BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 86815848a8dec4969fed1856ef17bb7b.SwissProt.fasta
11 sequences; 15,337 total letters
Query= ACIAD1078
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
D4G3R4 tRNA(Glu)-specific nuclease WapA [Bacillus subtilis subsp.... 100 6e-25
P0DUH5 Double-stranded DNA deaminase toxin A [Burkholderia cenoce... 100 9e-25
Q07833 tRNA nuclease WapA [Bacillus subtilis (strain 168)] 92.0 4e-22
P16918 Protein RhsC [Escherichia coli (strain K12)] 85.5 4e-20
G4NYJ6 tRNA3(Ser)-specific nuclease WapA [Bacillus spizizenii (st... 84.7 8e-20
P24211 Putative protein RhsE [Escherichia coli (strain K12)] 82.8 2e-19
Q9I0F4 Toxin protein Tse5 [Pseudomonas aeruginosa (strain ATCC 15... 83.2 2e-19
P32109 Putative uncharacterized protein YibJ [Escherichia coli (s... 78.6 3e-19
P77779 Putative uncharacterized protein YbfO [Escherichia coli (s... 79.7 1e-18
P16917 Protein RhsB [Escherichia coli (strain K12)] 80.5 1e-18
P16916 Protein RhsA [Escherichia coli (strain K12)] 79.3 3e-18
>D4G3R4 tRNA(Glu)-specific nuclease WapA [Bacillus subtilis subsp.
natto (strain BEST195)]
Length=2347
Score = 100 bits (250), Expect = 6e-25
Identities = 126/499 (25%), Positives = 199/499 (40%), Gaps = 72/499 (14%)
Query 6 DGTSSSGYGYNKAGQMIVQTRVI-KGTNYQTNWAFDNYGRLISENFANDSYKVSYGYD-- 62
+GT + Y+K G +T V+ K N FDN RL S +Y D
Sbjct 1768 NGTEKYNFTYDKNGN---ETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSD 1824
Query 63 ---TLS------------RINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTS 107
T S N + I+ D S Y+ G ++++ GN + S
Sbjct 1825 KLKTFSWTHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFS 1884
Query 108 FDKDYRITGI-----NTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKST 162
+D+ ++ + N +I S+ Y+ N + +++S + Y Y + QL K T
Sbjct 1885 YDERNLVSSLHIGDKNGGSILTESYEYDANGNRTTINSS--ASGKVKYEYGKLNQLVKET 1942
Query 163 STQ-YIESWTFDKNSNRSTRV---GNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNL 218
+ +T+D NR T ++ T N NI N+L T +S +YD GN
Sbjct 1943 HEDGTVIEYTYDGFGNRKTVTTVKDGSSKTVNASFNIMNQL---TKVNDESISYDKNGNR 1999
Query 219 IKKTGHGGTVDYSYDGFNRLKTV-KAGSNS--TNYDYDVFNLRTRKTGGAGNVNYIYSPD 275
G Y++D + L V K G + Y YD R +KT NY Y D
Sbjct 2000 TSD----GKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGD 2055
Query 276 GRLLGESNTSDTNISTAYVWL-YGQVIGVVRNNTLNFVH-NDHLGRPEVLTNLSKTVV-- 331
+ +D N++ +Y + GQ++ N F H N H + + KTV
Sbjct 2056 SLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDVIAISDSTGKTVAKY 2115
Query 332 ----WKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPI 387
W + + S+ ++ + ++ G YD E+GL+Y RY++ G + DP
Sbjct 2116 QYDAWGNPTKTEASDEVKDNRYRY----AGYQYDEETGLYYLMARYYEPRNGVFLSLDPD 2171
Query 388 GLAGG----VNTYTYVGNNPVNFIDPYGLWSLSIEGYYGVGGGASI-----SYNNGTLEV 438
+ G N YTY NNPV +DP G W ++ V G ++ +Y +G
Sbjct 2172 PGSDGDSLDQNGYTYGNNNPVMNVDPDGHWV-----WFVVNAGFAVYDGYKAYKSG---- 2222
Query 439 TGKLGVGLGAGVGLDPNGK 457
G GV + A G GK
Sbjct 2223 KGWKGVAVAAASGFVGGGK 2241
Score = 53.9 bits (128), Expect = 3e-10
Identities = 66/294 (22%), Positives = 123/294 (42%), Gaps = 39/294 (13%)
Query 26 RVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRIQGADKDVVKSI 85
R+I+G+ T +D+ G +++ Y S YD T K + K +
Sbjct 1615 RLIEGS-LLTKSTYDSNGNYVTKEEDELGYATSTDYD-----ETGKKTAETDAKGEKTTY 1668
Query 86 TYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVN 145
TY+ + + T N + S+DK+ A ++ Y + + V + +
Sbjct 1669 TYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKYEYDVMGKLVKTTDPLG 1728
Query 146 RSATYTYDAIGQLTKSTS------------TQYIES----------WTFDKNSNRSTRVG 183
YDA LTK+ S T ++S +T+DKN N ++ V
Sbjct 1729 NVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYNFTYDKNGNETSVVN 1788
Query 184 NTNLTTNYQTNIGNRLASTTITE---AKSFTYDVLGNLIKKTG--HG---GTVDYSYDGF 235
TT +T N+ T +T+ ++++TY + +K HG GT ++Y+
Sbjct 1789 KEQNTTKKRT-FDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWTHGDQKGTNQFTYNKL 1847
Query 236 NRLKTVKAGSNSTNYDYDV-FNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTN 288
+++ +K ++S ++DYD N++T TG G ++ Y + L+ + D N
Sbjct 1848 DQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYD-ERNLVSSLHIGDKN 1900
Score = 46.2 bits (108), Expect = 7e-08
Identities = 63/264 (24%), Positives = 108/264 (41%), Gaps = 36/264 (14%)
Query 103 TRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKST 162
T T FD D R+ I + K ++ N N + D E+ + + YD G+ T T
Sbjct 1606 TGTVWFD-DIRL--IEGSLLTKSTYDSNGNYVTKEED---ELGYATSTDYDETGKKTAET 1659
Query 163 STQYIES-WTFDKNSNRS--TRVGNTNLTTNYQTNIGNRLASTTITEAKS---FTYDVLG 216
+ ++ +T+D+ + T T++ +Y GN ++ T A + YDV+G
Sbjct 1660 DAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKE-GNEVSKTIRAGADQTYKYEYDVMG 1718
Query 217 NLIKKTGHGGTVDYS-YDGFNRL-KTVKAGSNSTNYDYD-VFNLRTRKTGGAGNVNYIYS 273
L+K T G V S YD + L KT+ N + YD ++++ G N+ Y
Sbjct 1719 KLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYNFTYD 1778
Query 274 PDGR----LLGESNTSD-------------TNISTAYVWLYGQVIGVVRNNTLNFVHNDH 316
+G + E NT+ T+ + W Y ++ T ++ H D
Sbjct 1779 KNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLK--TFSWTHGDQ 1836
Query 317 LGRPEVLTN-LSKTVVWKSQNNSY 339
G + N L + + K +SY
Sbjct 1837 KGTNQFTYNKLDQMIEMKDSTSSY 1860
Score = 42.0 bits (97), Expect = 1e-06
Identities = 64/298 (21%), Positives = 117/298 (39%), Gaps = 39/298 (13%)
Query 15 YNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRI 74
+NK G + +V+ G N T + +++ +L + A+ K+++ YD + ++
Sbjct 1023 FNKKGGKL--QKVVDGHNNATVYTYNDKNQLTAITDASGR-KLTFTYDENGHVTSIT--- 1076
Query 75 QGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNL 134
K+ K +TY +Y NDL + + D D +T + + +L Y+ N+
Sbjct 1077 --GPKN--KKVTY---------SYENDLLKKVT-DTDGTVTSYDYDGEGRLVKQYSANST 1122
Query 135 ISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTN 194
+ V Y+ + + + Y+ S+ DK + T+ + Y
Sbjct 1123 -----EAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYN-E 1176
Query 195 IGN-----------RLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKTVKA 243
GN ++ + T E + DV N + TG T Y YD + +VK
Sbjct 1177 AGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVG-TGKA-TESYQYDKDGNVTSVKD 1234
Query 244 GSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVI 301
+ Y+Y+ N T+ GNV I + E++ S + S A YG I
Sbjct 1235 AYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQI 1292
Score = 34.7 bits (78), Expect = 2e-04
Identities = 68/284 (24%), Positives = 99/284 (35%), Gaps = 67/284 (24%)
Query 149 TYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRV--GNTNLTTNYQTNIGNRLASTTITE 206
T T D TK + Y F+K + +V G+ N T Y N N+L T IT+
Sbjct 1005 TETADQFILKTKDQTNAY-----FNKKGGKLQKVVDGHNNATV-YTYNDKNQL--TAITD 1056
Query 207 AK----SFTYDVLGNLIKKTG-HGGTVDYSYDGFNRLKTVKAGSNSTNYDYDVFNLRTRK 261
A +FTYD G++ TG V YSY+ K T+YDYD
Sbjct 1057 ASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYD-------- 1108
Query 262 TGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRPE 321
G G + YS + +T + T Y + ++ + +V++ +
Sbjct 1109 --GEGRLVKQYSAN-------STEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADK-- 1157
Query 322 VLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGT-VGR 380
KT++ N + G G P Q D GL N ++G V
Sbjct 1158 ------KTLLMTQPNGR------KVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVE 1205
Query 381 YTQPDPIGL--------------------AGGVNTYTYVGNNPV 404
P+ +G A G TY Y NN V
Sbjct 1206 DVDPNDVGTGKATESYQYDKDGNVTSVKDAYGTETYEYNKNNDV 1249
Score = 28.5 bits (62), Expect = 0.018
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 35/168 (21%)
Query 13 YGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFAND----SYKVSYGYDTLSRIN 68
YGYN+AG I +G TN ++ ++ + ND SY YD +
Sbjct 1172 YGYNEAGNPIQVIDDAEGLKITTNTKYEG-NNVVEDVDPNDVGTGKATESYQYDKDGNVT 1230
Query 69 TVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHS 128
+V KD + TYE + ND+T+ D + +T I +
Sbjct 1231 SV--------KDAYGTETYE-------YNKNNDVTKMK--DTEGNVTDI----------A 1263
Query 129 YNINNLISNVDNSLEVNRSATY-TYDAIGQLTK--STSTQYIESWTFD 173
Y+ + +S D S + + +A Y Y Q +K S ST ++ +F+
Sbjct 1264 YDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFE 1311
Score = 23.5 bits (49), Expect = 0.62
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 37/152 (24%)
Query 5 SDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTL 64
+D + Y Y +GQ++ T G Y + ++ +G +I+ + + Y YD
Sbjct 2065 ADNNVTKSYTYGDSGQLLSYTE--NGKKY--FYHYNAHGDVIAISDSTGKTVAKYQYDAW 2120
Query 65 SRINTVKVRIQGADKD-----------------VVKSITYEPYGGIKSWTYGNDLTRTTS 107
N K KD + + YEP G+ S
Sbjct 2121 G--NPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGV-----------FLS 2167
Query 108 FDKDYRITGINTEAIQKLSHSYNINNLISNVD 139
D D G + +++ + ++Y NN + NVD
Sbjct 2168 LDPD---PGSDGDSLDQNGYTYGNNNPVMNVD 2196
Score = 21.2 bits (43), Expect = 3.2
Identities = 34/160 (21%), Positives = 57/160 (36%), Gaps = 17/160 (11%)
Query 87 YEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEV-- 144
YE G K Y + + + D D+ I+ E + S N I N D ++
Sbjct 99 YEGDGVYKQEVYLDPIHTKETPDADWE--DISPELKESTSKQVETENAILNSDFQKQMKN 156
Query 145 ---------NRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVG---NTNLTT-NY 191
+ TY+ K++ T S + +SN N +L T +
Sbjct 157 GLYATFEHNDHKVTYSLVEAKAPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTF 216
Query 192 QTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYS 231
NI L +FT+ + +L K G++D+S
Sbjct 217 NENIKEDLVLHQYDGYNTFTFQLKTDLQAKEQEDGSIDFS 256
Score = 20.8 bits (42), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (54%), Gaps = 0/26 (0%)
Query 242 KAGSNSTNYDYDVFNLRTRKTGGAGN 267
KA S +T Y VFN + +T GN
Sbjct 657 KAVSGATGYKVQVFNGKGFETLDLGN 682
Score = 20.0 bits (40), Expect = 7.1
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 0/76 (0%)
Query 109 DKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIE 168
DK ++G I S S ++ S+ ++E+ + TYT + + + Y
Sbjct 1333 DKSGVLSGSKALEILSQSTSAGTDHGFSSATQTVELEPNTTYTLSGKIKTDLAKTRAYFN 1392
Query 169 SWTFDKNSNRSTRVGN 184
DK+ R + N
Sbjct 1393 IDLRDKDQKRIQWIHN 1408
Score = 19.6 bits (39), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (2%)
Query 7 GTSSSGYGYNKAGQMIVQTRVIK-GTNYQTNWAFDNYGRLISENFANDSYKVS 58
G SSS Y+K G I ++ + TN + +F+ + + DS K+S
Sbjct 1277 GKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKIS 1329
>P0DUH5 Double-stranded DNA deaminase toxin A [Burkholderia cenocepacia
(strain H111)]
Length=1427
Score = 100 bits (248), Expect = 9e-25
Identities = 121/464 (26%), Positives = 189/464 (41%), Gaps = 81/464 (17%)
Query 39 FDNYGRLISENFANDSYKVSYGYDTLSRI--------NTVKVRIQGADK--------DVV 82
+D GRL++E+ +N S V Y D L + T+++ G+ VV
Sbjct 864 YDKGGRLVAEHGSNGS--VIYTLDELDNVVSLGLPHDQTLQMLRYGSGHVHQIRFGDQVV 921
Query 83 KSITYEPYGGIKSWTYGNDLTRTTSFD----KDYRITGINTEAIQK----LSHSYNINNL 134
+ S T G LT+ + +D K ++ GI+ E + + L +Y +
Sbjct 922 ADFERDDLHREVSRTQGR-LTQRSGYDPLGRKVWQSAGIDPEMLGRGSGQLWRNYGYDGA 980
Query 135 ISNVDNSLEVNRSATYTYDAIGQLTKSTST--QYIESWTFDKNSNRSTRVGNTNLTTNYQ 192
++ S + S ++YD G+L + + E + +D N + Y
Sbjct 981 GDLIETSDSLRGSTRFSYDPAGRLISRANPLDRKFEEFAWDAAGNLLDDAQRKS--RGYV 1038
Query 193 TNIGNRLASTTITEAKSFTYDVLGNLI-KKTGHGGTVDYSYDGFNRLKTVKA----GSNS 247
GNRL + + F YD GNL K+ G T ++YDG +RL TV G
Sbjct 1039 E--GNRLL---MWQDLRFEYDPFGNLATKRRGANQTQRFTYDGQDRLITVHTQDVRGVVE 1093
Query 248 TNYDYDVFNLRTRKTGGA-----------------------------GNVNYIYSPDGRL 278
T + YD R KT A G +Y+YSPD
Sbjct 1094 TRFAYDPLGRRIAKTDTAFDLRGMKLRAETKRFVWEGLRLVQEVRETGVSSYVYSPDAPY 1153
Query 279 LGESNTSDTNISTAYVWLYGQVIGVVRNNTLNF-VHNDHLGRPEVLTNLSKTVVWKSQNN 337
+ +DT ++ A L VI + F H D +G P+ +T+ + V W Q
Sbjct 1154 SPVAR-ADTVMAEA---LAATVIDSAKRAARIFHFHTDPVGAPQEVTDEAGEVAWAGQYA 1209
Query 338 SYD-----SNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGG 392
++ + + ++ + GQY D +GL YN R++D VGR+ DPIGL GG
Sbjct 1210 AWGKVEATNRGVTAARTDQPLRFAGQYADDSTGLHYNTFRFYDPDVGRFINQDPIGLNGG 1269
Query 393 VNTYTYVGNNPVNFIDPYGLWSLSIEGYYGVGGGASISYNNGTL 436
N Y Y NPV ++DP+GL G Y + +YN T+
Sbjct 1270 ANVYHY-APNPVGWVDPWGLAGSYALGPYQISAPQLPAYNGQTV 1312
Score = 31.2 bits (69), Expect = 0.003
Identities = 21/78 (27%), Positives = 30/78 (38%), Gaps = 2/78 (3%)
Query 207 AKSFTYDVLGNLIKKTGHGGTVDYSYDGF--NRLKTVKAGSNSTNYDYDVFNLRTRKTGG 264
+++F YD G L++ G GG V ++ V Y YDV
Sbjct 693 SETFEYDAAGTLVRYIGLGGRVQELLRNARGQLIEAVDPAGRRVQYRYDVEGRLRELQQD 752
Query 265 AGNVNYIYSPDGRLLGES 282
+ YS GRLL E+
Sbjct 753 HARYTFTYSAGGRLLTET 770
Score = 28.5 bits (62), Expect = 0.018
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query 161 STSTQYIESWTFDKNSNRSTRVGNTNL-TTNYQTNIGNRLASTT------------ITEA 207
+T + + + F+++ +V T T YQ + G+RL + +A
Sbjct 800 ATGNRSVRTIRFERDRMGVLKVQRTPTEVTRYQHDKGDRLVKVERVPTPSGIALGIVPDA 859
Query 208 KSFTYDVLGNLIKKTGHGGTVDYSYD 233
F YD G L+ + G G+V Y+ D
Sbjct 860 VEFEYDKGGRLVAEHGSNGSVIYTLD 885
Score = 25.8 bits (55), Expect = 0.12
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 23/163 (14%)
Query 147 SATYTYDAIGQLTKSTSTQ--YIESWTFDKNSNRSTRVGNTNLTTNY---QTNIGNRLAS 201
+ TY YD GQL T + + + N ++ + T++Y + R+
Sbjct 414 AVTYGYDENGQLASVTDANGAVVRQFAY-TNGLMTSHMNALGFTSSYVWSKIEGEPRVVE 472
Query 202 TTITEAKSFT--YDVLGNLIK-KTGHGGTVDYSYDGFNRLKTVKAGSNSTNYDYDVFNLR 258
T +E +++T YDV G + + G T + +D +++ T+ D + ++
Sbjct 473 THTSEGENWTFEYDVAGRQTRVRHADGRTAHWRFDAQSQI------VEYTDLDGAFYRIK 526
Query 259 TRKTG--------GAGNVNYIYSPDGRLLGESNTSDTNISTAY 293
G G V + Y GR++ E++ T Y
Sbjct 527 YDAVGMPVMLMLPGDRTVMFEYDDAGRIIAETDPLGRTTRTRY 569
Score = 22.3 bits (46), Expect = 1.4
Identities = 28/129 (22%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query 42 YGRLISENFANDSYK---VSYGYDTLSRINTVKVRIQGADKDVVKSITYEPYGGIKSWTY 98
+GRL + ++ + V+YGYD ++ +V A+ VV+ Y G+ + ++
Sbjct 397 FGRLGTVTLVHEDERRLAVTYGYDENGQLASV----TDANGAVVRQFAYT--NGLMT-SH 449
Query 99 GNDLTRTTSF-----DKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYD 153
N L T+S+ + + R+ +T + + Y++ + V ++ R+A + +D
Sbjct 450 MNALGFTSSYVWSKIEGEPRVVETHTSEGENWTFEYDVAGRQTRVRHA--DGRTAHWRFD 507
Query 154 AIGQLTKST 162
A Q+ + T
Sbjct 508 AQSQIVEYT 516
Score = 19.6 bits (39), Expect = 9.2
Identities = 10/36 (28%), Positives = 16/36 (44%), Gaps = 0/36 (0%)
Query 391 GGVNTYTYVGNNPVNFIDPYGLWSLSIEGYYGVGGG 426
GG TY V + ++ W+ ++ G G GG
Sbjct 149 GGTQTYLPVDDEVPPWLRTATDWAFTLAGLVGGLGG 184
Score = 19.6 bits (39), Expect = 9.2
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (9%)
Query 13 YGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENF--ANDSYKVSYGYDTLSR 66
+ Y+ G + + R G N + +D RLI+ + + + YD L R
Sbjct 1051 FEYDPFGNLATKRR---GANQTQRFTYDGQDRLITVHTQDVRGVVETRFAYDPLGR 1103
>Q07833 tRNA nuclease WapA [Bacillus subtilis (strain 168)]
Length=2334
Score = 92.0 bits (227), Expect = 4e-22
Identities = 136/542 (25%), Positives = 211/542 (39%), Gaps = 83/542 (15%)
Query 6 DGTSSSGYGYNKAGQMIVQTRVI-KGTNYQTNWAFDNYGRLISENFANDSYKVSYGYD-- 62
+GT + Y+K G +T V+ K N FDN RL S +Y D
Sbjct 1755 NGTEKYIFTYDKNGN---ETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSD 1811
Query 63 ---TLSRI------------NTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTS 107
T S I N + I+ D S Y+ G ++++ GN + S
Sbjct 1812 KLKTFSWIHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFS 1871
Query 108 FDKDYRITGI-----NTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKST 162
+D+ ++ + N I S+ Y+ N + +++S + Y Y + QL K T
Sbjct 1872 YDERNLVSSLHIGDKNGGDILTESYEYDANGNRTTINSS--ASGKVQYEYGKLNQLVKET 1929
Query 163 STQ-YIESWTFDKNSNRSTRV---GNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNL 218
+ +T+D NR T ++ T N NI N+L T +S +YD GN
Sbjct 1930 HEDGTVIEYTYDGFGNRKTVTTIKDGSSKTVNASFNIMNQL---TKVNDESISYDKNGNR 1986
Query 219 IKKTGHGGTVDYSYDGFNRLKTV-KAGSNS--TNYDYDVFNLRTRKTGGAGNVNYIYSPD 275
G Y++D + L V K G + Y YD R +KT NY Y D
Sbjct 1987 TSD----GKFTYTWDAEDNLTAVTKKGEDKPFATYKYDEKGNRIQKTVNGKVTNYFYDGD 2042
Query 276 GRLLGESNTSDTNISTAYVWL-YGQVIGVVRNNTLNFVH-NDHLGRPEVLTNLSKTVV-- 331
+ +D N++ +Y + GQ++ N F H N H + + KTV
Sbjct 2043 SLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDIIAISDSTGKTVAKY 2102
Query 332 ----WKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPI 387
W + + S+ ++ + ++ G YD E+GL+Y RY++ G + DP
Sbjct 2103 QYDAWGNPTKTEASDEVKDNRYRY----AGYQYDEETGLYYLMARYYEPRNGVFLSLDPD 2158
Query 388 GLAGG----VNTYTYVGNNPVNFIDPYGLWS-LSIEGYYGVGGGASISYNNGTLEVTGKL 442
+ G N Y Y NNPV +DP G W L + + G +Y +G G
Sbjct 2159 PGSDGDSLDQNGYAYGNNNPVMNVDPDGHWVWLVVNAGFAAYDGYK-AYKSGK----GWK 2213
Query 443 GVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMGAGIGPIEATLFGVSGYTGNGLV 502
G A P GK K A S A T ++ ++G+T +GL
Sbjct 2214 GAAWAAASNFGP-GKIFKGA----SRAYKFTKKAVK--------------ITGHTRHGLN 2254
Query 503 QS 504
QS
Sbjct 2255 QS 2256
Score = 75.5 bits (184), Expect = 6e-17
Identities = 115/532 (22%), Positives = 196/532 (37%), Gaps = 135/532 (25%)
Query 5 SDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTL 64
S+GTS + Y+K G + +T + G + + +D G+L+ + S YD
Sbjct 1669 SNGTSIL-HSYDKEGNEVSKT-IRAGADQTYKFEYDVMGKLVKTTDPLGNVLASE-YDAN 1725
Query 65 SRINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITG-INTEAIQ 123
S + T + G + S++Y+ +KS +Y ++DK+ T +N E
Sbjct 1726 SNL-TKTISPNGNEV----SLSYDGTDRVKSKSYNGTEKYIFTYDKNGNETSVVNKEQNT 1780
Query 124 KLSHSYNINNLISNVDNS--------------------LEVNRSAT--YTYDAIGQLTKS 161
+++ N ++ + + + ++ T +TY+ + Q+ +
Sbjct 1781 TKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWIHGDQKGTNQFTYNKLDQMIEM 1840
Query 162 TSTQYIESWTFDKNSN----------------------RSTRVGNTN----LTTNYQTNI 195
+ S+ +D+N N S +G+ N LT +Y+ +
Sbjct 1841 KDSTSSYSFDYDENGNVQTFITGNGGGTSFSYDERNLVSSLHIGDKNGGDILTESYEYDA 1900
Query 196 -GNRLASTTITEAK-SFTYDVLGNLIKKTGHGGTV-DYSYDGFNRLKTV----------- 241
GNR + K + Y L L+K+T GTV +Y+YDGF KTV
Sbjct 1901 NGNRTTINSSASGKVQYEYGKLNQLVKETHEDGTVIEYTYDGFGNRKTVTTIKDGSSKTV 1960
Query 242 -----------KAGSNSTNYD-------------------------------------YD 253
K S +YD YD
Sbjct 1961 NASFNIMNQLTKVNDESISYDKNGNRTSDGKFTYTWDAEDNLTAVTKKGEDKPFATYKYD 2020
Query 254 VFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVW-LYGQVIGVVRNNTLNFV 312
R +KT NY Y D + +D N++ +Y + GQ++ N F
Sbjct 2021 EKGNRIQKTVNGKVTNYFYDGDSLNVLYETDADNNVTKSYTYGDSGQLLSYTENGKKYFY 2080
Query 313 H-NDHLGRPEVLTNLSKTV------VWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESG 365
H N H + + KTV W + + S+ ++ + ++ G YD E+G
Sbjct 2081 HYNAHGDIIAISDSTGKTVAKYQYDAWGNPTKTEASDEVKDNRYRY----AGYQYDEETG 2136
Query 366 LWYNWNRYFDGTVGRYTQPDPIGLAGG----VNTYTYVGNNPVNFIDPYGLW 413
L+Y RY++ G + DP + G N Y Y NNPV +DP G W
Sbjct 2137 LYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYAYGNNNPVMNVDPDGHW 2188
Score = 52.4 bits (124), Expect = 8e-10
Identities = 71/297 (24%), Positives = 125/297 (42%), Gaps = 45/297 (15%)
Query 26 RVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRIQGADKDVVKSI 85
R+I+G+ T +D+ G +++ Y S YD T K + K +
Sbjct 1602 RLIEGS-LLTKSTYDSNGNYVTKEEDELGYATSTDYD-----ETGKKTSETDAKGEKTTY 1655
Query 86 TYEPYGGIKSWTYGNDLTRTTSFDKDYRITG--INTEAIQKLSHSYNI-NNLISNVDNSL 142
TY+ + + T N + S+DK+ I A Q Y++ L+ D
Sbjct 1656 TYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGADQTYKFEYDVMGKLVKTTDPLG 1715
Query 143 EVNRSATYTYDAIGQLTKSTS------------TQYIES----------WTFDKNSNRST 180
V S YDA LTK+ S T ++S +T+DKN N ++
Sbjct 1716 NVLAS---EYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYIFTYDKNGNETS 1772
Query 181 RVGNTNLTTNYQTNIGNRLASTTITE---AKSFTYDVLGNLIKKTG--HG---GTVDYSY 232
V TT +T N+ T +T+ ++++TY + +K HG GT ++Y
Sbjct 1773 VVNKEQNTTKKRT-FDNKNRLTELTDRGGSQTWTYPSDSDKLKTFSWIHGDQKGTNQFTY 1831
Query 233 DGFNRLKTVKAGSNSTNYDYDV-FNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTN 288
+ +++ +K ++S ++DYD N++T TG G ++ Y + L+ + D N
Sbjct 1832 NKLDQMIEMKDSTSSYSFDYDENGNVQTFITGNGGGTSFSYD-ERNLVSSLHIGDKN 1887
Score = 45.4 bits (106), Expect = 1e-07
Identities = 63/264 (24%), Positives = 108/264 (41%), Gaps = 36/264 (14%)
Query 103 TRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKST 162
T T FD D R+ I + K ++ N N + D E+ + + YD G+ T T
Sbjct 1593 TGTVWFD-DIRL--IEGSLLTKSTYDSNGNYVTKEED---ELGYATSTDYDETGKKTSET 1646
Query 163 STQYIES-WTFDKNSNRS--TRVGNTNLTTNYQTNIGNRLASTTITEAKS---FTYDVLG 216
+ ++ +T+D+ + T T++ +Y GN ++ T A F YDV+G
Sbjct 1647 DAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKE-GNEVSKTIRAGADQTYKFEYDVMG 1705
Query 217 NLIKKTGHGGTVDYS-YDGFNRL-KTVKAGSNSTNYDYD-VFNLRTRKTGGAGNVNYIYS 273
L+K T G V S YD + L KT+ N + YD ++++ G + Y
Sbjct 1706 KLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGTDRVKSKSYNGTEKYIFTYD 1765
Query 274 PDGR----LLGESNTSD-------------TNISTAYVWLYGQVIGVVRNNTLNFVHNDH 316
+G + E NT+ T+ + W Y ++ T +++H D
Sbjct 1766 KNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDKLK--TFSWIHGDQ 1823
Query 317 LGRPEVLTN-LSKTVVWKSQNNSY 339
G + N L + + K +SY
Sbjct 1824 KGTNQFTYNKLDQMIEMKDSTSSY 1847
Score = 42.4 bits (98), Expect = 1e-06
Identities = 64/298 (21%), Positives = 118/298 (40%), Gaps = 39/298 (13%)
Query 15 YNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRI 74
+NK G + +V+ G N T + +++ +L + A+ K+++ YD + ++
Sbjct 1010 FNKKGGKL--QKVVDGHNNATVYTYNDKNQLTAITDASGR-KLTFTYDENGHVTSIT--- 1063
Query 75 QGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNL 134
K+ K +TY +Y NDL + + D D +T + ++ +L Y+ N+
Sbjct 1064 --GPKN--KKVTY---------SYENDLLKKVT-DTDGTVTSYDYDSEGRLVKQYSANST 1109
Query 135 ISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTN 194
+ V Y+ + + + Y+ S+ DK + T+ + Y
Sbjct 1110 -----EAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYN-E 1163
Query 195 IGN-----------RLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKTVKA 243
GN ++ + T E + DV N + TG T Y YD + +VK
Sbjct 1164 AGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVG-TGKA-TESYQYDKDGNVTSVKD 1221
Query 244 GSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVI 301
+ Y+Y+ N T+ GNV I + E++ S + S A YG I
Sbjct 1222 AYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQI 1279
Score = 35.0 bits (79), Expect = 2e-04
Identities = 61/270 (23%), Positives = 95/270 (35%), Gaps = 68/270 (25%)
Query 145 NRSATYTYDAIGQLTKSTSTQYIE-SWTFDKNSNRSTRVG--NTNLTTNYQTNIGNRLAS 201
N + YTY+ QLT T + ++T+D+N + ++ G N +T +Y+ ++ ++
Sbjct 1025 NNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTD 1084
Query 202 TTITEAKSFTYDVLGNLIKKTGHGGT------VDYSYDGFNRLKTVKAGSNSTNYDYDVF 255
T T S+ YD G L+K+ T +Y Y G K + A + Y YD
Sbjct 1085 TDGT-VTSYDYDSEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDAD 1143
Query 256 NLRTRKTGGAGN-VNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHN 314
T G V Y Y+ G + QVI
Sbjct 1144 KKTLLMTQPNGRKVQYGYNEAGNPI-------------------QVI------------- 1171
Query 315 DHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYF 374
D ++ TN K + N+ +V + +G G + Y +
Sbjct 1172 DDAEGLKITTNT------KYEGNNVVEDVDPNDVGT---GKATESYQYDK---------- 1212
Query 375 DGTVGRYTQPDPIGLAGGVNTYTYVGNNPV 404
DG V A G TY Y NN V
Sbjct 1213 DGNVTSVKD------AYGTETYEYNKNNDV 1236
Score = 33.1 bits (74), Expect = 7e-04
Identities = 72/269 (27%), Positives = 100/269 (37%), Gaps = 72/269 (27%)
Query 149 TYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRV--GNTNLTTNYQTNIGNRLASTTITE 206
T T D TK + Y F+K + +V G+ N T Y N N+L T IT+
Sbjct 992 TETADQFILKTKDQTNAY-----FNKKGGKLQKVVDGHNNATV-YTYNDKNQL--TAITD 1043
Query 207 AK----SFTYDVLGNLIKKTG-HGGTVDYSYDGFNRLKTVKAGSNSTNYDYDVFNLRTRK 261
A +FTYD G++ TG V YSY+ K T+YDYD
Sbjct 1044 ASGRKLTFTYDENGHVTSITGPKNKKVTYSYENDLLKKVTDTDGTVTSYDYD-------- 1095
Query 262 TGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRPE 321
+GRL+ + + + T + + ++ H R E
Sbjct 1096 ------------SEGRLVKQYSANSTEAKPVFT---------------EYQYSGH--RLE 1126
Query 322 VLTNLSK-TVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGR 380
N K T V+ SYD++ + Q N G QY E+G N + D
Sbjct 1127 KAINAKKETYVY-----SYDADKKTLLMTQPN-GRKVQYGYNEAG---NPIQVID----- 1172
Query 381 YTQPDPIGLAGGVNTYTYVGNNPVNFIDP 409
D GL NT Y GNN V +DP
Sbjct 1173 ----DAEGLKITTNT-KYEGNNVVEDVDP 1196
Score = 28.5 bits (62), Expect = 0.018
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 35/168 (21%)
Query 13 YGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFAND----SYKVSYGYDTLSRIN 68
YGYN+AG I +G TN ++ ++ + ND SY YD +
Sbjct 1159 YGYNEAGNPIQVIDDAEGLKITTNTKYEG-NNVVEDVDPNDVGTGKATESYQYDKDGNVT 1217
Query 69 TVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHS 128
+V KD + TYE + ND+T+ D + +T I +
Sbjct 1218 SV--------KDAYGTETYE-------YNKNNDVTKMK--DTEGNVTDI----------A 1250
Query 129 YNINNLISNVDNSLEVNRSATY-TYDAIGQLTK--STSTQYIESWTFD 173
Y+ + +S D S + + +A Y Y Q +K S ST ++ +F+
Sbjct 1251 YDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFE 1298
Score = 21.6 bits (44), Expect = 2.4
Identities = 34/160 (21%), Positives = 57/160 (36%), Gaps = 17/160 (11%)
Query 87 YEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEV-- 144
YE G K Y + + + D D+ I+ E + S N I N D ++
Sbjct 86 YEGDGVYKQEVYLDPIHTKETPDADWE--DISPELKESTSKQVETENAILNSDFQKQMKN 143
Query 145 ---------NRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVG---NTNLTT-NY 191
+ TY+ K++ T S + +SN N +L T +
Sbjct 144 GLYATFEHNDHKVTYSLAEAKGPNKTSLTPKDTSADYKTDSNEIVYPDVFPNIDLQTFTF 203
Query 192 QTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYS 231
NI L +FT+ + +L K G++D+S
Sbjct 204 NENIKEDLVLHQYNGYNTFTFQLKTDLQAKEQEDGSIDFS 243
Score = 20.8 bits (42), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (54%), Gaps = 0/26 (0%)
Query 242 KAGSNSTNYDYDVFNLRTRKTGGAGN 267
KA S +T Y VFN + +T GN
Sbjct 644 KAVSGATGYKVQVFNGKGFETLDLGN 669
Score = 20.4 bits (41), Expect = 5.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 0/76 (0%)
Query 109 DKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIE 168
DK ++G + S S ++ S+ ++E+ + TYT + + S Y
Sbjct 1320 DKSGVLSGSKALEVLSQSTSAGTDHGYSSATQTVELEPNTTYTLSGKIKTDLAKSRAYFN 1379
Query 169 SWTFDKNSNRSTRVGN 184
DK+ R + N
Sbjct 1380 IDLRDKDQKRIQWIHN 1395
Score = 19.6 bits (39), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (2%)
Query 7 GTSSSGYGYNKAGQMIVQTRVIK-GTNYQTNWAFDNYGRLISENFANDSYKVS 58
G SSS Y+K G I ++ + TN + +F+ + + DS K+S
Sbjct 1264 GKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKIS 1316
>P16918 Protein RhsC [Escherichia coli (strain K12)]
Length=1397
Score = 85.5 bits (210), Expect = 4e-20
Identities = 49/120 (41%), Positives = 69/120 (58%), Gaps = 4/120 (3%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++ H DH G P L + T W ++ + + + + + + Q I LPGQ YD ESGL
Sbjct 1143 IHLYHCDHRGLPLALISTEGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGL 1202
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWSLS-IEGYYGVGG 425
+YN +RY+D GRY DPIGL GG N Y Y NP++ IDP GL +L I+ + +GG
Sbjct 1203 YYNRHRYYDPLQGRYITQDPIGLKGGWNFYQY-PLNPISNIDPLGLETLKCIKPLHSMGG 1261
Score = 49.3 bits (116), Expect = 7e-09
Identities = 73/323 (23%), Positives = 119/323 (37%), Gaps = 44/323 (14%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDT 63
T DG +S+ Y YN Q+ T + +D +GRLI E A D Y YD
Sbjct 458 TPDGRASAFY-YNHHSQL---TSATGPDGLEIRREYDEWGRLIQET-APDGDITRYRYDN 512
Query 64 LSRINTVKVRIQGADKDVV---KSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTE 120
+ A +D K++T+ YG + S+T + D+ ++T ++ E
Sbjct 513 PHS------DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQVTAVHRE 566
Query 121 AIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRST 180
+Y+ + V ++ Y Y+A G LT + + T ++
Sbjct 567 EGLSQYRAYDSRGQLIAVKDTQ--GHETRYEYNAAGDLTTVIAPDGSRNGTQYDAWGKAI 624
Query 181 RVGNTNLTTNYQTNIGNRLASTTITEAK--SFTYDVLGNLIKKTGHGG-TVDYSYDGFNR 237
LT + + + R+ T +F YDVL LI++TG G T Y +D +
Sbjct 625 CTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGK 684
Query 238 LKTVKAGSNSTNYDYDVFNLRTRKT-------------------------GGAGNVNYIY 272
L + T++ YD + T +T G V+Y Y
Sbjct 685 LIRSEDEGLVTHWHYDEADRLTHRTVNGETAERWQYDERGWLTDISHISEGHRVTVHYGY 744
Query 273 SPDGRLLGESNTSDTNISTAYVW 295
GRL E T + +W
Sbjct 745 DSKGRLASEHLTVHHPQTNELLW 767
Score = 37.7 bits (86), Expect = 3e-05
Identities = 68/312 (22%), Positives = 123/312 (39%), Gaps = 59/312 (19%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFA---NDSYKVSYG 60
T +G ++ + Y++ G + + + +G ++ +D+ GRL SE+ + ++ +
Sbjct 709 TVNGETAERWQYDERGWLTDISHISEGHRVTVHYGYDSKGRLASEHLTVHHPQTNELLWQ 768
Query 61 YDTLSRINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDL--TRTTSFDKD------- 111
++T N + + D + ++ + YG W G L T + +D
Sbjct 769 HETRHAYNAQGLANR-CIPDSLPAVEWLTYGS--GWLSGMKLGDTPLVEYTRDRLHRETL 825
Query 112 -----YRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQY 166
Y +T T A Q S ++N+L+S+ D YT++ G+L + +S +
Sbjct 826 RSFGRYELTTAYTPAGQL--QSQHLNSLLSDRD----------YTWNDNGELIRISSPRQ 873
Query 167 IESWTFDKNSNRS---TRVGNTNLTTNYQTN-IGNRLASTTI--TEAKSFTYDVLGNLIK 220
S+++ + T N ++ Y T+ GNRL + A S D N I
Sbjct 874 TRSYSYSTTGRLTGVHTTAANLDIRIPYTTDPAGNRLPDPELHPDSALSMWPD---NRIA 930
Query 221 KTGHGGTVDYSYDGFNRLK---------TVKAGSNSTN-YDYD-----VFNLRTRKTGGA 265
+ H Y YD RL ++ T+ Y YD V RT+
Sbjct 931 RDAH---YLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPL 987
Query 266 GNVNYIYSPDGR 277
Y+Y P GR
Sbjct 988 VESRYLYDPLGR 999
Score = 33.9 bits (76), Expect = 4e-04
Identities = 72/304 (24%), Positives = 117/304 (38%), Gaps = 51/304 (17%)
Query 37 WAFDNYGRLISE-NFANDSYKVSYGYD------TLSRINTVKVRIQGADKDVVK------ 83
+ +D+ GR+ + N A SY Y D +L+R + + +G K VVK
Sbjct 359 YRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEGGLKRVVKKEHADG 418
Query 84 SITYEPYGGIKSWTYGNDLT-RTTSFDKDY---RITGINTEAIQKLSHSYNINNLISNV- 138
S+T + + D RTT + D IT I T + + YN ++ +++
Sbjct 419 SVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLTSAT 478
Query 139 -DNSLEVNRSATYTYDAIGQLTKSTS-----TQY--------IESWTFDKNSNRST---- 180
+ LE+ R YD G+L + T+ T+Y + T D +R T
Sbjct 479 GPDGLEIRRE----YDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWS 534
Query 181 RVGN-------TNLTTNYQTNIGNRLASTTITEAKS--FTYDVLGNLIK-KTGHGGTVDY 230
R G + T Y + ++ + E S YD G LI K G Y
Sbjct 535 RYGQLLSFTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRY 594
Query 231 SYDGFNRLKTVKAGSNSTN-YDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNI 289
Y+ L TV A S N YD + T G + Y GR++ ++ + ++
Sbjct 595 EYNAAGDLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIRLTSENGSHT 654
Query 290 STAY 293
+ Y
Sbjct 655 TFRY 658
Score = 20.4 bits (41), Expect = 5.4
Identities = 16/54 (30%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query 205 TEAKSFTYD--VLGNLI--KKTGHGGTVDYSYDGFNRL-KTVKAGSNSTNYDYD 253
T+ +SFTYD G ++ + TG + Y YD R+ + + S Y Y+
Sbjct 331 TQVRSFTYDDKYRGRMVAHRHTGR-PEICYRYDSDGRVTEQLNPAGLSYTYQYE 383
>G4NYJ6 tRNA3(Ser)-specific nuclease WapA [Bacillus spizizenii
(strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049
/ TU-B-10)]
Length=2335
Score = 84.7 bits (208), Expect = 8e-20
Identities = 99/419 (24%), Positives = 161/419 (38%), Gaps = 63/419 (15%)
Query 6 DGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLS 65
D ++ + YNK QMI +K + ++ +D G + + S+ YD
Sbjct 1822 DQKGTNQFTYNKLDQMI----EMKDSTSSYSFDYDENGN-VQTFITGNGGGTSFSYD--- 1873
Query 66 RINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKL 125
++++V S+ G G+ LT + +D + T IN+ A K+
Sbjct 1874 ------------ERNLVSSLHIGDKNG------GSILTESYEYDANGNRTTINSSASGKV 1915
Query 126 SHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVGNT 185
+ Y N + V + E YTYD G T+ + +
Sbjct 1916 QYEYGKLNQL--VKETHEDGTVIEYTYDGFGNRKTVTTVK-----------------DGS 1956
Query 186 NLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKTV-KAG 244
+ T N NI N+L T +S +YD GN G Y++D + L V K G
Sbjct 1957 SKTVNASFNIMNQL---TKVNDESISYDKNGNRTS----DGKFTYTWDAEDNLTAVTKKG 2009
Query 245 SNS--TNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVW-LYGQVI 301
+ Y YD R +KT NY Y D + +D ++ +Y + GQ++
Sbjct 2010 EDKPFATYKYDEKGNRIQKTVNGNVTNYFYDGDSLNVLYETDADNKVTKSYTYGDSGQLL 2069
Query 302 GVVRNNTLNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDS---NVIQSSIGQFNIGLPGQ 358
N F H + G +++ S + K Q +++ + + G
Sbjct 2070 SYTENGKKYFYHYNAHGDVIAISDSSGKTLAKYQYDAWGNPTKTEASDEVKDNRYRYAGY 2129
Query 359 YYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGG----VNTYTYVGNNPVNFIDPYGLW 413
YD E+GL+Y RY++ G + DP + G N Y Y NNPV +DP G W
Sbjct 2130 QYDEETGLYYLMARYYEPRNGVFLSLDPDPGSDGDSLDQNGYAYGNNNPVMNVDPDGHW 2188
Score = 71.2 bits (173), Expect = 1e-15
Identities = 88/375 (23%), Positives = 166/375 (44%), Gaps = 46/375 (12%)
Query 10 SSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINT 69
S+ Y++ G+ +T KG +T + +D +L + +N + + + YD +
Sbjct 1631 STSTDYDETGKKTAETDA-KGE--KTTYTYDQADQLTNMTLSNGT-SILHSYDKEGNEVS 1686
Query 70 VKVRIQGADK------DVVKSI--TYEPYGGIKSWTY--GNDLTRTTS---------FDK 110
+R GAD+ DV+ + T +P G + + Y ++LT+T S +D
Sbjct 1687 KTIRA-GADQTYKYEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDG 1745
Query 111 DYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESW 170
R+ + +K + +Y+ N ++V N E N + T+D +LT+ T ++W
Sbjct 1746 TDRVKSKSYNGTEKYNFTYDKNGNETSVVNK-EQNTTKKRTFDNKNRLTELTDRGGSQTW 1804
Query 171 TFDKNSNR----STRVGNTNLTTNYQTN-IGNRLASTTITEAKSFTYDVLGNL-IKKTGH 224
T+ +S++ S G+ T + N + + T + SF YD GN+ TG+
Sbjct 1805 TYPSDSDKLKTFSWSHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFITGN 1864
Query 225 GGTVDYSYDGFNRLKTVKAGSN------STNYDYDVFNLRTR-KTGGAGNVNYIYSPDGR 277
GG +SYD N + ++ G + +Y+YD RT + +G V Y Y +
Sbjct 1865 GGGTSFSYDERNLVSSLHIGDKNGGSILTESYEYDANGNRTTINSSASGKVQYEYGKLNQ 1924
Query 278 LLGESNTSDTNISTAYVWLYG-QVIGVVRNNTLNFVHNDHLGRPEVLTNLSKTVVWKSQN 336
L+ E++ T I Y + + V++ + V+ ++ L+K ++
Sbjct 1925 LVKETHEDGTVIEYTYDGFGNRKTVTTVKDGSSKTVNASF----NIMNQLTKV---NDES 1977
Query 337 NSYDSNVIQSSIGQF 351
SYD N ++S G+F
Sbjct 1978 ISYDKNGNRTSDGKF 1992
Score = 45.1 bits (105), Expect = 1e-07
Identities = 77/332 (23%), Positives = 129/332 (39%), Gaps = 35/332 (11%)
Query 135 ISNVDNSLEVNRSATYT--YDAIGQLTKSTSTQYIESWTFDKNSNRSTRVGNT---NLTT 189
I+ VD S+ +SAT T +D I + S T+ T+D N N T+ + + +T
Sbjct 1579 INKVDISILFQKSATGTVWFDDIRLIEGSLLTKS----TYDSNGNYVTKEEDELGFSTST 1634
Query 190 NYQTNIGNRLASTTIT-EAKSFTYDVLGNLIKKTGHGGT-VDYSYD--GFNRLKTVKAGS 245
+Y G + A T E ++TYD L T GT + +SYD G KT++AG+
Sbjct 1635 DYDET-GKKTAETDAKGEKTTYTYDQADQLTNMTLSNGTSILHSYDKEGNEVSKTIRAGA 1693
Query 246 NST-NYDYDVFNLRTRKTGGAGNVNYI-YSPDGRLLGESNTSDTNISTAYVWLYGQVIGV 303
+ T Y+YDV + T GNV Y + L + + +S +Y +V
Sbjct 1694 DQTYKYEYDVMGKLVKTTDPLGNVLASEYDANSNLTKTISPNGNEVSLSYDGT-DRVKSK 1752
Query 304 VRNNT--LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYD 361
N T NF ++ + V+ T ++ +N + G P
Sbjct 1753 SYNGTEKYNFTYDKNGNETSVVNKEQNTTKKRTFDNKNRLTELTDRGGSQTWTYPSDSDK 1812
Query 362 VESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTY---VGNNPVNFIDPYGLWSLSIE 418
+++ W + ++ I + ++Y++ N FI
Sbjct 1813 LKTFSWSHGDQKGTNQFTYNKLDQMIEMKDSTSSYSFDYDENGNVQTFIT---------- 1862
Query 419 GYYGVGGGASISYNNGTLEVTGKLGVGLGAGV 450
G GGG S SY+ L + +G G +
Sbjct 1863 ---GNGGGTSFSYDERNLVSSLHIGDKNGGSI 1891
Score = 42.0 bits (97), Expect = 1e-06
Identities = 64/298 (21%), Positives = 118/298 (40%), Gaps = 39/298 (13%)
Query 15 YNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRI 74
+NK G + +V+ G N T + +++ +L + A+ K+++ YD + ++
Sbjct 1010 FNKKGGKL--QKVVDGHNNATVYTYNDKNQLTAITDASGR-KLTFTYDENGHVTSIT--- 1063
Query 75 QGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNL 134
K+ K +TY +Y +DL + + D D +T + +A +L Y+ N+
Sbjct 1064 --GPKN--KKVTY---------SYESDLLKKVT-DTDGTVTSFDYDAEGRLVKQYSANST 1109
Query 135 ISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTN 194
+ V Y+ + + + Y+ S+ DK + T+ + Y
Sbjct 1110 -----EAKPVFTEYQYSGHRLEKAINAKKETYVYSYDADKKTLLMTQPNGRKVQYGYN-E 1163
Query 195 IGN-----------RLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKTVKA 243
GN ++ + T E + DV N + TG T Y YD + +VK
Sbjct 1164 AGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVG-TGKA-TESYQYDKDGNVTSVKD 1221
Query 244 GSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVI 301
+ Y+Y+ N T+ GNV I + E++ S + S A YG I
Sbjct 1222 AYGTETYEYNKNNDVTKMKDTEGNVTDIAYDGLDAVSETDQSGKSSSAAVYDKYGNQI 1279
Score = 37.4 bits (85), Expect = 3e-05
Identities = 62/270 (23%), Positives = 96/270 (36%), Gaps = 68/270 (25%)
Query 145 NRSATYTYDAIGQLTKSTSTQYIE-SWTFDKNSNRSTRVG--NTNLTTNYQTNIGNRLAS 201
N + YTY+ QLT T + ++T+D+N + ++ G N +T +Y++++ ++
Sbjct 1025 NNATVYTYNDKNQLTAITDASGRKLTFTYDENGHVTSITGPKNKKVTYSYESDLLKKVTD 1084
Query 202 TTITEAKSFTYDVLGNLIKKTGHGGT------VDYSYDGFNRLKTVKAGSNSTNYDYDVF 255
T T SF YD G L+K+ T +Y Y G K + A + Y YD
Sbjct 1085 TDGT-VTSFDYDAEGRLVKQYSANSTEAKPVFTEYQYSGHRLEKAINAKKETYVYSYDAD 1143
Query 256 NLRTRKTGGAGN-VNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHN 314
T G V Y Y+ G + QVI
Sbjct 1144 KKTLLMTQPNGRKVQYGYNEAGNPI-------------------QVI------------- 1171
Query 315 DHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYF 374
D ++ TN K + N+ +V + +G G + Y +
Sbjct 1172 DDAEGLKITTNT------KYEGNNVVEDVDPNDVGT---GKATESYQYDK---------- 1212
Query 375 DGTVGRYTQPDPIGLAGGVNTYTYVGNNPV 404
DG V A G TY Y NN V
Sbjct 1213 DGNVTSVKD------AYGTETYEYNKNNDV 1236
Score = 32.0 bits (71), Expect = 0.002
Identities = 71/269 (26%), Positives = 100/269 (37%), Gaps = 72/269 (27%)
Query 149 TYTYDAIGQLTKSTSTQYIESWTFDKNSNRSTRV--GNTNLTTNYQTNIGNRLASTTITE 206
T T D TK + Y F+K + +V G+ N T Y N N+L T IT+
Sbjct 992 TETADQFILKTKDQTNAY-----FNKKGGKLQKVVDGHNNATV-YTYNDKNQL--TAITD 1043
Query 207 AK----SFTYDVLGNLIKKTG-HGGTVDYSYDGFNRLKTVKAGSNSTNYDYDVFNLRTRK 261
A +FTYD G++ TG V YSY+ K T++DYD
Sbjct 1044 ASGRKLTFTYDENGHVTSITGPKNKKVTYSYESDLLKKVTDTDGTVTSFDYDA------- 1096
Query 262 TGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRPE 321
+GRL+ + + + T + + ++ H R E
Sbjct 1097 -------------EGRLVKQYSANSTEAKPVFT---------------EYQYSGH--RLE 1126
Query 322 VLTNLSK-TVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGR 380
N K T V+ SYD++ + Q N G QY E+G N + D
Sbjct 1127 KAINAKKETYVY-----SYDADKKTLLMTQPN-GRKVQYGYNEAG---NPIQVID----- 1172
Query 381 YTQPDPIGLAGGVNTYTYVGNNPVNFIDP 409
D GL NT Y GNN V +DP
Sbjct 1173 ----DAEGLKITTNT-KYEGNNVVEDVDP 1196
Score = 28.5 bits (62), Expect = 0.018
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 35/168 (21%)
Query 13 YGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFAND----SYKVSYGYDTLSRIN 68
YGYN+AG I +G TN ++ ++ + ND SY YD +
Sbjct 1159 YGYNEAGNPIQVIDDAEGLKITTNTKYEG-NNVVEDVDPNDVGTGKATESYQYDKDGNVT 1217
Query 69 TVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHS 128
+V KD + TYE + ND+T+ D + +T I +
Sbjct 1218 SV--------KDAYGTETYE-------YNKNNDVTKMK--DTEGNVTDI----------A 1250
Query 129 YNINNLISNVDNSLEVNRSATY-TYDAIGQLTK--STSTQYIESWTFD 173
Y+ + +S D S + + +A Y Y Q +K S ST ++ +F+
Sbjct 1251 YDGLDAVSETDQSGKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFE 1298
Score = 23.5 bits (49), Expect = 0.62
Identities = 31/152 (20%), Positives = 56/152 (37%), Gaps = 37/152 (24%)
Query 5 SDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTL 64
+D + Y Y +GQ++ T G Y + ++ +G +I+ + ++ Y YD
Sbjct 2052 ADNKVTKSYTYGDSGQLLSYTE--NGKKY--FYHYNAHGDVIAISDSSGKTLAKYQYDAW 2107
Query 65 SRINTVKVRIQGADKD-----------------VVKSITYEPYGGIKSWTYGNDLTRTTS 107
N K KD + + YEP G+ S
Sbjct 2108 G--NPTKTEASDEVKDNRYRYAGYQYDEETGLYYLMARYYEPRNGV-----------FLS 2154
Query 108 FDKDYRITGINTEAIQKLSHSYNINNLISNVD 139
D D G + +++ + ++Y NN + NVD
Sbjct 2155 LDPD---PGSDGDSLDQNGYAYGNNNPVMNVD 2183
Score = 21.6 bits (44), Expect = 2.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 0/44 (0%)
Query 188 TTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYS 231
T + NI L +FT+ V +L K G++D+S
Sbjct 200 TFTFNENIKEDLVLHQYDGYNTFTFQVKTDLQAKEQEDGSIDFS 243
Score = 21.2 bits (43), Expect = 3.2
Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 20/231 (9%)
Query 78 DKDVVKSITYEPYGGIKSWTYG--NDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLI 135
++++ + + Y G ++T+ DL D + + + + + ++ +
Sbjct 204 NENIKEDLVLHQYDGYNTFTFQVKTDLQAKEQEDGSIDFSDEKGKVVFSVPKPFMTDSKL 263
Query 136 SNVDNSLEVNRSATYTYDAI--GQLTKSTSTQYIESWTFDKNSNRSTRVG-NTNLTTNYQ 192
+ +E + +Y + G L T+ E+W D + +T+L+ +
Sbjct 264 DELSGEVERSDKVSYKLEKNEEGYLLHLTAD---ENWLKDPERVYPVSIDPSTSLSVSSD 320
Query 193 TNIGNRLASTTITEAKSFTYDV-LGNLIKKTGH----GGTVDYSYDGFNRLKTVK--AGS 245
T + + +T + A S +D L + + KTG+ GT +Y++ FN LK ++ A +
Sbjct 321 TFVMSAYPTTNYS-ASSQKWDANLKSYVLKTGYYDKTTGT-NYAFMKFNNLKPIQNMAVT 378
Query 246 NSTNYDYDVFNLRTRKTGG--AGNVNYIYSPDGRLLGESNTSDTNISTAYV 294
+T Y + K G VN Y +G++ + + NI A V
Sbjct 379 KATLKTYVAHSYYGTKATGLWLDTVNSNYD-NGKVTWNTKPASKNIGKAEV 428
Score = 20.8 bits (42), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (54%), Gaps = 0/26 (0%)
Query 242 KAGSNSTNYDYDVFNLRTRKTGGAGN 267
KA S +T Y VFN + +T GN
Sbjct 644 KAVSGATGYKVQVFNGKGFETLDLGN 669
Score = 20.4 bits (41), Expect = 5.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 0/76 (0%)
Query 109 DKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIE 168
DK ++G + S S ++ S+ ++E+ + TYT + + S Y
Sbjct 1320 DKSGVLSGSKALEVLSQSTSAGTDHGYSSATQTVELEPNTTYTLSGKIKTDLAKSRAYFN 1379
Query 169 SWTFDKNSNRSTRVGN 184
DK+ R + N
Sbjct 1380 IDLRDKDQKRIQWIHN 1395
Score = 19.6 bits (39), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (2%)
Query 7 GTSSSGYGYNKAGQMIVQTRVIK-GTNYQTNWAFDNYGRLISENFANDSYKVS 58
G SSS Y+K G I ++ + TN + +F+ + + DS K+S
Sbjct 1264 GKSSSAAVYDKYGNQIQSSKDLSASTNILKDGSFEAQKSGWNLTASKDSGKIS 1316
>P24211 Putative protein RhsE [Escherichia coli (strain K12)]
Length=682
Score = 82.8 bits (203), Expect = 2e-19
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 7/154 (5%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++F H DH G P L + W+ + + + + + + + + LPGQ +D ESGL
Sbjct 429 VHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHLHQPYRLPGQQHDEESGL 488
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWSL----SIEGYYG 422
+YN +R++D GRY PDPIGL GG N Y Y NP+ IDP GL ++ S Y
Sbjct 489 YYNRHRHYDPLQGRYITPDPIGLRGGWNMYQY-PLNPIQVIDPMGLDAIENMTSGGLIYA 547
Query 423 VGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNG 456
V G + N + G + A VG NG
Sbjct 548 VSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNG 581
Score = 23.1 bits (48), Expect = 0.76
Identities = 17/58 (29%), Positives = 23/58 (40%), Gaps = 0/58 (0%)
Query 267 NVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRPEVLT 324
+V+Y Y GRL GE T + + +W + N V D L E LT
Sbjct 18 SVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRVTPDSLPPVEWLT 75
Score = 22.7 bits (47), Expect = 1.00
Identities = 9/27 (33%), Positives = 17/27 (63%), Gaps = 0/27 (0%)
Query 216 GNLIKKTGHGGTVDYSYDGFNRLKTVK 242
G+L++ +G T +Y Y RL++V+
Sbjct 149 GDLVRISGPRQTREYGYSATGRLESVR 175
Score = 21.2 bits (43), Expect = 3.0
Identities = 60/292 (21%), Positives = 107/292 (37%), Gaps = 60/292 (21%)
Query 44 RLISENFANDSYKVS--YGYDTLSRINTVKVRIQGA----------------DKDVVKSI 85
RL + + ++ ++VS YGYD R+ + ++ ++ + +
Sbjct 4 RLTTLSHTSEGHRVSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRV 63
Query 86 TYEPYGGIKSWTYGN--------------DLTRTTSFDKDYRITG--INTEAIQKLSHSY 129
T + ++ TYG+ + TR + R G + A KL+ +Y
Sbjct 64 TPDSLPPVEWLTYGSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLTSTY 123
Query 130 N-INNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRS---TRVGNT 185
L S NSL +R Y ++ G L + + + + + T +
Sbjct 124 TPAGQLQSQHLNSLVYDRD--YGWNDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDL 181
Query 186 NLTTNYQTN-IGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRL--KT-- 240
++ Y T+ GNRL + + T N I + H Y +D + RL KT
Sbjct 182 DIRIPYATDPAGNRLPDPELHPDSTLTV-WPDNRIAEDAH---YVYRHDEYGRLTEKTDR 237
Query 241 VKAG------SNSTNYDYD-----VFNLRTRKTGGAGNVNYIYSPDGRLLGE 281
+ AG + +Y YD VF R + Y+Y P GR + +
Sbjct 238 IPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAK 289
>Q9I0F4 Toxin protein Tse5 [Pseudomonas aeruginosa (strain ATCC
15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C
/ PRS 101 / PAO1)]
Length=1317
Score = 83.2 bits (204), Expect = 2e-19
Identities = 89/362 (25%), Positives = 138/362 (38%), Gaps = 53/362 (15%)
Query 99 GNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQL 158
G D R +D ++ GI+ + + Y++ + + + ++TY YDA G
Sbjct 812 GFDWQRGYRYDGLGQLVGIDDNQYPSVRYEYDLGGRL--LASRRAGAAASTYRYDAAGNR 869
Query 159 TKSTSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTN-------IGNRLASTTITEAKSFT 211
+ E N R G + T GNR+ +
Sbjct 870 LEGVGEHAREDARQAFAENELYRSGFSRSETRASQAGEGPARWAGNRVERIA---GNRYR 926
Query 212 YDVLGNLIKKTGHGGT-VDYSYDGFNRL----KTVKAGSN-STNYDYDVFNLRTRKT--- 262
+D LGNL+++ G G + +YDG RL + G+ Y YD + R K
Sbjct 927 FDALGNLVERIGADGERLRLAYDGAQRLVHLTRDYADGTRLEARYRYDALSRRIAKVVLR 986
Query 263 -GGAGNVNY-------------------IYSPDGRL----LGESNTSDT----NISTAYV 294
G V + ++ P G + L ++ D + A+
Sbjct 987 DGVEQQVRFGWDGDRQCAEAFARELRTTVHEPGGFVPLLRLEQACEPDPPELLQLRQAFA 1046
Query 295 W----LYGQVIGVVRNNTLNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQ 350
L Q + + + F H DHLG P L++ + W+ + + + + G
Sbjct 1047 AEGQPLPAQCVPALGEARIAFFHTDHLGTPLQLSDERGQLRWQGVPDDWRAVAPERQPGA 1106
Query 351 FNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPY 410
I GQY+D ESGL+YN RY+ GRY DP+GL GG N Y Y N P DP
Sbjct 1107 QPIRFQGQYHDEESGLYYNRYRYYLPEAGRYASQDPLGLGGGPNPYAYALNAPTLAYDPT 1166
Query 411 GL 412
GL
Sbjct 1167 GL 1168
Score = 40.0 bits (92), Expect = 5e-06
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 41/253 (16%)
Query 13 YGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKV 72
Y Y+ G+++ + + T +D G+LI A+ S +SY YD L R +
Sbjct 508 YDYDNEGRLVASSDPL---GQLTRRRYDPLGQLIGLELADGS-ALSYEYDALGR----QT 559
Query 73 RIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTS---------FDKDYRITGINTEAIQ 123
RI A E + + SW +G+ L R + D+ R+ + E
Sbjct 560 RIADA----------EGHATLFSWGHGDLLARVSDAGGGELSYLHDEAGRLVALTNENGV 609
Query 124 KLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIE-SWTFDKNSN-RSTR 181
+ Y++ + + V+ + R Y Y+A +L E ++ +D++ S R
Sbjct 610 QAQFRYDLLDRL--VEETGFDGRRQRYRYNAADELIAREDADGRETTYAYDRDGRLASIR 667
Query 182 VGNTN----LTTNYQTNIGNRLASTTITEAK-SFTYDVLGNL-----IKKTGHGGTVDYS 231
V T L Y+ RLAS + + +TYD +GNL + G +V++S
Sbjct 668 VPATEHAPALVERYRWLADGRLASAGGADCEVRYTYDEVGNLRLESQVHADGWVYSVEHS 727
Query 232 YDGFNRLKTVKAG 244
+D +T + G
Sbjct 728 HDALGVRQTSRYG 740
Score = 34.3 bits (77), Expect = 3e-04
Identities = 39/143 (27%), Positives = 60/143 (42%), Gaps = 15/143 (10%)
Query 149 TYTYDAIGQLTKSTSTQ---YIESWTFDKNSNRSTRVGNTNLTTNYQTNIGNRLASTTIT 205
+Y YDA+G+ T+ + + SW R + G L+ Y + RL + T
Sbjct 549 SYEYDALGRQTRIADAEGHATLFSWGHGDLLARVSDAGGGELS--YLHDEAGRLVALTNE 606
Query 206 EA--KSFTYDVLGNLIKKTGHGGTVD-YSYDGFNRL-KTVKAGSNSTNYDYD----VFNL 257
F YD+L L+++TG G Y Y+ + L A T Y YD + ++
Sbjct 607 NGVQAQFRYDLLDRLVEETGFDGRRQRYRYNAADELIAREDADGRETTYAYDRDGRLASI 666
Query 258 RTRKTGGAGNV--NYIYSPDGRL 278
R T A + Y + DGRL
Sbjct 667 RVPATEHAPALVERYRWLADGRL 689
Score = 33.9 bits (76), Expect = 4e-04
Identities = 23/85 (27%), Positives = 39/85 (46%), Gaps = 3/85 (4%)
Query 212 YDVLGNLIK-KTGHGGTVDYSYDGFNR-LKTVKAGSNSTNYDYDVFNLRTRKT-GGAGNV 268
YD LG LI + G + Y YD R + A ++T + + +L R + G G +
Sbjct 531 YDPLGQLIGLELADGSALSYEYDALGRQTRIADAEGHATLFSWGHGDLLARVSDAGGGEL 590
Query 269 NYIYSPDGRLLGESNTSDTNISTAY 293
+Y++ GRL+ +N + Y
Sbjct 591 SYLHDEAGRLVALTNENGVQAQFRY 615
Score = 26.9 bits (58), Expect = 0.052
Identities = 31/118 (26%), Positives = 49/118 (42%), Gaps = 9/118 (8%)
Query 209 SFTYDVLGNLIKKTGHGGTVDYSYDG----FNRLKTVKAGSNSTNYDYDVFNLRTRKTGG 264
+F D GN G G+ Y+Y+ + V +++ F L T
Sbjct 442 TFERDERGNATTVRGPAGSTRYAYEDPRLPDRPTRIVDPRGGERRLEWNRFGLLAALTDC 501
Query 265 AGNV-NYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIG--VVRNNTLNFVHNDHLGR 319
+G V Y Y +GRL+ S+ Y L GQ+IG + + L++ + D LGR
Sbjct 502 SGQVWRYDYDNEGRLVASSDPLGQLTRRRYDPL-GQLIGLELADGSALSYEY-DALGR 557
Score = 21.9 bits (45), Expect = 1.8
Identities = 12/28 (43%), Positives = 16/28 (57%), Gaps = 1/28 (4%)
Query 445 GLGAGVGLDPNGKPS-KHALDCGSGAIA 471
GLG VG+D N PS ++ D G +A
Sbjct 823 GLGQLVGIDDNQYPSVRYEYDLGGRLLA 850
Score = 19.6 bits (39), Expect = 9.2
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 241 VKAGSNSTNYDYDVF 255
V+A + + +DYD+F
Sbjct 370 VRADGSRSEFDYDLF 384
>P32109 Putative uncharacterized protein YibJ [Escherichia coli
(strain K12)]
Length=233
Score = 78.6 bits (192), Expect = 3e-19
Identities = 43/111 (39%), Positives = 61/111 (55%), Gaps = 3/111 (3%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++ H DH G P L + W ++ + + + + + I LPGQ YD ESGL
Sbjct 48 IHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLSDENPHHLQQLIRLPGQQYDEESGL 107
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWSLSI 417
+YN +RY+D +GRY DPIGL GG N Y Y NPV +DP GL +++
Sbjct 108 YYNRHRYYDPLLGRYITQDPIGLKGGWNFYQY-PLNPVINVDPQGLVDINL 157
>P77779 Putative uncharacterized protein YbfO [Escherichia coli
(strain K12)]
Length=477
Score = 79.7 bits (195), Expect = 1e-18
Identities = 45/108 (42%), Positives = 60/108 (56%), Gaps = 3/108 (3%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++ H DH G P L + W ++ + + + + + + Q I LPGQ YD ESGL
Sbjct 221 IHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGL 280
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWS 414
+YN +RY+D GRY DPIGL GG N Y Y NPV +ID GL S
Sbjct 281 YYNRHRYYDPLQGRYITQDPIGLKGGWNFYQY-PLNPVQYIDSMGLAS 327
Score = 21.6 bits (44), Expect = 2.2
Identities = 10/23 (43%), Positives = 13/23 (57%), Gaps = 0/23 (0%)
Query 146 RSATYTYDAIGQLTKSTSTQYIE 168
R+ Y YD+ +L T TQY E
Sbjct 41 RTHRYHYDSQHRLVHYTRTQYAE 63
>P16917 Protein RhsB [Escherichia coli (strain K12)]
Length=1411
Score = 80.5 bits (197), Expect = 1e-18
Identities = 44/106 (42%), Positives = 60/106 (57%), Gaps = 3/106 (3%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++ H DH G P L + W ++ + + + + + + Q I LPGQ YD ESGL
Sbjct 1143 IHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGL 1202
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGL 412
+YN +RY+D GRY DPIGL GG N Y Y NP++ IDP GL
Sbjct 1203 YYNRHRYYDPLQGRYITQDPIGLKGGWNLYGY-QLNPISDIDPLGL 1247
Score = 53.9 bits (128), Expect = 3e-10
Identities = 76/324 (23%), Positives = 122/324 (38%), Gaps = 46/324 (14%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDT 63
T DG +S+ Y YN Q+ T + +D GRLI E A D Y YD
Sbjct 458 TPDGRASAFY-YNHHNQL---TSATGPDGLELRREYDELGRLIQET-APDGDITRYRYDN 512
Query 64 LSRINTVKVRIQGADKDVV---KSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTE 120
+ A +D K++T+ YG + S+T + D+ ++T ++ E
Sbjct 513 PHS------DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHRE 566
Query 121 AIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRST 180
+Y+ + V ++ Y Y+ G LT + + T ++
Sbjct 567 EGLSQYRAYDSRGQLIAVKDTQ--GHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAV 624
Query 181 RVGNTNLTTNYQTNIGNRLASTTITEAK--SFTYDVLGNLIKKTGHGG------------ 226
R LT + + + R+ T +F YDVL LI++TG G
Sbjct 625 RTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGK 684
Query 227 ---------TVDYSYDGFNRL--KTVKAGSNSTNYDYD----VFNLRTRKTGGAGNVNYI 271
+ YD +RL +TVK G + + YD + ++ G V+Y
Sbjct 685 LIRSEDEGLVTHWHYDEADRLTHRTVK-GETAERWQYDERGWLTDISHISEGHRVAVHYR 743
Query 272 YSPDGRLLGESNTSDTNISTAYVW 295
Y GRL GE T + A +W
Sbjct 744 YDEKGRLTGERQTVHHPQTEALLW 767
Score = 28.5 bits (62), Expect = 0.018
Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 53/309 (17%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFA---NDSYKVSYG 60
T G ++ + Y++ G + + + +G ++ +D GRL E + + +
Sbjct 709 TVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQ 768
Query 61 YDTLSRINTVKVRIQGADKDVVKSITYEPYG-----GIKSWT-----YGND-LTRTT--S 107
++T N + + D + ++ + YG G+K Y D L R T S
Sbjct 769 HETRHAYNAQGLANR-CIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRS 827
Query 108 FDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYI 167
F + Y +T T A Q S ++N+L+S+ D YT++ G+L + +S +
Sbjct 828 FGR-YELTTAYTPAGQL--QSQHLNSLLSDRD----------YTWNDNGELIRISSPRQT 874
Query 168 ESWTFDKNSNRS---TRVGNTNLTTNYQTN-IGNRLASTTITEAKSFTYDVLGNLIKKTG 223
S+++ + T N ++ Y T+ GNRL + + + N I +
Sbjct 875 RSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSM-WPDNRIARDA 933
Query 224 HGGTVDYSYDGFNRLK---------TVKAGSNSTN-YDYD-----VFNLRTRKTGGAGNV 268
H Y YD RL ++ T+ Y YD V RT+
Sbjct 934 H---YLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVES 990
Query 269 NYIYSPDGR 277
Y+Y P GR
Sbjct 991 RYLYDPLGR 999
Score = 20.0 bits (40), Expect = 7.0
Identities = 8/30 (27%), Positives = 14/30 (47%), Gaps = 0/30 (0%)
Query 264 GAGNVNYIYSPDGRLLGESNTSDTNISTAY 293
G + Y Y DGR+ + N + + + Y
Sbjct 353 GRPEIRYRYDSDGRVTEQLNPAGLSYTYQY 382
>P16916 Protein RhsA [Escherichia coli (strain K12)]
Length=1377
Score = 79.3 bits (194), Expect = 3e-18
Identities = 45/106 (42%), Positives = 59/106 (56%), Gaps = 3/106 (3%)
Query 309 LNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFN--IGLPGQYYDVESGL 366
++ H DH G P L + T W ++ + + + + + + Q I LPGQ YD ESGL
Sbjct 1143 IHLYHCDHRGLPLALISKEGTTEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGL 1202
Query 367 WYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGL 412
+YN +RY+D GRY DPIGL GG N Y Y NPV DP GL
Sbjct 1203 YYNRHRYYDPLQGRYITQDPIGLKGGWNFYQY-PLNPVTNTDPLGL 1247
Score = 53.9 bits (128), Expect = 3e-10
Identities = 76/324 (23%), Positives = 122/324 (38%), Gaps = 46/324 (14%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDT 63
T DG +S+ Y YN Q+ T + +D GRLI E A D Y YD
Sbjct 458 TPDGRASAFY-YNHHNQL---TSATGPDGLELRREYDELGRLIQET-APDGDITRYRYDN 512
Query 64 LSRINTVKVRIQGADKDVV---KSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTE 120
+ A +D K++T+ YG + S+T + D+ ++T ++ E
Sbjct 513 PHS------DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHRE 566
Query 121 AIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRST 180
+Y+ + V ++ Y Y+ G LT + + T ++
Sbjct 567 EGLSQYRAYDSRGQLIAVKDTQ--GHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAV 624
Query 181 RVGNTNLTTNYQTNIGNRLASTTITEAK--SFTYDVLGNLIKKTGHGG------------ 226
R LT + + + R+ T +F YDVL LI++TG G
Sbjct 625 RTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGK 684
Query 227 ---------TVDYSYDGFNRL--KTVKAGSNSTNYDYD----VFNLRTRKTGGAGNVNYI 271
+ YD +RL +TVK G + + YD + ++ G V+Y
Sbjct 685 LIRSEDEGLVTHWHYDEADRLTHRTVK-GETAERWQYDERGWLTDISHISEGHRVAVHYR 743
Query 272 YSPDGRLLGESNTSDTNISTAYVW 295
Y GRL GE T + A +W
Sbjct 744 YDEKGRLTGERQTVHHPQTEALLW 767
Score = 28.5 bits (62), Expect = 0.018
Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 53/309 (17%)
Query 4 TSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFA---NDSYKVSYG 60
T G ++ + Y++ G + + + +G ++ +D GRL E + + +
Sbjct 709 TVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQ 768
Query 61 YDTLSRINTVKVRIQGADKDVVKSITYEPYG-----GIKSWT-----YGND-LTRTT--S 107
++T N + + D + ++ + YG G+K Y D L R T S
Sbjct 769 HETRHAYNAQGLANR-CIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRS 827
Query 108 FDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYI 167
F + Y +T T A Q S ++N+L+S+ D YT++ G+L + +S +
Sbjct 828 FGR-YELTTAYTPAGQL--QSQHLNSLLSDRD----------YTWNDNGELIRISSPRQT 874
Query 168 ESWTFDKNSNRS---TRVGNTNLTTNYQTN-IGNRLASTTITEAKSFTYDVLGNLIKKTG 223
S+++ + T N ++ Y T+ GNRL + + + N I +
Sbjct 875 RSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSM-WPDNRIARDA 933
Query 224 HGGTVDYSYDGFNRLK---------TVKAGSNSTN-YDYD-----VFNLRTRKTGGAGNV 268
H Y YD RL ++ T+ Y YD V RT+
Sbjct 934 H---YLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVES 990
Query 269 NYIYSPDGR 277
Y+Y P GR
Sbjct 991 RYLYDPLGR 999
Score = 20.0 bits (40), Expect = 7.0
Identities = 8/30 (27%), Positives = 14/30 (47%), Gaps = 0/30 (0%)
Query 264 GAGNVNYIYSPDGRLLGESNTSDTNISTAY 293
G + Y Y DGR+ + N + + + Y
Sbjct 353 GRPEIRYRYDSDGRVTEQLNPAGLSYTYQY 382
Lambda K H a alpha
0.314 0.134 0.402 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7255872
Database: 86815848a8dec4969fed1856ef17bb7b.SwissProt.fasta
Posted date: Jun 1, 2024 6:25 PM
Number of letters in database: 15,337
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
