives = 128/191 (67%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A    I +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIEATLTAIDQVGMGDASIALIARLAGVSNGIISHYFKDKNGLIAATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++N L     + +  + D  P + ++ II+ NFD SQVN  AM+ WL FW+ SMH P L
Sbjct  63   YLMNALIDNVHERRLALTDDSPRAHLQVIIEGNFDASQVNGPAMKTWLAFWATSMHHPSL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRINDQRLYSNL   F  ++P   A  AARGLAALIDGLWLRG+LS D  FD+  A+
Sbjct  123  HRLQRINDQRLYSNLCCQFRRVLPLPHARKAARGLAALIDGLWLRGALSGD-AFDTAQAQ  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  RIAYEYMDFQL  192


>Q4ZM61 HTH-type transcriptional regulator BetI [Pseudomonas syringae 
pv. syringae (strain B728a)]
Length=197

 Score = 181 bits (458),  Expect = 3e-61
 Identities = 92/191 (48%), Positives = 129/191 (68%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A    + +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIQATLTAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLIAATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++N L +   + +  + +  P + ++ II+ NFD SQV+  AM+ WL FW+ SMH P L
Sbjct  63   HLMNALIQNVRERRQALTEDSPRAHLQVIIEGNFDASQVSGPAMKTWLAFWATSMHHPSL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRIND RLYSNL   F   +P +QA  AARGLAALIDGLWLRG+LS D  FD+  A+
Sbjct  123  HRLQRINDHRLYSNLCCQFRRTLPLEQARSAARGLAALIDGLWLRGALSGD-AFDTEQAQ  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  RIAYEYMDFQL  192


>Q48CM5 HTH-type transcriptional regulator BetI [Pseudomonas savastanoi 
pv. phaseolicola (strain 1448A / Race 6)]
Length=197

 Score = 181 bits (458),  Expect = 3e-61
 Identities = 92/191 (48%), Positives = 129/191 (68%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A    + +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIQATLTAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLIAATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++N L +   + +  + +  P + ++ II+ NFD SQV+  AM+ WL FW+ SMH P L
Sbjct  63   HLMNALIQNVRERRQALTEDSPRAHLQVIIEGNFDASQVSGPAMKTWLAFWATSMHHPSL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRIND RLYSNL   F   +P +QA  AARGLAALIDGLWLRG+LS D  FD+  A+
Sbjct  123  HRLQRINDHRLYSNLCCQFRRTLPLEQARSAARGLAALIDGLWLRGALSGD-AFDTEQAQ  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  RIAYEYMDFQL  192


>Q88AF0 HTH-type transcriptional regulator BetI [Pseudomonas syringae 
pv. tomato (strain ATCC BAA-871 / DC3000)]
Length=197

 Score = 180 bits (457),  Expect = 4e-61
 Identities = 92/191 (48%), Positives = 129/191 (68%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A    + +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIQATLTAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLIAATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++N L +   + +  + +  P + ++ II+ NFD SQV+  AM+ WL FW+ SMH P L
Sbjct  63   HLMNALIQNVRERRQALTEDSPRAHLQVIIEGNFDASQVSGPAMKTWLAFWATSMHHPSL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRIND RLYSNL   F   +P +QA  AARGLAALIDGLWLRG+LS D  FD+  A+
Sbjct  123  HRLQRINDHRLYSNLCCQFRRTLPLEQARNAARGLAALIDGLWLRGALSGD-AFDTEQAQ  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  RIAYEYMDFQL  192


>Q4K4K9 HTH-type transcriptional regulator BetI [Pseudomonas fluorescens 
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=197

 Score = 179 bits (453),  Expect = 2e-60
 Identities = 93/191 (49%), Positives = 128/191 (67%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  + +RR++++ A  + + +VG+ + ++A IA+ A +S GI+SHYF DK GLI A M 
Sbjct  3    KVGMQPIRRQQLIEATLQAVDQVGMGDASIALIARLAGVSNGIISHYFRDKNGLIAATMG  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             ++++L       +  + D  P + +K II+ NFD SQVN  AM+ WL FW++SMH P+L
Sbjct  63   YIMSMLNEGVRARRQALTDDSPRAHLKVIIEGNFDASQVNGPAMKTWLAFWASSMHQPDL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQRIND RLYSNL   F   +P   A  AARGLAALIDGLWLRG+LS D  FD+  A 
Sbjct  123  HRLQRINDHRLYSNLCCQFRRALPLYHARKAARGLAALIDGLWLRGALSGD-AFDTDQAI  181

Query  185  SIAYDYVDTQL  195
             IAY+Y+D QL
Sbjct  182  RIAYEYMDLQL  192


>B4EX96 HTH-type transcriptional regulator BetI [Proteus mirabilis 
(strain HI4320)]
Length=200

 Score = 176 bits (447),  Expect = 1e-59
 Identities = 88/193 (46%), Positives = 130/193 (67%), Gaps = 1/193 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            ++  + +R+++++ A   VI EVG+ + ++A IA+KA +S GI+SHYF DK GL+ A M 
Sbjct  3    KIGMQSIRKQQLIQATLAVINEVGMQDASIALIARKAGVSNGIISHYFRDKNGLLEAAMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
             +   L    A     + D+ P+  I+AI+D NFD SQ ++ AM+ WL FW++SMH P L
Sbjct  63   HIQYQLGFAVAMRLRILSDAEPKLRIQAIVDGNFDTSQTSETAMKTWLAFWASSMHQPNL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQ++ND+RLYSNL + F   + KD+A +AA+GLAALIDGLWLR +LS++  F    A+
Sbjct  123  HRLQKVNDRRLYSNLCYEFGRALTKDKARLAAKGLAALIDGLWLRSALSEE-PFSLAEAK  181

Query  185  SIAYDYVDTQLKL  197
             I  +Y+D QL L
Sbjct  182  KITDEYIDMQLNL  194


>Q9L4K2 HTH-type transcriptional regulator BetI 2 [Chromohalobacter 
salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 
/ NCIMB 13768 / 1H11)]
Length=207

 Score = 170 bits (430),  Expect = 7e-57
 Identities = 89/191 (47%), Positives = 125/191 (65%), Gaps = 1/191 (1%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  E +RR++++ A    I EVGL+  T+ +IA+ A +S GI+SHYFG K GL+ A M 
Sbjct  3    KVGMEPIRRQQLIKATMAAIDEVGLAEATVMRIARHAGVSAGIISHYFGGKDGLLEATMR  62

Query  65   EMLNVLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPEL  124
            ++L  L    A  +  ++D  P + I AII+ NFD +QV   A + WL FW++SMH P L
Sbjct  63   QILTDLSDAVAARRHALEDDSPRAHIGAIIEGNFDRTQVTGPAAKTWLAFWASSMHKPVL  122

Query  125  SRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLAR  184
             RLQ +ND+RLY+NL   F  +MPK  A  AARGLAA+IDGLWLRG+L+ +   D+  AR
Sbjct  123  QRLQYVNDRRLYANLCHQFQRVMPKADARNAARGLAAMIDGLWLRGALTPE-GLDAAEAR  181

Query  185  SIAYDYVDTQL  195
             +A+ Y+D  L
Sbjct  182  YLAHTYLDQLL  192


>P17446 HTH-type transcriptional regulator BetI [Escherichia coli 
(strain K12)]
Length=195

 Score = 155 bits (392),  Expect = 2e-51
 Identities = 80/187 (43%), Positives = 117/187 (63%), Gaps = 1/187 (1%)

Query  9    EHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLN  68
            + +RR ++++A  E I EVG+ + T+AQIA++A +S GI+SHYF DK GL+ A M ++ +
Sbjct  7    QSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFRDKNGLLEATMRDITS  66

Query  69   VLRRKTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPELSRLQ  128
             LR         +     E  ++AI+  NFD +QV+  AM+ WL FW++SMH P L RLQ
Sbjct  67   QLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQPMLYRLQ  126

Query  129  RINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSLSQDTTFDSTLARSIAY  188
            +++ +RL SNL   F   +P++QA  A  GLAALIDGLWLR +LS     D T A S+  
Sbjct  127  QVSSRRLLSNLVSEFRRELPREQAQEAGYGLAALIDGLWLRAALS-GKPLDKTRANSLTR  185

Query  189  DYVDTQL  195
             ++   L
Sbjct  186  HFITQHL  192


>O69786 HTH-type transcriptional regulator BetI [Rhizobium meliloti 
(strain 1021)]
Length=203

 Score = 97.4 bits (241),  Expect = 1e-28
 Identities = 69/194 (36%), Positives = 102/194 (53%), Gaps = 7/194 (4%)

Query  5    RVKPEHVRREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACML  64
            +V  E VRR+ +V+AA  VI + G    TM++IA+ A +S  +  HYFG K+ L+ A + 
Sbjct  3    KVGMEPVRRKALVDAALRVIGDQGTLAVTMSEIARTAGVSPALAHHYFGSKEQLLIATIR  62

Query  65   EMLNVLRRKT-AQYKAEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPE  123
             +L  LR    A  KA      P   + A+I  +F   Q     +  WL F+S +    E
Sbjct  63   SLLGKLRDDAVAAMKAAAT---PRERVSALIRVSFRADQFAPETVAAWLAFYSEAQRSEE  119

Query  124  LSRLQRINDQRLYSNLKFHFLELMPKDQASIAARGLAALIDGLWLRGSL-SQDTTFDSTL  182
            + RL  I  +RL SNL      L P D A   A G AA+IDGL++R SL S   + ++++
Sbjct  120  VRRLLVIYARRLRSNLLVGLRALCPADDAERIAEGAAAMIDGLYIRQSLKSAPISIEASV  179

Query  183  ARSIAYDYVDTQLK  196
            A  +  DYV+  L+
Sbjct  180  A--LTEDYVNAHLR  191


>O34381 HTH-type transcriptional regulator PksA [Bacillus subtilis 
(strain 168)]
Length=205

 Score = 53.5 bits (127),  Expect = 3e-12
 Identities = 46/165 (28%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query  12   RREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVLR  71
            RR++I  A + VI E G+   +   IAK+A LS+G + HYF  +  L+      M  V  
Sbjct  10   RRKQIAEATWRVILERGMEGASARNIAKEAGLSLGALRHYFSTQDELL---AFAMKLVQE  66

Query  72   RKTAQYK-AEVQDSHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPELSRLQRI  130
            + T + K   V+D  P+  +  I+      ++   R M +W  F + + H  ++      
Sbjct  67   KVTDRIKDIAVRDLLPKEKVLQILLEMVPTNEETIREMEVWFAFTAYARHKKDMFDASHD  126

Query  131  NDQRLYSNLKFHFLE---LMPKDQASIAARGLAALIDGLWLRGSL  172
                   NL  +  E   L       I A  L AL+DGL L   L
Sbjct  127  GIFSGMRNLIAYLDESDLLKQNADKDIEAERLYALVDGLALHAML  171


>O07001 Uncharacterized HTH-type transcriptional regulator YvdT 
[Bacillus subtilis (strain 168)]
Length=194

 Score = 40.0 bits (92),  Expect = 1e-07
 Identities = 30/90 (33%), Positives = 44/90 (49%), Gaps = 4/90 (4%)

Query  14   EEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVLRRK  73
            E+I+ AA EVI E GL   +++ I KKA  + G    YF  K  LI A      N+L   
Sbjct  10   EKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAI---AENLLTHT  66

Query  74   TAQYKAEVQ-DSHPESMIKAIIDSNFDISQ  102
              Q K  +  D    +++  +ID  F I++
Sbjct  67   LDQIKGRLHGDEDFWTVLDILIDETFLITE  96


>Q9R9T9 HTH-type transcriptional regulator SrpR [Pseudomonas putida]
Length=213

 Score = 37.7 bits (86),  Expect = 8e-07
 Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)

Query  13  REEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACM  63
           R+ I++AA EV    G+S+ T+ QIA+KA ++ G V  +F  K  ++ A +
Sbjct  13  RQRIIDAALEVFVAQGVSDATLDQIARKAGVTRGAVYWHFNGKLEVLQAVL  63


>O34970 Probable HTH-type transcriptional regulator YttP [Bacillus 
subtilis (strain 168)]
Length=207

 Score = 37.4 bits (85),  Expect = 1e-06
 Identities = 23/85 (27%), Positives = 45/85 (53%), Gaps = 3/85 (4%)

Query  13  REEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVLRR  72
           +++I+ +A  +  + G S T++ +IAK A ++V  +S+YF  K GL+   + E      +
Sbjct  6   KDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFYEGYSK  65

Query  73  --KTAQYKAEVQDSHPESMIKAIID  95
             +TA      Q S  E +++ + D
Sbjct  66  TLETAASNISTQ-STQEQLLQLVFD  89


>P9WMC3 HTH-type transcriptional repressor Rv3405c [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=188

 Score = 37.0 bits (84),  Expect = 1e-06
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query  16   IVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVLRR---  72
            I+ AA ++  E G + T++  IA +++++ G+V  +FG K  L+ A +  +   L R   
Sbjct  23   ILQAATDLFAERGPAATSIRDIAARSKVNHGLVFRHFGTKDQLVGAVLDHLGTKLTRLLH  82

Query  73   --KTAQYKAEVQDSHPESMIKAIIDSNFDISQVNQR  106
                A       D H   + +A++D  + + Q+ QR
Sbjct  83   SEAPADIIERALDRHGRVLARALLD-GYPVGQLQQR  117


 Score = 16.5 bits (31),  Expect = 7.7
 Identities = 14/55 (25%), Positives = 24/55 (44%), Gaps = 3/55 (5%)

Query  147  MPKDQASIAARGLAALIDGLWLRGSLS---QDTTFDSTLARSIAYDYVDTQLKLV  198
            MP  +  +AA  L A  D    RG  +   +D    S +   + + +  T+ +LV
Sbjct  12   MPTGREEVAAAILQAATDLFAERGPAATSIRDIAARSKVNHGLVFRHFGTKDQLV  66


>P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=200

 Score = 37.0 bits (84),  Expect = 1e-06
 Identities = 29/124 (23%), Positives = 59/124 (48%), Gaps = 4/124 (3%)

Query  12   RREEIVNAAYEVIFEVGLSNTTMAQIAKKAQLSVGIVSHYFGDKQGLINACMLEMLNVLR  71
            RR E++  A  +  E GL  TT+  IA  A +  G + H+F  K+ +++  +   L+ L 
Sbjct  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWL-  69

Query  72   RKTAQYKAEVQD-SHPESMIKAIIDSNFDISQVNQRAMRIWLDFWSASMHMPELSRLQRI  130
               A+Y+  V   ++P   ++ +  ++F+  + +   + I+ D        P  S ++  
Sbjct  70   --FARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDR  127

Query  131  NDQR  134
            N Q+
Sbjct  128  NKQQ  131



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658982


  Database: 274d85b2de5dbffb77bf94440835c84e.SwissProt.fasta
    Posted date:  May 9, 2024  8:30 PM
  Number of letters in database: 4,996
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40