BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5dea5b874c1f7e8982e0ae490fedc236.SwissProt.fasta
17 sequences; 10,601 total letters
Query= ACIAD1101
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
P0AD66 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli O6... 491 1e-169
P0AD67 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli O1... 491 1e-169
P0AD65 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli (s... 491 1e-169
P44469 Peptidoglycan D,D-transpeptidase MrdA [Haemophilus influen... 487 1e-167
P0CL14 Peptidoglycan D,D-transpeptidase MrdA [Salmonella typhimur... 447 1e-152
E1WGF1 Peptidoglycan D,D-transpeptidase MrdA [Salmonella typhimur... 447 1e-152
Q03524 Stage V sporulation protein D [Bacillus subtilis (strain 1... 189 1e-54
P42971 Penicillin-binding protein 3 [Bacillus subtilis (strain 168)] 187 9e-54
G3XD46 Peptidoglycan D,D-transpeptidase FtsI [Pseudomonas aerugin... 175 3e-50
P0AD69 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli O1... 169 5e-48
P0AD68 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli (s... 169 5e-48
P0A0U8 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 167 3e-47
P0A0U9 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 167 3e-47
P08149 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 166 5e-47
P45059 Peptidoglycan D,D-transpeptidase FtsI [Haemophilus influen... 154 1e-42
P07944 Beta-lactam-inducible penicillin-binding protein [Staphylo... 154 2e-42
Q07868 Penicillin-binding protein 2B [Bacillus subtilis (strain 1... 153 4e-42
>P0AD66 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=633
Score = 491 bits (1265), Expect = 1e-169
Identities = 261/633 (41%), Positives = 378/633 (60%), Gaps = 17/633 (3%)
Query 1 MKQHFPLKDNQQEKRLYRGRIFFA-IGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRI 59
MK +D E L+ R A +G++ +L+ + Y LQIV + ++ T S++NRI
Sbjct 1 MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYN-LQIVRFTDYQTRSNENRI 59
Query 60 RLQPLAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRF 119
+L P+AP+RG IYDRNGI LA N ++ M V+++ T+ L ++ LT +DI F
Sbjct 60 KLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAF 119
Query 120 KSRIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYV 179
+ + + + +K NLTE +A+F+ +Y FPGV+++ RYYP+G HVIGYV
Sbjct 120 RKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYV 179
Query 180 GRINEKELKSLNKD----TYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHL 235
+IN+K+++ LN D YA T+ IGK+G+E+ YED+LHG GYE VE + V+R L
Sbjct 180 SKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQL 239
Query 236 GRKEPIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVT 295
P G+D+YL+LD LQ L R AVV DPRTG +LALVS+PS++PNLFV
Sbjct 240 KEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVD 299
Query 296 GISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFH 355
GIS DYSAL ++ + PL NRA QGVYPP ST+KP + + G + TT++DPG++
Sbjct 300 GISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQ 359
Query 356 LPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGV 415
LPG ++RDWKK GHG +N+ +S+ ES DT+FY ++Y +GIDR++EWM +FG+G TG+
Sbjct 360 LPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGI 419
Query 416 DLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHV 475
DL E G P EWK + K W +G+TI V IGQG +TATP+Q++ A I+ N G
Sbjct 420 DLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVK 479
Query 476 VPHVL--RASHGAKPHTV--HNAPDGKINFNGTEQDWINMRDAMVDVVQSGTG---RGIR 528
VPH+L A G + V H P G I+ W +D M V G +
Sbjct 480 VPHLLMSTAEDGKQVPWVQPHEPPVGDIH----SGYWELAKDGMYGVANRPNGTAHKYFA 535
Query 529 TPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGR 588
+ Y+IA K+GTAQV + + YN ++ER DH L FAP +NP++A+A++ ENG
Sbjct 536 SAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGG 595
Query 589 HGGSAAQIARPIFDYWIVNRKKNPIRPANHQIS 621
G + + R I D+ ++ + N ++
Sbjct 596 AGPAVGTLMRQILDHIMLGDNNTDLPAENPAVA 628
>P0AD67 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli
O157:H7]
Length=633
Score = 491 bits (1265), Expect = 1e-169
Identities = 261/633 (41%), Positives = 378/633 (60%), Gaps = 17/633 (3%)
Query 1 MKQHFPLKDNQQEKRLYRGRIFFA-IGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRI 59
MK +D E L+ R A +G++ +L+ + Y LQIV + ++ T S++NRI
Sbjct 1 MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYN-LQIVRFTDYQTRSNENRI 59
Query 60 RLQPLAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRF 119
+L P+AP+RG IYDRNGI LA N ++ M V+++ T+ L ++ LT +DI F
Sbjct 60 KLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAF 119
Query 120 KSRIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYV 179
+ + + + +K NLTE +A+F+ +Y FPGV+++ RYYP+G HVIGYV
Sbjct 120 RKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYV 179
Query 180 GRINEKELKSLNKD----TYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHL 235
+IN+K+++ LN D YA T+ IGK+G+E+ YED+LHG GYE VE + V+R L
Sbjct 180 SKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQL 239
Query 236 GRKEPIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVT 295
P G+D+YL+LD LQ L R AVV DPRTG +LALVS+PS++PNLFV
Sbjct 240 KEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVD 299
Query 296 GISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFH 355
GIS DYSAL ++ + PL NRA QGVYPP ST+KP + + G + TT++DPG++
Sbjct 300 GISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQ 359
Query 356 LPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGV 415
LPG ++RDWKK GHG +N+ +S+ ES DT+FY ++Y +GIDR++EWM +FG+G TG+
Sbjct 360 LPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGI 419
Query 416 DLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHV 475
DL E G P EWK + K W +G+TI V IGQG +TATP+Q++ A I+ N G
Sbjct 420 DLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVK 479
Query 476 VPHVL--RASHGAKPHTV--HNAPDGKINFNGTEQDWINMRDAMVDVVQSGTG---RGIR 528
VPH+L A G + V H P G I+ W +D M V G +
Sbjct 480 VPHLLMSTAEDGKQVPWVQPHEPPVGDIH----SGYWELAKDGMYGVANRPNGTAHKYFA 535
Query 529 TPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGR 588
+ Y+IA K+GTAQV + + YN ++ER DH L FAP +NP++A+A++ ENG
Sbjct 536 SAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGG 595
Query 589 HGGSAAQIARPIFDYWIVNRKKNPIRPANHQIS 621
G + + R I D+ ++ + N ++
Sbjct 596 AGPAVGTLMRQILDHIMLGDNNTDLPAENPAVA 628
>P0AD65 Peptidoglycan D,D-transpeptidase MrdA [Escherichia coli
(strain K12)]
Length=633
Score = 491 bits (1265), Expect = 1e-169
Identities = 261/633 (41%), Positives = 378/633 (60%), Gaps = 17/633 (3%)
Query 1 MKQHFPLKDNQQEKRLYRGRIFFA-IGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRI 59
MK +D E L+ R A +G++ +L+ + Y LQIV + ++ T S++NRI
Sbjct 1 MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYN-LQIVRFTDYQTRSNENRI 59
Query 60 RLQPLAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRF 119
+L P+AP+RG IYDRNGI LA N ++ M V+++ T+ L ++ LT +DI F
Sbjct 60 KLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAF 119
Query 120 KSRIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYV 179
+ + + + +K NLTE +A+F+ +Y FPGV+++ RYYP+G HVIGYV
Sbjct 120 RKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYV 179
Query 180 GRINEKELKSLNKD----TYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHL 235
+IN+K+++ LN D YA T+ IGK+G+E+ YED+LHG GYE VE + V+R L
Sbjct 180 SKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQL 239
Query 236 GRKEPIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVT 295
P G+D+YL+LD LQ L R AVV DPRTG +LALVS+PS++PNLFV
Sbjct 240 KEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVD 299
Query 296 GISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFH 355
GIS DYSAL ++ + PL NRA QGVYPP ST+KP + + G + TT++DPG++
Sbjct 300 GISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQ 359
Query 356 LPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGV 415
LPG ++RDWKK GHG +N+ +S+ ES DT+FY ++Y +GIDR++EWM +FG+G TG+
Sbjct 360 LPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGI 419
Query 416 DLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHV 475
DL E G P EWK + K W +G+TI V IGQG +TATP+Q++ A I+ N G
Sbjct 420 DLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVK 479
Query 476 VPHVL--RASHGAKPHTV--HNAPDGKINFNGTEQDWINMRDAMVDVVQSGTG---RGIR 528
VPH+L A G + V H P G I+ W +D M V G +
Sbjct 480 VPHLLMSTAEDGKQVPWVQPHEPPVGDIH----SGYWELAKDGMYGVANRPNGTAHKYFA 535
Query 529 TPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGR 588
+ Y+IA K+GTAQV + + YN ++ER DH L FAP +NP++A+A++ ENG
Sbjct 536 SAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGG 595
Query 589 HGGSAAQIARPIFDYWIVNRKKNPIRPANHQIS 621
G + + R I D+ ++ + N ++
Sbjct 596 AGPAVGTLMRQILDHIMLGDNNTDLPAENPAVA 628
>P44469 Peptidoglycan D,D-transpeptidase MrdA [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=651
Score = 487 bits (1253), Expect = 1e-167
Identities = 252/616 (41%), Positives = 374/616 (61%), Gaps = 14/616 (2%)
Query 4 HFPLKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQP 63
H P +D + E+ L+ R A + +L + LQIV++D + T S+ NRI+L P
Sbjct 12 HEPFRDKKAERNLFARRTLVAFLGILLLTGVLFTNIYQLQIVNFDTYQTRSNGNRIKLLP 71
Query 64 LAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRI 123
L P RG IYDR G LLA+N F + E++D T+ L I+ LT DI+ FK
Sbjct 72 LPPTRGLIYDRYGKLLAENLTFFGLYIVPEKTENLDRTLDELRYIVGLTDNDIENFKKER 131
Query 124 KTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRIN 183
+ + + +K NLTE I++F+ Y +P +++ R+Y +G+ AH++GYVG++N
Sbjct 132 RRGTRYTPILLKPNLTEEQISRFAVNGYQYPSLEVRPYFKRHYLYGETMAHILGYVGKMN 191
Query 184 EKELKSLNKD----TYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRKE 239
+K+++ L ++ YAGTN IGK+G+E+ YED+L GT G+E VE + V+R L +
Sbjct 192 DKDVERLKREDKFANYAGTNDIGKLGIERYYEDILQGTTGFEEVEINNRGKVIRTLRSRP 251
Query 240 PIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVTGISH 299
+ G ++L++D LQ E L +GAVV +DP+ +LA+VS+PS++ NLFV GIS
Sbjct 252 AVAGKSIHLTIDLALQRYITELLSGLKGAVVVLDPKDSSVLAMVSTPSYDNNLFVDGISS 311
Query 300 VDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFHLPGD 359
DY L ++L +PLY+RA QG YPP ST+KP + + TTI+DPGY+ LP
Sbjct 312 EDYKRLLNDLARPLYSRATQGAYPPASTVKPFIAVAAQTENVITPNTTIFDPGYWVLPNS 371
Query 360 SHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGVDLPS 419
+ +FRDWKKTGHG +L+K+I ES DTYFY ++Y +GIDR++ WM+ FGFG TG+++
Sbjct 372 TKRFRDWKKTGHGDTDLNKAITESSDTYFYQVAYNMGIDRLSNWMKDFGFGMPTGIEIQE 431
Query 420 ESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHVVPHV 479
E+ P EWK + K W++G+TISV IGQG +TATPLQ+A AT+I+ N+G PH+
Sbjct 432 ETAANIPTREWKQKRYKRPWVQGDTISVGIGQGYWTATPLQVAKATTILVNNGKVNTPHL 491
Query 480 LRASHGAKPHTVHNA---PDGKINFNGTEQDWINMRDAMVDVVQSGTGRGIRT---PLYQ 533
++A GA + PD IN W + M +VV + G G + Y+
Sbjct 492 MKAIEGAVLEPYEDPLLYPD--IN-TPKVAAWEAAKRGMYNVVNAANGTGRKAFADANYR 548
Query 534 IAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGRHGGS- 592
+AGK+GTAQV S+ + +KYN + L + DH F +AP DNP++ + V+ EN G S
Sbjct 549 VAGKSGTAQVFSLKENEKYNTAGLKKELHDHAWFTAYAPYDNPKLVVTVILENAGGGSSN 608
Query 593 AAQIARPIFDYWIVNR 608
AA +AR + DY++ R
Sbjct 609 AAPLARKVMDYYLNQR 624
>P0CL14 Peptidoglycan D,D-transpeptidase MrdA [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=623
Score = 447 bits (1150), Expect = 1e-152
Identities = 240/606 (40%), Positives = 359/606 (59%), Gaps = 11/606 (2%)
Query 8 KDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLAPA 67
KD E++L+ R+ A G+V C +L+ LQI + ++T S++N I++ P+AP
Sbjct 4 KDFDAEEKLFLRRVIVAFGVVVVCFGILIFNLYNLQIRQHHYYTTRSNENDIKMLPVAPT 63
Query 68 RGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKTAR 127
RG IYDRNGI L N + ++ + D+D + +LTPI+ L+ +DI F+ +K++
Sbjct 64 RGIIYDRNGIPLVRNVTWYDIAVTPYKIADMDALLKQLTPIVDLSPDDISDFRRALKSSS 123
Query 128 KTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINEKEL 187
+ V +K LT+ +IA+F+ +++F GV I + R YP+G AHV+GYV +IN+ +L
Sbjct 124 RYRPVVLKNALTDVEIARFAVNQFHFNGVTINSYQDRQYPYGAELAHVLGYVSKINDNDL 183
Query 188 KSLNK----DTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRKEPIRG 243
K+L+K + YA + IGK G+E+ YE+ LHG GY+ VE D H ++R L PI G
Sbjct 184 KALDKKGLAENYAADHNIGKQGIERYYENDLHGKTGYQEVEVDNHGRIVRLLKDVPPIAG 243
Query 244 NDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVTGISHVDYS 303
+++L+LD LQ L +R AV+ DP G +LA+VS PS++PN FV GIS+ DY
Sbjct 244 KNIHLTLDLHLQEYIESLLAGQRAAVLVEDPHDGSVLAMVSMPSYDPNPFVKGISYQDYG 303
Query 304 ALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFHLPGDSHKF 363
L + + PL NR QG+YPP ST+KP + + G + TT + + LPG +
Sbjct 304 KLLHDKNLPLINRVTQGLYPPASTVKPYMAMSALLCGIITPQTTFFGAPTWTLPGTQRHY 363
Query 364 RDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGVDLPSESEG 423
RDWKKTGHG +++ K+I ES DT+FY ++Y +GIDR++ + QFG+G+ TG+DL E +G
Sbjct 364 RDWKKTGHGMLDVTKAIEESADTFFYQVAYMMGIDRIDTMLSQFGYGKPTGIDLNEEYDG 423
Query 424 LYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHVVPHVLRAS 483
L P+ WK R K W +G+TISV IGQG + ATP+Q+ A + N+G + PH+L
Sbjct 424 LLPSRAWKQRVHKKAWYQGDTISVGIGQGYWIATPIQMVKAMVALINNGKVIAPHLLLNE 483
Query 484 HGAKPHTVHNAPDGKIN--FNGTEQDWINMRDAMVDVVQSGTGRGIR---TPLYQIAGKT 538
K V P G + W +R AM + + G G + T Y IA K+
Sbjct 484 ESGKT-VVPYRPSGTPAQIADPASPYWGLVRQAMYGMANAPNGTGYKFFHTAPYGIAAKS 542
Query 539 GTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGRHGG-SAAQIA 597
GT+QV S+ + + YN ++ R DH + FAP NP++AIA++ ENG G +AA I
Sbjct 543 GTSQVFSLKENQTYNAKMIPIRLRDHVFYTAFAPYKNPKVAIALILENGGSDGVTAAPIM 602
Query 598 RPIFDY 603
R I D+
Sbjct 603 RKILDH 608
Score = 21.9 bits (45), Expect = 1.5
Identities = 9/17 (53%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 588 RHGGSAAQIARPIFDYW 604
R G+ AQIA P YW
Sbjct 493 RPSGTPAQIADPASPYW 509
>E1WGF1 Peptidoglycan D,D-transpeptidase MrdA [Salmonella typhimurium
(strain SL1344)]
Length=623
Score = 447 bits (1150), Expect = 1e-152
Identities = 240/606 (40%), Positives = 359/606 (59%), Gaps = 11/606 (2%)
Query 8 KDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLAPA 67
KD E++L+ R+ A G+V C +L+ LQI + ++T S++N I++ P+AP
Sbjct 4 KDFDAEEKLFLRRVIVAFGVVVVCFGILIFNLYNLQIRQHHYYTTRSNENDIKMLPVAPT 63
Query 68 RGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKTAR 127
RG IYDRNGI L N + ++ + D+D + +LTPI+ L+ +DI F+ +K++
Sbjct 64 RGIIYDRNGIPLVRNVTWYDIAVTPYKIADMDALLKQLTPIVDLSPDDISDFRRALKSSS 123
Query 128 KTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINEKEL 187
+ V +K LT+ +IA+F+ +++F GV I + R YP+G AHV+GYV +IN+ +L
Sbjct 124 RYRPVVLKNALTDVEIARFAVNQFHFNGVTINSYQDRQYPYGAELAHVLGYVSKINDNDL 183
Query 188 KSLNK----DTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRKEPIRG 243
K+L+K + YA + IGK G+E+ YE+ LHG GY+ VE D H ++R L PI G
Sbjct 184 KALDKKGLAENYAADHNIGKQGIERYYENDLHGKTGYQEVEVDNHGRIVRLLKDVPPIAG 243
Query 244 NDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVTGISHVDYS 303
+++L+LD LQ L +R AV+ DP G +LA+VS PS++PN FV GIS+ DY
Sbjct 244 KNIHLTLDLHLQEYIESLLAGQRAAVLVEDPHDGSVLAMVSMPSYDPNPFVKGISYQDYG 303
Query 304 ALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFHLPGDSHKF 363
L + + PL NR QG+YPP ST+KP + + G + TT + + LPG +
Sbjct 304 KLLHDKNLPLINRVTQGLYPPASTVKPYMAMSALLCGIITPQTTFFGAPTWTLPGTQRHY 363
Query 364 RDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGVDLPSESEG 423
RDWKKTGHG +++ K+I ES DT+FY ++Y +GIDR++ + QFG+G+ TG+DL E +G
Sbjct 364 RDWKKTGHGMLDVTKAIEESADTFFYQVAYMMGIDRIDTMLSQFGYGKPTGIDLNEEYDG 423
Query 424 LYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHVVPHVLRAS 483
L P+ WK R K W +G+TISV IGQG + ATP+Q+ A + N+G + PH+L
Sbjct 424 LLPSRAWKQRVHKKAWYQGDTISVGIGQGYWIATPIQMVKAMVALINNGKVIAPHLLLNE 483
Query 484 HGAKPHTVHNAPDGKIN--FNGTEQDWINMRDAMVDVVQSGTGRGIR---TPLYQIAGKT 538
K V P G + W +R AM + + G G + T Y IA K+
Sbjct 484 ESGKT-VVPYRPSGTPAQIADPASPYWGLVRQAMYGMANAPNGTGYKFFHTAPYGIAAKS 542
Query 539 GTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWENGRHGG-SAAQIA 597
GT+QV S+ + + YN ++ R DH + FAP NP++AIA++ ENG G +AA I
Sbjct 543 GTSQVFSLKENQTYNAKMIPIRLRDHVFYTAFAPYKNPKVAIALILENGGSDGVTAAPIM 602
Query 598 RPIFDY 603
R I D+
Sbjct 603 RKILDH 608
Score = 21.9 bits (45), Expect = 1.5
Identities = 9/17 (53%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 588 RHGGSAAQIARPIFDYW 604
R G+ AQIA P YW
Sbjct 493 RPSGTPAQIADPASPYW 509
>Q03524 Stage V sporulation protein D [Bacillus subtilis (strain
168)]
Length=646
Score = 189 bits (479), Expect = 1e-54
Identities = 176/642 (27%), Positives = 281/642 (44%), Gaps = 85/642 (13%)
Query 18 RGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLAPARGYIYDRNGI 77
R R+ F + L++ +R Y+Q V ++ ++ + + R P P RG I DRNG+
Sbjct 9 RKRLLFVLLFGVIVFLIIDTRLGYVQFVMGEKLTSLAKDSWSRNLPFEPERGEILDRNGV 68
Query 78 LLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKTARKTERVSIKLN 137
LA N T + V++ T +L +L++++E + + ++ + K K++
Sbjct 69 KLATNKSAPTVFVVPRQVQNPMKTSKQLAAVLNMSEEKVYKHVTKKASIEKITPEGRKIS 128
Query 138 LTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINEKELKSLNKDTYAG 197
+ K +LK GV + R+YP G +HV+G+ G N+
Sbjct 129 NEKAKEIKALDLK----GVYVAEDSIRHYPFGSFLSHVLGFAGIDNQ------------- 171
Query 198 TNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRK--EPIRGNDLYLSLDYGLQ 255
G +G+E Y+D L G G DA + P G D+ L++D +Q
Sbjct 172 ----GLLGLEAYYDDDLKGEKGSVKFYTDAKGKKMPDEADDYTPPKDGLDMKLTVDSKVQ 227
Query 256 MVAAEQLKDKRGA-------VVAIDPRTGEILALVSSPSFNPNLFVTGISHVDYSALRDN 308
+ +L + VA++P+ GEIL + S P F+P DY ++
Sbjct 228 TIMERELDNAEAKYHPDGMIAVAMNPKNGEILGMSSRPDFDP---------ADYQSV--- 275
Query 309 LDQPLYNRALQ--GVYPPGSTIKPMEGLGGIHYGTVDWGTT-IYDPGYFHLPGDSHKFRD 365
D +YNR L Y PGST K + + V+ YD G H D + R
Sbjct 276 -DPSVYNRNLPVWSTYEPGSTFKIITLAAALEEQKVNLKRDQFYDKG--HAEVDGARLRC 332
Query 366 WKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTGVDLPSESEG-L 424
WK+ GHG + + SC+ F L +LG +++ ++++ FGFGQKTG+DL E G L
Sbjct 333 WKRGGHGLQTYLEVVQNSCNPGFVELGERLGKEKLFKYIKDFGFGQKTGIDLQGEGTGIL 392
Query 425 YPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHVVPHVLR--A 482
+P + E + + GQG + TP+Q A S N G P++ +
Sbjct 393 FP---------LERVGPVEQATTAFGQGV-SVTPIQQVAAVSAAVNGGTLYTPYIAKEWI 442
Query 483 SHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQSGTGRGIRTPLYQIAGKTGTAQ 542
K +P K +E+ +R A+ VV GTGR Y++ GKTGTAQ
Sbjct 443 DPVTKKTVKKQSPIAKKQVI-SEETSKQIRYALESVVAEGTGRNAFVEGYRVGGKTGTAQ 501
Query 543 VKSIAQGKKY-NESILSERQLDHGLFVGFAPADNPEIAIAVVWENGR----HGGSAAQIA 597
+ GK N I+S F+GFAPAD+P + + V +N + GG+ +A
Sbjct 502 --KVKDGKYLENNHIVS--------FIGFAPADDPSLVVYVAVDNPKGTIQFGGT---VA 548
Query 598 RPIFDYWIVNRKKNP---IRPANHQISGGLMTAGIKPGELPS 636
PI + R P ++P +QI K E+P+
Sbjct 549 APIVGN--IMRDSLPELGVKPRKNQIEKKYQWNDTKTIEVPN 588
>P42971 Penicillin-binding protein 3 [Bacillus subtilis (strain
168)]
Length=668
Score = 187 bits (474), Expect = 9e-54
Identities = 162/566 (29%), Positives = 256/566 (45%), Gaps = 75/566 (13%)
Query 50 FSTASDKNRIRLQPLAPARGYIYDRNGILLADNYPVFTATMSRADVEDI-DGTIARLTPI 108
F +D +++ + P RG IYD+NG LA N V + ++ D + I L
Sbjct 141 FKQLADDKTVQIMSIEPKRGQIYDKNGKGLAVNTDVPEIGIVPGELGDKKEKVIKELAKK 200
Query 109 LSLTQEDIDRFKSRIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPH 168
L LT++DI K ++ + + L + D K + GV +RYYP+
Sbjct 201 LDLTEDDI---KKKLDQGWVKDDSFVPLKKVKPDQEKLVSEATSLQGVTRTNVSSRYYPY 257
Query 169 GDLFAHVIGYVGRINEKELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAH 228
G+ AH+ GYV I +ELK + TY+ T+ IG G+E YED L GT G++ +
Sbjct 258 GEKTAHLTGYVRAITAEELKKKKEGTYSDTSNIGIAGLENVYEDKLRGTTGWK-IYVPQT 316
Query 229 SNVLRHLGRKEPIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSSPSF 288
V+ K+ G DL+L++D QM ++LKD GA VA+ P+TGE LALVS+PS+
Sbjct 317 GEVIAEKKAKD---GEDLHLTIDIKTQMKLYDELKDDSGAAVALQPKTGETLALVSAPSY 373
Query 289 NPNLFVTGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTV--DWGT 346
+PN F+ G S ++ L + + P ++ Y PGSTIKP+ GI GT+ D
Sbjct 374 DPNGFIFGWSDKEWKKLNKDKNNP-FSAKFNKTYAPGSTIKPIAAAIGIKNGTLKADEKK 432
Query 347 TIYDPGYFHLPGDSHKFRDWKKTGH-------------GSVNLHKSIVESCDTYFYVLSY 393
TI K ++W+K V+L +++ S + YF +
Sbjct 433 TI-------------KGKEWQKDSSWGGYSVTRVSERLQQVDLENALITSDNIYFAQNAL 479
Query 394 QLGIDRMNEWMRQFGFGQKTGVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGA 453
+G D + ++ FGF + + P + + + S L +T GQG
Sbjct 480 DMGADTFTKGLKTFGFSEDVPYEFPIQKSSIAND------KLDSDILLADT---GYGQGQ 530
Query 454 FTATPLQLAMATSIMANHGAHVVPHVLRASHGA------KPHTVHNAPDGKINFNGTEQD 507
+PL LA A + ++G V P +++ + T A D G +D
Sbjct 531 MQMSPLHLATAYTPFVDNGDLVKPTLIKKDSQTADVWHKQVVTKEGAADITKGLKGVVED 590
Query 508 WINMRDAMVDVVQSGTGRGIRTPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLF 567
A VV+ T +AGKTGTA++K+ K E +G F
Sbjct 591 --ERGSAYQPVVKGIT----------VAGKTGTAELKTSKDDKDGTE---------NGWF 629
Query 568 VGFAPADNPEIAIAVVWENGR-HGGS 592
VG+ +N ++ +A++ +N + GGS
Sbjct 630 VGY-DYENKDLLVAMMIQNVQDRGGS 654
Score = 20.8 bits (42), Expect = 3.4
Identities = 7/31 (23%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 249 SLDYGLQMVAAEQLKDKRGAVVAIDPRTGEI 279
++D+ + + DK +++I+P+ G+I
Sbjct 132 NIDWDPSFIFKQLADDKTVQIMSIEPKRGQI 162
>G3XD46 Peptidoglycan D,D-transpeptidase FtsI [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=579
Score = 175 bits (444), Expect = 3e-50
Identities = 174/644 (27%), Positives = 279/644 (43%), Gaps = 96/644 (15%)
Query 7 LKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLAP 66
+K N + LY R +GL+ + ++ R L ++ +D D +R +
Sbjct 1 MKLNYFQGALYPWRFCVIVGLLLAMVGAIVWRIVDLHVIDHDFLKGQGDARSVRHIAIPA 60
Query 67 ARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKTA 126
RG I DRNG LA + PV T A+ +++ R + + +D F RI+
Sbjct 61 HRGLITDRNGEPLAVSTPVTTLW---ANPKELMTAKERWPQLAAALGQDTKLFADRIEQN 117
Query 127 RKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINEKE 186
+ E + + LT LK PGV + R+YP G++ AH +G+ ++++
Sbjct 118 AEREFIYLVRGLTPEQGEGVIALKV--PGVYSIEEFRRFYPAGEVVAHAVGFTD-VDDR- 173
Query 187 LKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLG-RKEPIRGND 245
G+ G+E +++ L G PG V D V++ + K G
Sbjct 174 ---------------GREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKT 218
Query 246 LYLSLDYGLQMVAAEQLKD-------KRGAVVAIDPRTGEILALVSSPSFNPNLFVTGIS 298
L LS+D LQ +A +L++ K G++V +D +TGEILA+ + P++NPN
Sbjct 219 LALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPN------- 271
Query 299 HVDYSALRDNLDQP--LYNRALQGVYPPGSTIKPMEGLGGIHYGTVDW-GTTIYD--PGY 353
R NL QP + NRA+ V+ PGST+KP + G W + I D PG
Sbjct 272 ------NRRNL-QPAAMRNRAMIDVFEPGSTVKPFSMSAALASGR--WKPSDIVDVYPGT 322
Query 354 FHLPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKT 413
+ + RD + ++L +++S + +++ +G + + M+Q G GQ T
Sbjct 323 LQI--GRYTIRDVSRNSR-QLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDT 379
Query 414 GVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGA 473
G+ P E G PN KW K ET +++ G G + T +QLA A + +AN G
Sbjct 380 GLGFPGERVGNLPN--------HRKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGK 430
Query 474 HVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQSGTGRGIRTPLYQ 533
V + R V PDG + + V Q G R + P Y
Sbjct 431 SVPLSMTR---------VDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRA-QVPGYH 480
Query 534 IAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIA-IAVVWENGRHGGS 592
AGK+GTA+ S+ K Y E+ LF GFAPA +P IA + V+ E + G
Sbjct 481 AAGKSGTARKVSVGT-KGYRENAY------RSLFAGFAPATDPRIAMVVVIDEPSKAGYF 533
Query 593 AAQIARPIFDYWIVNRKKNPIRPANHQISGGLMTAGIKPGELPS 636
++ P+F + ++G L + P LP+
Sbjct 534 GGLVSAPVF---------------SKVMAGALRLMNVPPDNLPT 562
>P0AD69 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli
O157:H7]
Length=588
Score = 169 bits (428), Expect = 5e-48
Identities = 169/649 (26%), Positives = 281/649 (43%), Gaps = 105/649 (16%)
Query 8 KDNQQEKRLYRGRIFFAIGLVCCCLLL----LMSRYAYLQIVHYDEFSTASDKNRIRLQP 63
K +QE+ + I + L+C C+LL L+ R A+LQ++ D D +R+Q
Sbjct 9 KPKRQEE--HANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMRSLRVQQ 66
Query 64 LAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIA--RLTPILSLTQEDIDRFKS 121
++ +RG I DR+G LA + PV +V D G R + + +D+ +
Sbjct 67 VSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIPLDQLSA 126
Query 122 RIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGR 181
RI K + + + D+A + + K PG+ + + RYYP G++ AH+IG+
Sbjct 127 RINANPKGRFIYLARQV-NPDMADYIK-KLKLPGIHLREESRRYYPSGEVTAHLIGFT-- 182
Query 182 INEKELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRKEPI 241
N D+ G GVEK+++ L G PG V D + V+ + +
Sbjct 183 ---------NVDSQ------GIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQ 227
Query 242 RGNDLYLSLDYGLQMVAAEQL-------KDKRGAVVAIDPRTGEILALVSSPSFNPNLFV 294
++L LS+D LQ + +L K + G+ V +D TGE+LA+ +SPS+NPN
Sbjct 228 AAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPN--- 284
Query 295 TGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYF 354
+S A+R NR + V+ PGST+KPM + + G V + + Y
Sbjct 285 -NLSGTPKEAMR--------NRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY- 334
Query 355 HLPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTG 414
+ H+ +D + + + L + +S + L+ + + + +FG G+ T
Sbjct 335 --RINGHEIKDVAR--YSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATN 390
Query 415 VDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAH 474
+ L E GLYP +K +W E + S G G TPLQLA + + ++G +
Sbjct 391 LGLVGERSGLYP--------QKQRWSDIERATFSFGYG-LMVTPLQLARVYATIGSYGIY 441
Query 475 VVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQSGTGRGIRTPL--Y 532
+P ++ + + M++ V G G++ + Y
Sbjct 442 ------------RPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGY 489
Query 533 QIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWEN---GRH 589
+IA KTGTA+ K G+ N+ I G APA P A+ VV + G++
Sbjct 490 RIAIKTGTAK-KVGPDGRYINKYI--------AYTAGVAPASQPRFALVVVINDPQAGKY 540
Query 590 GGSAAQIARPIFDYWIVNRKKNPIRPANHQISGG-LMTAGIKPGELPSG 637
G A ++ P+F I GG L T I+P L +G
Sbjct 541 YGGA--VSAPVFG----------------AIMGGVLRTMNIEPDALTTG 571
>P0AD68 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli
(strain K12)]
Length=588
Score = 169 bits (428), Expect = 5e-48
Identities = 169/649 (26%), Positives = 281/649 (43%), Gaps = 105/649 (16%)
Query 8 KDNQQEKRLYRGRIFFAIGLVCCCLLL----LMSRYAYLQIVHYDEFSTASDKNRIRLQP 63
K +QE+ + I + L+C C+LL L+ R A+LQ++ D D +R+Q
Sbjct 9 KPKRQEE--HANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMRSLRVQQ 66
Query 64 LAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIA--RLTPILSLTQEDIDRFKS 121
++ +RG I DR+G LA + PV +V D G R + + +D+ +
Sbjct 67 VSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIPLDQLSA 126
Query 122 RIKTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGR 181
RI K + + + D+A + + K PG+ + + RYYP G++ AH+IG+
Sbjct 127 RINANPKGRFIYLARQV-NPDMADYIK-KLKLPGIHLREESRRYYPSGEVTAHLIGFT-- 182
Query 182 INEKELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRKEPI 241
N D+ G GVEK+++ L G PG V D + V+ + +
Sbjct 183 ---------NVDSQ------GIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQ 227
Query 242 RGNDLYLSLDYGLQMVAAEQL-------KDKRGAVVAIDPRTGEILALVSSPSFNPNLFV 294
++L LS+D LQ + +L K + G+ V +D TGE+LA+ +SPS+NPN
Sbjct 228 AAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPN--- 284
Query 295 TGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYF 354
+S A+R NR + V+ PGST+KPM + + G V + + Y
Sbjct 285 -NLSGTPKEAMR--------NRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY- 334
Query 355 HLPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQKTG 414
+ H+ +D + + + L + +S + L+ + + + +FG G+ T
Sbjct 335 --RINGHEIKDVAR--YSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATN 390
Query 415 VDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAH 474
+ L E GLYP +K +W E + S G G TPLQLA + + ++G +
Sbjct 391 LGLVGERSGLYP--------QKQRWSDIERATFSFGYG-LMVTPLQLARVYATIGSYGIY 441
Query 475 VVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQSGTGRGIRTPL--Y 532
+P ++ + + M++ V G G++ + Y
Sbjct 442 ------------RPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGY 489
Query 533 QIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWEN---GRH 589
+IA KTGTA+ K G+ N+ I G APA P A+ VV + G++
Sbjct 490 RIAIKTGTAK-KVGPDGRYINKYI--------AYTAGVAPASQPRFALVVVINDPQAGKY 540
Query 590 GGSAAQIARPIFDYWIVNRKKNPIRPANHQISGG-LMTAGIKPGELPSG 637
G A ++ P+F I GG L T I+P L +G
Sbjct 541 YGGA--VSAPVFG----------------AIMGGVLRTMNIEPDALTTG 571
>P0A0U8 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
meningitidis serogroup A / serotype 4A (strain DSM 15465
/ Z2491)]
Length=581
Score = 167 bits (422), Expect = 3e-47
Identities = 172/612 (28%), Positives = 267/612 (44%), Gaps = 87/612 (14%)
Query 6 PLKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLA 65
P ++ ++ GRI F + + L++R YLQ V Y+ D +R Q L
Sbjct 13 PKEEQVKKPMTSNGRISFVLMAIAVLFAGLIARGLYLQTVTYNFLKEQGDNRIVRTQTLP 72
Query 66 PARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKT 125
RG + DRNG +LA + P + +++++ + A+L + L +D +++++
Sbjct 73 ATRGTVSDRNGAVLALSAPTESLFAVPKEMKEMP-SAAQLERLSELVDVPVDVLRNKLEQ 131
Query 126 ARKTERVSIKLNLTETDIAKFSELK-YNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINE 184
K+ + IK L D E+K E ++ R+YP G+LFAHVIG+ I+
Sbjct 132 KGKS-FIWIKRQL---DPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTD-IDG 186
Query 185 KELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLG---RKEPI 241
K G+ G+E + ED LHG G E V D N++ L K P
Sbjct 187 K----------------GQEGLELSLEDSLHGEDGAEVVLRDRQGNIVDSLDSPRNKAPK 230
Query 242 RGNDLYLSLDYGLQMVAAEQL-------KDKRGAVVAIDPRTGEILALVSSPSFNPNLFV 294
G D+ LSLD +Q +A E+L + K G VV +D RTGEILAL ++P+++PN
Sbjct 231 NGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEILALANTPAYDPN--- 287
Query 295 TGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYF 354
D R NRA+ + PGS IKP + G D + Y
Sbjct 288 -RPGRADSEQRR--------NRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYK 338
Query 355 HLPG---DSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQ 411
P D+H + S+++ + +S + LS + G + M ++ + G G
Sbjct 339 IGPSPVRDTHVY--------PSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 412 KTGVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANH 471
+ P E+ GL N W+ +W E ++S G G + LQLA A + + +
Sbjct 391 RMHSGFPGETAGLLRN--WR------RWRPIEQATMSFGYG-LQLSLLQLARAYTALTHD 441
Query 472 GAHVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQ-SGTGRGIRTP 530
G +L S + AP GK F E +R+ MV V + GTG
Sbjct 442 GV-----LLPVSFEKQA----VAPQGKRIFK--ESTAREVRNLMVSVTEPGGTGTAGAVD 490
Query 531 LYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAV-VWENGRH 589
+ + KTGTA+ K N + + F+GFAPA NP + +AV + E H
Sbjct 491 GFDVGAKTGTAR-------KFVNGRYADNKHI--ATFIGFAPAKNPRVIVAVTIDEPTAH 541
Query 590 GGSAAQIARPIF 601
G +A P F
Sbjct 542 GYYGGVVAGPPF 553
>P0A0U9 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
meningitidis serogroup B (strain MC58)]
Length=581
Score = 167 bits (422), Expect = 3e-47
Identities = 172/612 (28%), Positives = 267/612 (44%), Gaps = 87/612 (14%)
Query 6 PLKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLA 65
P ++ ++ GRI F + + L++R YLQ V Y+ D +R Q L
Sbjct 13 PKEEQVKKPMTSNGRISFVLMAIAVLFAGLIARGLYLQTVTYNFLKEQGDNRIVRTQTLP 72
Query 66 PARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKT 125
RG + DRNG +LA + P + +++++ + A+L + L +D +++++
Sbjct 73 ATRGTVSDRNGAVLALSAPTESLFAVPKEMKEMP-SAAQLERLSELVDVPVDVLRNKLEQ 131
Query 126 ARKTERVSIKLNLTETDIAKFSELK-YNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINE 184
K+ + IK L D E+K E ++ R+YP G+LFAHVIG+ I+
Sbjct 132 KGKS-FIWIKRQL---DPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTD-IDG 186
Query 185 KELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLG---RKEPI 241
K G+ G+E + ED LHG G E V D N++ L K P
Sbjct 187 K----------------GQEGLELSLEDSLHGEDGAEVVLRDRQGNIVDSLDSPRNKAPK 230
Query 242 RGNDLYLSLDYGLQMVAAEQL-------KDKRGAVVAIDPRTGEILALVSSPSFNPNLFV 294
G D+ LSLD +Q +A E+L + K G VV +D RTGEILAL ++P+++PN
Sbjct 231 NGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEILALANTPAYDPN--- 287
Query 295 TGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYF 354
D R NRA+ + PGS IKP + G D + Y
Sbjct 288 -RPGRADSEQRR--------NRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYK 338
Query 355 HLPG---DSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQ 411
P D+H + S+++ + +S + LS + G + M ++ + G G
Sbjct 339 IGPSPVRDTHVY--------PSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 412 KTGVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANH 471
+ P E+ GL N W+ +W E ++S G G + LQLA A + + +
Sbjct 391 RMHSGFPGETAGLLRN--WR------RWRPIEQATMSFGYG-LQLSLLQLARAYTALTHD 441
Query 472 GAHVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQ-SGTGRGIRTP 530
G +L S + AP GK F E +R+ MV V + GTG
Sbjct 442 GV-----LLPVSFEKQA----VAPQGKRIFK--ESTAREVRNLMVSVTEPGGTGTAGAVD 490
Query 531 LYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAV-VWENGRH 589
+ + KTGTA+ K N + + F+GFAPA NP + +AV + E H
Sbjct 491 GFDVGAKTGTAR-------KFVNGRYADNKHI--ATFIGFAPAKNPRVIVAVTIDEPTAH 541
Query 590 GGSAAQIARPIF 601
G +A P F
Sbjct 542 GYYGGVVAGPPF 553
>P08149 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
gonorrhoeae]
Length=581
Score = 166 bits (420), Expect = 5e-47
Identities = 173/612 (28%), Positives = 266/612 (43%), Gaps = 87/612 (14%)
Query 6 PLKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIRLQPLA 65
P ++ ++ GRI F + + L++R YLQ V Y+ D +R Q L
Sbjct 13 PKEEQVKKPMTSNGRISFVLMAMAVLFACLIARGLYLQTVTYNFLKEQGDNRIVRTQALP 72
Query 66 PARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDRFKSRIKT 125
RG + DRNG +LA + P + D++++ + A+L + L +D +++++
Sbjct 73 ATRGTVSDRNGAVLALSAPTESLFAVPKDMKEMP-SAAQLERLSELVDVPVDVLRNKLEQ 131
Query 126 ARKTERVSIKLNLTETDIAKFSELK-YNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINE 184
K+ + IK L D E+K E ++ R+YP G+LFAHVIG+ I+
Sbjct 132 KGKS-FIWIKRQL---DPKVAEEVKALGLENFVFEKELKRHYPMGNLFAHVIGFTD-IDG 186
Query 185 KELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLG---RKEPI 241
K G+ G+E + ED L+G G E V D N++ L K P
Sbjct 187 K----------------GQEGLELSLEDSLYGEDGAEVVLRDRQGNIVDSLDSPRNKAPQ 230
Query 242 RGNDLYLSLDYGLQMVAAEQL-------KDKRGAVVAIDPRTGEILALVSSPSFNPNLFV 294
G D+ LSLD +Q +A E+L + K G VV +D RTGEILAL ++P+++PN
Sbjct 231 NGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEILALANTPAYDPN--- 287
Query 295 TGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYF 354
D R NRA+ + PGS IKP + G D + Y
Sbjct 288 -RPGRADSEQRR--------NRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYK 338
Query 355 HLPG---DSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQFGFGQ 411
P D+H + S+++ + +S + LS + G + M ++ + G G
Sbjct 339 IGPSPVRDTHVY--------PSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 412 KTGVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANH 471
+ P E+ GL N W+ +W E ++S G G + LQLA A + + +
Sbjct 391 RMHSGFPGETAGLLRN--WR------RWRPIEQATMSFGYG-LQLSLLQLARAYTALTHD 441
Query 472 GAHVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQ-SGTGRGIRTP 530
G VL K AP GK F E +R+ MV V + GTG
Sbjct 442 G------VLLPLSFEKQAV---APQGKRIFK--ESTAREVRNLMVSVTEPGGTGTAGAVD 490
Query 531 LYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAV-VWENGRH 589
+ + KTGTA+ K N + + F+GFAPA NP + +AV + E H
Sbjct 491 GFDVGAKTGTAR-------KFVNGRYADNKHV--ATFIGFAPAKNPRVIVAVTIDEPTAH 541
Query 590 GGSAAQIARPIF 601
G +A P F
Sbjct 542 GYYGGVVAGPPF 553
>P45059 Peptidoglycan D,D-transpeptidase FtsI [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=610
Score = 154 bits (388), Expect = 1e-42
Identities = 155/617 (25%), Positives = 259/617 (42%), Gaps = 91/617 (15%)
Query 1 MKQHFPLKDNQQEKRLYRGRIFFAIGLVCCCLLLLMSRYAYLQIVHYDEFSTASDKNRIR 60
+KQ+ P K EK RGR + L+ L L++R AY+Q ++ D S +DK +R
Sbjct 26 VKQNKPQK--VFEKCFMRGRYMLSTVLILLGLCALVARAAYVQSINADTLSNEADKRSLR 83
Query 61 LQPLAPARGYIYDRNGILLADNYPVFT-----ATMSRADVEDIDGTIARLTPILSLTQED 115
+ RG I DRNG LL+ + P+ TM + + IA L L +T+ D
Sbjct 84 KDEVLSVRGSILDRNGQLLSVSVPMSAIVADPKTMLKENSLADKERIAALAEELGMTEND 143
Query 116 IDRFKSRIKTARKTERVSIKLNLTETDIAKFSEL-KYNFPGVKIETQMTRYYPHGDLFAH 174
+ +K K + + +++K + + + G+ +ET+ R+YP + AH
Sbjct 144 L------VKKIEKNSKSGYLYLARQVELSKANYIRRLKIKGIILETEHRRFYPRVEEAAH 197
Query 175 VIGYVGRINEKELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRH 234
V+GY G G+EK++ LL G G +V D N++ H
Sbjct 198 VVGYTDIDGN-----------------GIEGIEKSFNSLLVGKDGSRTVRKDKRGNIVAH 240
Query 235 LGRKEPIRGNDLYLSLDYGLQMVAAEQLKD-------KRGAVVAIDPRTGEILALVSSPS 287
+ ++ D+ LS+D LQ + ++K + G V +D RTGE+LA+ ++PS
Sbjct 241 ISDEKKYDAQDVTLSIDEKLQSMVYREIKKAVSENNAESGTAVLVDVRTGEVLAMATAPS 300
Query 288 FNPNLFVTGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTT 347
+NPN V G+ + + NRA+ + PGST+KP L + G V
Sbjct 301 YNPNNRV-GVK-----------SELMRNRAITDTFEPGSTVKPFVVLTALQRGVVK-RDE 347
Query 348 IYDPGYFHLPGDSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQLGIDRMNEWMRQF 407
I D F L G L + ++ S + L+ ++ + E +
Sbjct 348 IIDTTSFKLSGKEIV----DVAPRAQQTLDEILMNSSNRGVSRLALRMPPSALMETYQNA 403
Query 408 GFGQKTGVDLPSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSI 467
G + T + L E G+ + + +W E +V+ G G TATPLQ+A A +
Sbjct 404 GLSKPTDLGLIGEQVGI-------LNANRKRWADIERATVAYGYG-ITATPLQIARAYAT 455
Query 468 MANHGAHVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAMVDVVQSGTGRGI 527
+ + G + + + V + K E+ I + AMV+
Sbjct 456 LGSFGVYRPLSITKVDPPVIGKRVFSEKITKDIVGILEKVAIKNKRAMVEG--------- 506
Query 528 RTPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAVVWEN- 586
Y++ KTGTA + I G N+ + G AP +P A+ V+ +
Sbjct 507 ----YRVGVKTGTA--RKIENGHYVNKYV--------AFTAGIAPISDPRYALVVLINDP 552
Query 587 --GRHGGSAAQIARPIF 601
G + G A ++ P+F
Sbjct 553 KAGEYYGGA--VSAPVF 567
>P07944 Beta-lactam-inducible penicillin-binding protein [Staphylococcus
aureus]
Length=670
Score = 154 bits (388), Expect = 2e-42
Identities = 159/578 (28%), Positives = 268/578 (46%), Gaps = 81/578 (14%)
Query 59 IRLQPLAPARGYIYDRNGILLADNYPVFTATMSRADVEDIDGTIARLTPILSLTQEDIDR 118
I ++ L RG I DRN + LA+ + +V D + LS++++ I+
Sbjct 142 IHIENLKSERGKILDRNNVELANTGTHMRLGIVPKNVSKKD--YKAIAKELSISEDYINN 199
Query 119 FKSRI----------KTARKTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPH 168
+I KT +K + +D AK L N ET+ +R YP
Sbjct 200 KWIKIGYKMIPSFHFKTVKKMDEYL-------SDFAKKFHLTTN------ETE-SRNYPL 245
Query 169 GDLFAHVIGYVGRINEKELKSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYES--VEAD 226
G +H++GYVG IN +ELK Y +IGK G+EK Y+ L GY V D
Sbjct 246 GKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVRVD 305
Query 227 AHSNVLRH-LGRKEPIRGNDLYLSLDYGLQMVAAEQLKDKRGAVVAIDPRTGEILALVSS 285
+SN + H L K+ G D+ L++D +Q +K+ G+ AI P+TGE+LALVS+
Sbjct 306 DNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVST 365
Query 286 PSFNPNLFVTGISHVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWG 345
PS++ F+ G+S+ +Y+ L ++ +PL N+ Q PGST K + + G++ T+D
Sbjct 366 PSYDVYPFMYGMSNEEYNKLTEDKKEPLLNK-FQITTSPGSTQKILTAMIGLNNKTLD-- 422
Query 346 TTIYDPGYFHLPGDS-HKFRDW-------KKTGHGSVNLHKSIVESCDTYFYVLSYQLGI 397
D + + G K + W + +G+++L ++I S + +F ++ +LG
Sbjct 423 ----DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGS 478
Query 398 DRMNEWMRQFGFGQKTGVDLPSESEGLYP--NPEWKMRTRKSKWLKGETISVSIGQGAFT 455
+ + M++ G G+ D+PS+ YP N + + ++ L ++ GQG
Sbjct 479 KKFEKGMKKLGVGE----DIPSD----YPFYNAQISNKNLDNEILLADS---GYGQGEIL 527
Query 456 ATPLQLAMATSIMANHGAHVVPHVLRASHGAKPHTVHNAPDGKINFNGTEQDWINMRDAM 515
P+Q+ S + N+G PH+L+ K K N N + D M
Sbjct 528 INPVQILSIYSALENNGNINAPHLLK---DTKNKVWKKNIISKENIN-------LLNDGM 577
Query 516 VDVVQSGTGRGIRTPLYQIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADN 575
VV I + GK+GTA++K + QG+ + RQ+ G F+ + DN
Sbjct 578 QQVVNKTHKEDIYRSYANLIGKSGTAELK-MKQGE-------TGRQI--GWFISY-DKDN 626
Query 576 PEIAIAVVWENGRHGGSA---AQIARPIFDYWIVNRKK 610
P + +A+ ++ + G A A+I+ ++D N K
Sbjct 627 PNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNK 664
>Q07868 Penicillin-binding protein 2B [Bacillus subtilis (strain
168)]
Length=713
Score = 153 bits (387), Expect = 4e-42
Identities = 153/590 (26%), Positives = 263/590 (45%), Gaps = 85/590 (14%)
Query 24 AIGLVCCCLL--LLMSRYAYLQIV---HYDEFSTASDKNRIRLQPLAPARGYIYDRNGIL 78
AI +C L +++ R AY+QI + + +T + + + + + +RG I DR G +
Sbjct 13 AILSICFALFFFVILGRMAYIQITGKANGEVLATKATEQHEKKRTIEASRGSILDRKGKV 72
Query 79 LADNYPVFT--ATMSRADVEDI---------DGTIARLTPILSLTQEDIDRFKSRIKTAR 127
+A++ + A + + D+ + T L+ +++L + DI + K A+
Sbjct 73 IAEDTATYKLIAILDKKMTTDVKHPQHVVNKEKTAEALSKVINLDKADILDILN--KDAK 130
Query 128 KTERVSIKLNLTETDIAKFSELKYNFPGVKIETQMTRYYPHGDLFAHVIGYVGRINEKEL 187
+ E S ++T + K ++K PG+ RYYP+G +++IGY
Sbjct 131 QVEFGSAGRDITYSQKQKIEKMK--LPGISFLRDTKRYYPNGVFASNLIGYA-------- 180
Query 188 KSLNKDTYAGTNLIGKIGVEKTYEDLLHGTPGYESVEADAHSNVLRHLGRK--EPIRGND 245
++++T + G +G+EK + L GY + E+D L + K P G++
Sbjct 181 -EVDEET---NEISGAMGLEKVLDKYLKERDGYVTYESDKSGWELPNSKNKITAPKNGDN 236
Query 246 LYLSLDYGLQMV-------AAEQLKDKRGAVVAIDPRTGEILALVSSPSFNPNLFVTGIS 298
+YL++D +Q A++ K+ +DP+TG++LA+ PSF+PN
Sbjct 237 VYLTIDQKIQTFLEDSMTKVAQKYNPKKIMAAVVDPKTGKVLAMGQRPSFDPNK------ 290
Query 299 HVDYSALRDNLDQPLYNRALQGVYPPGSTIKPMEGLGGIHYGTVDWGTTIYDPGYFHLPG 358
RD + YN + Y PGST+K L V Y G F + G
Sbjct 291 -------RDVTNY--YNDLISYAYEPGSTMKIFT-LAAAMQENVFNANEKYKSGTFEVGG 340
Query 359 DSHKFRDWKKTGHGSVNLHKSIVESCDTYFYVLSYQ-LGIDRMNEWMRQFGFGQKTGVDL 417
K + G G H ++ S + F L+ + LG DR+N+++ +F F QKTG+DL
Sbjct 341 APVKDHN-NGVGWGPTTYHDGVLRSSNVAFAKLAKEKLGYDRLNQYLHKFNFYQKTGIDL 399
Query 418 PSESEGLYPNPEWKMRTRKSKWLKGETISVSIGQGAFTATPLQLAMATSIMANHGAHVVP 477
P E + ++ + + + S + GQ A TP+Q A + +AN G + P
Sbjct 400 PGE-----------VSSKINFKYEFDKASTAYGQ-ASAVTPIQQIQAATAIANDGKMMKP 447
Query 478 HVLRASHGAKPHTVHNAPDGKINFNGT---EQDWINMRDAMVDVVQS--GTGRGIRTPLY 532
+V+ H P K GT +RD + +VV S GTG+ + +
Sbjct 448 YVI--DHIVDPDKDKTIYQNKPESAGTPISASTAKKVRDILGEVVTSKIGTGQAYKIEGF 505
Query 533 QIAGKTGTAQVKSIAQGKKYNESILSERQLDHGLFVGFAPADNPEIAIAV 582
+AGKTGTAQ+ ++ + F+G AP D+PE+ I V
Sbjct 506 DVAGKTGTAQIAGKGGYLDGTDNYIFS-------FMGMAPKDDPELLIYV 548
Lambda K H a alpha
0.318 0.136 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5942070
Database: 5dea5b874c1f7e8982e0ae490fedc236.SwissProt.fasta
Posted date: May 31, 2024 10:35 AM
Number of letters in database: 10,601
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
